Dockerfile

# Copyright 2020 Division of Medical Image Computing, German Cancer Research Center (DKFZ), Heidelberg, Germany
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at

#   http://www.apache.org/licenses/LICENSE-2.0
   
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.

# For more information, please refer to https://aka.ms/vscode-docker-python
FROM python:3.8-slim-buster
# FROM nvcr.io/nvidia/pytorch:20.09-py3 
# FROM nvcr.io/nvidia/pytorch:21.01-py3
# This image makes trubles - pandas and skipy cant be found
# FROM python:3.8-slim-buster

# Keeps Python from generating .pyc files in the container
ENV PYTHONDONTWRITEBYTECODE=1

# Turns off buffering for easier container logging
ENV PYTHONUNBUFFERED=1

RUN apt-get update && apt-get install -y \
    git \
    htop \
    zip \
    unzip \
    curl \
 && rm -rf /var/lib/apt/lists/*

# Clone directory from git
RUN git clone  --single-branch --branch master https://github.com/MIC-DKFZ/BodyPartRegression.git && cd BodyPartRegression && git checkout v1.1 

# Download public model from zenodo 
RUN touch BodyPartRegression/src/models/public_bpr_model.zip
RUN curl https://zenodo.org/record/5113483/files/public_bpr_model.zip?download=1 -o BodyPartRegression/src/models/public_bpr_model.zip 

# Unzip model 
RUN cd BodyPartRegression/src/models && unzip public_bpr_model.zip 

# prepare workdir 
WORKDIR /app
RUN mv /BodyPartRegression/* /app/
RUN cd /app && ls 

RUN ls 
RUN pwd 

# Install pip requirements
RUN pip3 install --upgrade pip
RUN pip3 install -r requirements.txt
RUN pip3 install -e .

# Creates a non-root user with an explicit UID and adds permission to access the /app folder
# For more info, please refer to https://aka.ms/vscode-docker-python-configure-containers
# RUN adduser -u 5678 --disabled-password --gecos "" appuser && chown -R appuser /app

# add root as user
USER root

# During debugging, this entry point will be overridden. For more information, please refer to https://aka.ms/vscode-docker-python-debug
CMD ["python3", "-u", "starter.py"]