-
Notifications
You must be signed in to change notification settings - Fork 2
/
paths_mimic_cxr.json
291 lines (291 loc) · 13.4 KB
/
paths_mimic_cxr.json
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
{
"effusion": {
"MoIE_paths": {
"iter1": {
"base_path": "densenet121_1028_lr_0.01_SGD_temperature-lens_7.6_cov_0.2_alpha_0.5_selection-threshold_0.5_lm_96.0_lambda-lens_0.0001_alpha-KD_0.99_temperature-KD_20.0_hidden-layers_2020_input-size-pi_2048_layer_layer4",
"prev_path": "",
"explainer_path": "explainer",
"output": "g_outputs",
"checkpoint_g": "model_seq_epoch_486.pth.tar",
"checkpoint_residual": "model_residual_best_model_epoch_1.pth.tar"
},
"iter2": {
"base_path": "densenet121_1028_lr_0.01_SGD_temperature-lens_7.6_cov_0.2_alpha_0.5_selection-threshold_0.5_lm_96.0_lambda-lens_0.0001_alpha-KD_0.99_temperature-KD_20.0_hidden-layers_2020_input-size-pi_2048_layer_layer4",
"prev_path": "",
"explainer_path": "explainer",
"output": "g_outputs",
"checkpoint_g": "model_seq_epoch_180.pth.tar",
"checkpoint_residual": "model_residual_best_model_epoch_1.pth.tar"
},
"iter3": {
"base_path": "densenet121_1028_lr_0.001_SGD_temperature-lens_7.6_cov_0.45_alpha_0.5_selection-threshold_0.5_lm_96.0_lambda-lens_0.0001_alpha-KD_0.99_temperature-KD_20.0_hidden-layers_3030_input-size-pi_2048_layer_layer4",
"prev_path": "",
"explainer_path": "explainer",
"output": "g_outputs",
"checkpoint_g": "model_seq_epoch_9.pth.tar",
"checkpoint_residual": "model_residual_best_model_epoch_1.pth.tar"
},
"iter4": {
"base_path": "densenet121_1028_lr_0.001_SGD_temperature-lens_7.6_cov_0.45_alpha_0.5_selection-threshold_0.5_lm_96.0_lambda-lens_0.0001_alpha-KD_0.99_temperature-KD_20.0_hidden-layers_3030_input-size-pi_2048_layer_layer4",
"prev_path": "",
"explainer_path": "explainer",
"output": "g_outputs",
"checkpoint_g": "model_seq_epoch_203.pth.tar",
"checkpoint_residual": "model_residual_best_model_epoch_1.pth.tar"
},
"iter5": {
"base_path": "densenet121_1028_lr_0.001_SGD_temperature-lens_7.6_cov_0.05_alpha_0.5_selection-threshold_0.5_lm_96.0_lambda-lens_0.0001_alpha-KD_0.99_temperature-KD_20.0_hidden-layers_3030_input-size-pi_2048_layer_layer4",
"prev_path": "",
"explainer_path": "explainer",
"output": "g_outputs",
"checkpoint_g": "model_seq_epoch_87.pth.tar",
"checkpoint_residual": "model_residual_best_model_epoch_1.pth.tar"
}
},
"bb": {
"root_bb": "lr_0.01_epochs_60_loss_CE",
"checkpoint_bb": "g_best_model_epoch_8.pth.tar",
"img_size": 512,
"layer": "features_denseblock4",
"pool1": "average"
},
"t": {
"checkpoint_t_path": "lr_0.01_epochs_60_loss_BCE_W_flattening_type_flatten_layer_features_denseblock4",
"checkpoint_file": "g_best_model_epoch_10.pth.tar"
},
"params": {
"labels": [
"0 (No Effusion)",
"1 (Effusion)"
]
}
},
"pneumothorax": {
"MoIE_paths": {
"iter1": {
"base_path": "densenet121_1028_lr_0.01_SGD_temperature-lens_10.0_cov_0.2_alpha_0.5_selection-threshold_0.5_lm_256.0_lambda-lens_0.0001_alpha-KD_0.99_temperature-KD_20.0_hidden-layers_2020_input-size-pi_2048_layer_layer4",
"prev_path": "",
"explainer_path": "explainer",
"output": "g_outputs",
"checkpoint_g": "model_seq_epoch_226.pth.tar",
"checkpoint_residual": "model_residual_best_model_epoch_1.pth.tar"
},
"iter2": {
