Version 1.2.0
Bioinformatics tools to analyze molecular inversion probe (MIP) sequencing results Bailey Lab
Checkout the website bellow for more details
http://baileylab.brown.edu/MIPWrangler/
Publications: Aydemir O, et al. (2018) Drug-Resistance and Population Structure of Plasmodium falciparum Across the Democratic Republic of Congo Using High-Throughput Molecular Inversion Probes. J Infect Dis 218(6):946–955.
See installing tab on http://baileylab.brown.edu/MIPWrangler/ for full details for installing for each operating system.
Need to have a c++ compiler, by default g++-7 (Ubuntu,RedHat) and clang++ (MAC OS). The install scripts use python3 which will also be needed for the install steps.
Also though MIPWrangler does not use cmake, several of the libraries it uses do depend on cmake so it needs to be present.
The install.sh script will download other c++ libraries and compile them and then compile MIPWrangler.
git clone https://github.com/bailey-lab/MIPWrangler.git
cd MIPWrangler
./install.sh
make To add MIPWrangler to path
export PATH=$HOME/MIPWrangler/bin/:$PATHMIPWrangler tends to have long flags so that they can be clear what they do but it's somewhat annoying to type them out so bash completion has been added. Put the content of the file at bashCompletion/MIPWrangler into a file ~/.bash_completion and it will be source on your next login or use the bellow command while in the MIPWrangler directory
./setup.py --addBashCompletion Which will actually do exactly described above, afterwards while typing flags use the tab key to complete them
Tutorials and detailed usages will be located at http://baileylab.brown.edu/MIPWrangler or email [email protected] for more information