DESCRIPTION

Type: Package
Package: coiaf
Title: Complexity of Infection Estimation with Allele Frequencies
Version: 0.1.2
Authors@R:
    c(person(given = "Aris",
             family = "Paschalidis",
             role = c("aut", "cre"),
             email = "aris_paschalidis@brown.edu",
             comment = c(ORCID = "0000-0003-2247-1885")),
      person(given = "OJ",
             family = "Watson",
             role = "aut",
             email = "oj.watson@hotmail.co.uk",
             comment = c(ORCID = "0000-0003-2374-0741")))
Maintainer: Aris Paschalidis <aris_paschalidis@brown.edu>
Description: Provides a direct method for estimating complexity of infection
    using easily calculated measures from sequence read depth data.
License: MIT + file LICENSE
URL: https://bailey-lab.github.io/coiaf/,
    https://github.com/bailey-lab/coiaf
BugReports: https://github.com/bailey-lab/coiaf/issues
Depends:
    R (>= 3.5.0)
Imports:
    boot,
    broom,
    cli,
    dplyr,
    ggplot2,
    glue,
    Hmisc,
    lifecycle,
    magrittr,
    mathjaxr,
    purrr,
    rlang (>= 0.4.11),
    stringr,
    tibble,
    tidyr,
    utils
Suggests:
    bench,
    here,
    knitr,
    patchwork,
    pbapply,
    rmarkdown,
    roxygen2,
    spelling,
    testthat (>= 3.0.0),
    vdiffr,
    withr
VignetteBuilder:
    knitr
RdMacros:
    mathjaxr
Config/testthat/edition: 3
Encoding: UTF-8
Language: en-US
LazyData: TRUE
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.2