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<ul>
<li class="toctree-l1 has-children"><a class="reference internal" href="../../../_summary/arcade_collection.convert.html">arcade_collection.convert</a><input class="toctree-checkbox" id="toctree-checkbox-1" name="toctree-checkbox-1" role="switch" type="checkbox"/><label for="toctree-checkbox-1"><div class="visually-hidden">Toggle navigation of arcade_collection.convert</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul>
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<li class="toctree-l2"><a class="reference internal" href="../../../_summary/arcade_collection.output.convert_model_units.html">convert_model_units</a></li>
<li class="toctree-l2"><a class="reference internal" href="../../../_summary/arcade_collection.output.extract_tick_json.html">extract_tick_json</a></li>
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<li class="toctree-l2"><a class="reference internal" href="../../../_summary/arcade_collection.output.get_voxel_contours.html">get_voxel_contours</a></li>
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<meta name="color-scheme" content="light dark"><link rel="index" title="Index" href="../../../genindex.html" /><link rel="search" title="Search" href="../../../search.html" />

<!-- Generated with Sphinx 7.0.1 and Furo 2023.05.20 -->
<title>arcade_collection.output.get_voxel_contours - ARCADE Collection 0.15.0</title>
<title>arcade_collection.convert.convert_to_contours - ARCADE Collection 0.15.0</title>
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<ul>
<li class="toctree-l1 has-children"><a class="reference internal" href="../../../_summary/arcade_collection.convert.html">arcade_collection.convert</a><input class="toctree-checkbox" id="toctree-checkbox-1" name="toctree-checkbox-1" role="switch" type="checkbox"/><label for="toctree-checkbox-1"><div class="visually-hidden">Toggle navigation of arcade_collection.convert</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul>
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<li class="toctree-l2"><a class="reference internal" href="../../../_summary/arcade_collection.output.convert_model_units.html">convert_model_units</a></li>
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</label>
</div>
<article role="main">
<h1>Source code for arcade_collection.output.get_voxel_contours</h1><div class="highlight"><pre>
<h1>Source code for arcade_collection.convert.convert_to_contours</h1><div class="highlight"><pre>
<span></span><span class="kn">import</span> <span class="nn">tarfile</span>

<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
Expand All @@ -243,7 +242,7 @@ <h1>Source code for arcade_collection.output.get_voxel_contours</h1><div class="
<span class="p">}</span>