"base_path": "densenet121_1028_lr_0.01_SGD_temperature-lens_10.0_cov_0.2_alpha_0.5_selection-threshold_0.5_lm_256.0_lambda-lens_0.0001_alpha-KD_0.99_temperature-KD_20.0_hidden-layers_2020_input-size-pi_2048_layer_layer4",
"prev_path": "",
"explainer_path": "explainer",
"output": "g_outputs",
"checkpoint_g": "model_seq_epoch_17.pth.tar",
"checkpoint_residual": "model_residual_best_model_epoch_1.pth.tar"
},
"iter3": {
"base_path": "densenet121_1028_lr_0.01_SGD_temperature-lens_10.0_cov_0.25_alpha_0.5_selection-threshold_0.5_lm_256.0_lambda-lens_0.0001_alpha-KD_0.99_temperature-KD_20.0_hidden-layers_2020_input-size-pi_2048_layer_layer4",
"prev_path": "",
"explainer_path": "explainer",
"output": "g_outputs",
"checkpoint_g": "model_seq_epoch_2.pth.tar",
"checkpoint_residual": "model_residual_best_model_epoch_1.pth.tar"
},
"iter4": {
"base_path": "densenet121_1028_lr_0.01_SGD_temperature-lens_10.0_cov_0.25_alpha_0.5_selection-threshold_0.5_lm_256.0_lambda-lens_0.0001_alpha-KD_0.99_temperature-KD_20.0_hidden-layers_2020_input-size-pi_2048_layer_layer4",
"prev_path": "",
"explainer_path": "explainer",
"output": "g_outputs",
"checkpoint_g": "model_seq_epoch_40.pth.tar",
"checkpoint_residual": "model_residual_best_model_epoch_1.pth.tar"
},
"iter5": {
"base_path": "densenet121_1028_lr_0.01_SGD_temperature-lens_10.0_cov_0.25_alpha_0.5_selection-threshold_0.5_lm_256.0_lambda-lens_0.0001_alpha-KD_0.99_temperature-KD_20.0_hidden-layers_2020_input-size-pi_2048_layer_layer4",
"prev_path": "",
"explainer_path": "explainer",
"output": "g_outputs",
"checkpoint_g": "model_seq_epoch_47.pth.tar",
"checkpoint_residual": "model_residual_best_model_epoch_1.pth.tar"
}
},
"bb": {
"root_bb": "lr_0.01_epochs_60_loss_CE",
"checkpoint_bb": "g_best_model_epoch_4.pth.tar",
"img_size": 512,
"layer": "features_denseblock4",
"pool1": "average"
},
"t": {
"checkpoint_t_path": "lr_0.01_epochs_60_loss_BCE_W_flattening_type_flatten_layer_features_denseblock4",
"checkpoint_file": "g_best_model_epoch_16.pth.tar"
},
"params": {
"labels": [
"0 (No Pneumothorax)",
"1 (Pneumothorax)"
]
}
},
"cardiomegaly": {
"MoIE_paths": {
"iter1": {
"base_path": "densenet121_1028_lr_0.01_SGD_temperature-lens_7.6_cov_0.2_alpha_0.5_selection-threshold_0.5_lm_1024.0_lambda-lens_0.0001_alpha-KD_0.99_temperature-KD_20.0_hidden-layers_2020_input-size-pi_2048_layer_layer4",
"prev_path": "",
"explainer_path": "explainer",
"output": "g_outputs",
"checkpoint_g": "model_seq_epoch_384.pth.tar",
"checkpoint_residual": "model_residual_best_model_epoch_1.pth.tar"
},
"iter2": {
"base_path": "densenet121_1028_lr_0.01_SGD_temperature-lens_7.6_cov_0.2_alpha_0.5_selection-threshold_0.5_lm_1024.0_lambda-lens_0.0001_alpha-KD_0.99_temperature-KD_20.0_hidden-layers_2020_input-size-pi_2048_layer_layer4",
"prev_path": "",
"explainer_path": "explainer",
"output": "g_outputs",
"checkpoint_g": "model_seq_epoch_41.pth.tar",
"checkpoint_residual": "model_residual_best_model_epoch_1.pth.tar"
},
"iter3": {
"base_path": "densenet121_1028_lr_0.01_SGD_temperature-lens_7.6_cov_0.35_alpha_0.5_selection-threshold_0.5_lm_1024.0_lambda-lens_0.0001_alpha-KD_0.99_temperature-KD_20.0_hidden-layers_2020_input-size-pi_2048_layer_layer4",
"prev_path": "",
