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Releases: at-cg/PHI

PHI v1.0

26 Oct 06:23
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v1.0
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Release Notes

We are excited to announce the initial release of PHI (Pangenome-based Haplotype Inference) v1.0. This version provides a robust framework for reconstructing haplotypes from low-coverage sequencing data using a haplotype-aware pangenome graph.

Key Features

  1. Dual Integer Programming Methods:

    • Integer Linear Programming (ILP)
    • Integer Quadratic Programming (IQP)

  2. Flexible Pangenome Graph Support:

    • GFA v1.1:
    • Variant Call Format (VCF)

  3. Gurobi Optimizer (v11.0.2) Integration

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