<div class="viewcode-block" id="get_voxel_contours"><a class="viewcode-back" href="../../../_summary/arcade_collection.output.get_voxel_contours.html#arcade_collection.output.get_voxel_contours.get_voxel_contours">[docs]</a><span class="k">def</span> <span class="nf">get_voxel_contours</span><span class="p">(</span>
<div class="viewcode-block" id="convert_to_contours"><a class="viewcode-back" href="../../../_summary/arcade_collection.convert.convert_to_contours.html#arcade_collection.convert.convert_to_contours.convert_to_contours">[docs]</a><span class="k">def</span> <span class="nf">convert_to_contours</span><span class="p">(</span>
<span class="n">series_key</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span>
<span class="n">data_tar</span><span class="p">:</span> <span class="n">tarfile</span><span class="o">.</span><span class="n">TarFile</span><span class="p">,</span>
<span class="n">frame</span><span class="p">:</span> <span class="nb">int</span><span class="p">,</span>
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3 changes: 1 addition & 2 deletions _modules/arcade_collection/convert/convert_to_images.html
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<ul>
<li class="toctree-l1 has-children"><a class="reference internal" href="../../../_summary/arcade_collection.convert.html">arcade_collection.convert</a><input class="toctree-checkbox" id="toctree-checkbox-1" name="toctree-checkbox-1" role="switch" type="checkbox"/><label for="toctree-checkbox-1"><div class="visually-hidden">Toggle navigation of arcade_collection.convert</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul>
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<li class="toctree-l2"><a class="reference internal" href="../../../_summary/arcade_collection.output.convert_model_units.html">convert_model_units</a></li>
<li class="toctree-l2"><a class="reference internal" href="../../../_summary/arcade_collection.output.extract_tick_json.html">extract_tick_json</a></li>
<li class="toctree-l2"><a class="reference internal" href="../../../_summary/arcade_collection.output.get_location_voxels.html">get_location_voxels</a></li>
<li class="toctree-l2"><a class="reference internal" href="../../../_summary/arcade_collection.output.get_voxel_contours.html">get_voxel_contours</a></li>
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3 changes: 1 addition & 2 deletions _modules/arcade_collection/convert/convert_to_meshes.html
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<ul>
<li class="toctree-l1 has-children"><a class="reference internal" href="../../../_summary/arcade_collection.convert.html">arcade_collection.convert</a><input class="toctree-checkbox" id="toctree-checkbox-1" name="toctree-checkbox-1" role="switch" type="checkbox"/><label for="toctree-checkbox-1"><div class="visually-hidden">Toggle navigation of arcade_collection.convert</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul>
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Expand All @@ -178,8 +179,6 @@
<li class="toctree-l2"><a class="reference internal" href="../../../_summary/arcade_collection.output.convert_model_units.html">convert_model_units</a></li>
<li class="toctree-l2"><a class="reference internal" href="../../../_summary/arcade_collection.output.extract_tick_json.html">extract_tick_json</a></li>
<li class="toctree-l2"><a class="reference internal" href="../../../_summary/arcade_collection.output.get_location_voxels.html">get_location_voxels</a></li>
<li class="toctree-l2"><a class="reference internal" href="../../../_summary/arcade_collection.output.get_voxel_contours.html">get_voxel_contours</a></li>
<li class="toctree-l2"><a class="reference internal" href="../../../_summary/arcade_collection.output.merge_parsed_results.html">merge_parsed_results</a></li>
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<li class="toctree-l2"><a class="reference internal" href="../../../_summary/arcade_collection.output.parse_growth_file.html">parse_growth_file</a></li>
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7 changes: 3 additions & 4 deletions _modules/arcade_collection/convert/convert_to_projection.html
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<ul>
<li class="toctree-l1 has-children"><a class="reference internal" href="../../../_summary/arcade_collection.convert.html">arcade_collection.convert</a><input class="toctree-checkbox" id="toctree-checkbox-1" name="toctree-checkbox-1" role="switch" type="checkbox"/><label for="toctree-checkbox-1"><div class="visually-hidden">Toggle navigation of arcade_collection.convert</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul>
<li class="toctree-l2"><a class="reference internal" href="../../../_summary/arcade_collection.convert.convert_to_colorizer.html">convert_to_colorizer</a></li>
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<li class="toctree-l2"><a class="reference internal" href="../../../_summary/arcade_collection.convert.convert_to_projection.html">convert_to_projection</a></li>
Expand All @@ -178,8 +179,6 @@
<li class="toctree-l2"><a class="reference internal" href="../../../_summary/arcade_collection.output.convert_model_units.html">convert_model_units</a></li>
<li class="toctree-l2"><a class="reference internal" href="../../../_summary/arcade_collection.output.extract_tick_json.html">extract_tick_json</a></li>
<li class="toctree-l2"><a class="reference internal" href="../../../_summary/arcade_collection.output.get_location_voxels.html">get_location_voxels</a></li>
<li class="toctree-l2"><a class="reference internal" href="../../../_summary/arcade_collection.output.get_voxel_contours.html">get_voxel_contours</a></li>
<li class="toctree-l2"><a class="reference internal" href="../../../_summary/arcade_collection.output.merge_parsed_results.html">merge_parsed_results</a></li>
<li class="toctree-l2"><a class="reference internal" href="../../../_summary/arcade_collection.output.parse_cells_file.html">parse_cells_file</a></li>
<li class="toctree-l2"><a class="reference internal" href="../../../_summary/arcade_collection.output.parse_growth_file.html">parse_growth_file</a></li>
<li class="toctree-l2"><a class="reference internal" href="../../../_summary/arcade_collection.output.parse_locations_file.html">parse_locations_file</a></li>
Expand Down Expand Up @@ -234,7 +233,7 @@ <h1>Source code for arcade_collection.convert.convert_to_projection</h1><div cla
<span class="kn">import</span> <span class="nn">matplotlib.pyplot</span> <span class="k">as</span> <span class="nn">plt</span>
<span class="kn">from</span> <span class="nn">matplotlib.patches</span> <span class="kn">import</span> <span class="n">Rectangle</span>

<span class="kn">from</span> <span class="nn">arcade_collection.output.get_voxel_contours</span> <span class="kn">import</span> <span class="n">get_voxel_contours</span>
<span class="kn">from</span> <span class="nn">arcade_collection.convert.convert_to_contours</span> <span class="kn">import</span> <span class="n">convert_to_contours</span>


<div class="viewcode-block" id="convert_to_projection"><a class="viewcode-back" href="../../../_summary/arcade_collection.convert.convert_to_projection.html#arcade_collection.convert.convert_to_projection.convert_to_projection">[docs]</a><span class="k">def</span> <span class="nf">convert_to_projection</span><span class="p">(</span>
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<span class="s2">&quot;side1&quot;</span><span class="p">:</span> <span class="nb">list</span><span class="p">(</span><span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="n">width</span><span class="p">)),</span>
<span class="s2">&quot;side2&quot;</span><span class="p">:</span> <span class="nb">list</span><span class="p">(</span><span class="nb">range</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="n">length</span><span class="p">)),</span>
<span class="p">}</span>
<span class="n">contours</span> <span class="o">=</span> <span class="n">get_voxel_contours</span><span class="p">(</span><span class="n">series_key</span><span class="p">,</span> <span class="n">data_tar</span><span class="p">,</span> <span class="n">frame</span><span class="p">,</span> <span class="n">regions</span><span class="p">,</span> <span class="n">box</span><span class="p">,</span> <span class="n">indices</span><span class="p">)</span>
<span class="n">contours</span> <span class="o">=</span> <span class="n">convert_to_contours</span><span class="p">(</span><span class="n">series_key</span><span class="p">,</span> <span class="n">data_tar</span><span class="p">,</span> <span class="n">frame</span><span class="p">,</span> <span class="n">regions</span><span class="p">,</span> <span class="n">box</span><span class="p">,</span> <span class="n">indices</span><span class="p">)</span>

<span class="k">for</span> <span class="n">region</span> <span class="ow">in</span> <span class="n">regions</span><span class="p">:</span>
<span class="n">color</span> <span class="o">=</span> <span class="n">colors</span><span class="p">[</span><span class="n">region</span><span class="p">]</span>
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