"explainer_path": "explainer",
"output": "g_outputs",
"checkpoint_g": "model_seq_epoch_169.pth.tar",
"checkpoint_residual": "model_residual_best_model_epoch_1.pth.tar"
},
"iter4": {
"base_path": "densenet121_1028_lr_0.01_SGD_temperature-lens_7.6_cov_0.3_alpha_0.5_selection-threshold_0.5_lm_1024.0_lambda-lens_0.0001_alpha-KD_0.99_temperature-KD_20.0_hidden-layers_2020_input-size-pi_2048_layer_layer4",
"prev_path": "",
"explainer_path": "explainer",
"output": "g_outputs",
"checkpoint_g": "model_seq_epoch_139.pth.tar",
"checkpoint_residual": "model_residual_best_model_epoch_1.pth.tar"
}
},
"bb": {
"root_bb": "lr_0.01_epochs_60_loss_CE",
"checkpoint_bb": "g_best_model_epoch_4.pth.tar",
"img_size": 512,
"layer": "features_denseblock4",
"pool1": "average"
},
"t": {
"checkpoint_t_path": "lr_0.01_epochs_60_loss_BCE_W_flattening_type_flatten_layer_features_denseblock4",
"checkpoint_file": "g_best_model_epoch_10.pth.tar"
},
"params": {
"labels": [
"0 (No Cardiomegaly)",
"1 (Cardiomegaly)"
]
}
},
"pneumonia": {
"MoIE_paths": {
"iter1": {
"base_path": "densenet121_1028_lr_0.01_SGD_temperature-lens_10.0_cov_0.2_alpha_0.5_selection-threshold_0.5_lm_256.0_lambda-lens_0.0001_alpha-KD_0.99_temperature-KD_20.0_hidden-layers_2020_input-size-pi_2048_layer_layer4",
"prev_path": "",
"explainer_path": "explainer",
"output": "g_outputs",
"checkpoint_g": "model_seq_epoch_153.pth.tar",
"checkpoint_residual": "model_residual_best_model_epoch_1.pth.tar"
},
"iter2": {
"base_path": "densenet121_1028_lr_0.01_SGD_temperature-lens_10.0_cov_0.2_alpha_0.5_selection-threshold_0.5_lm_256.0_lambda-lens_0.0001_alpha-KD_0.99_temperature-KD_20.0_hidden-layers_2020_input-size-pi_2048_layer_layer4",
"prev_path": "",
"explainer_path": "explainer",
"output": "g_outputs",
"checkpoint_g": "model_seq_epoch_5.pth.tar",
"checkpoint_residual": "model_residual_best_model_epoch_1.pth.tar"
},
"iter3": {
"base_path": "densenet121_1028_lr_0.01_SGD_temperature-lens_10.0_cov_0.35_alpha_0.5_selection-threshold_0.5_lm_256.0_lambda-lens_0.0001_alpha-KD_0.99_temperature-KD_20.0_hidden-layers_2020_input-size-pi_2048_layer_layer4",
"prev_path": "",
"explainer_path": "explainer",
"output": "g_outputs",
"checkpoint_g": "model_seq_epoch_42.pth.tar",
"checkpoint_residual": "model_residual_best_model_epoch_1.pth.tar"
},
"iter4": {
"base_path": "densenet121_1028_lr_0.01_SGD_temperature-lens_10.0_cov_0.2_alpha_0.5_selection-threshold_0.5_lm_256.0_lambda-lens_0.0001_alpha-KD_0.99_temperature-KD_20.0_hidden-layers_2020_input-size-pi_2048_layer_layer4",
"prev_path": "",
"explainer_path": "explainer",
"output": "g_outputs",
"checkpoint_g": "model_seq_epoch_14.pth.tar",
"checkpoint_residual": "model_residual_best_model_epoch_1.pth.tar"
}
},
"t": {
"checkpoint_t_path": "lr_0.01_epochs_60_loss_BCE_W_flattening_type_flatten_layer_features_denseblock4",
"checkpoint_file": "g_best_model_epoch_16.pth.tar"
},
"bb": {
"root_bb": "lr_0.01_epochs_60_loss_CE",
"checkpoint_bb": "g_best_model_epoch_4.pth.tar",
"img_size": 512,
"layer": "features_denseblock4",
"pool1": "average"
},
"params": {
"labels": [
"0 (No Pneumonia)",
"1 (Pneumonia)"
]
}
},
"edema": {
"MoIE_paths": {
"iter1": {
"base_path": "densenet121_1028_lr_0.01_SGD_temperature-lens_7.6_cov_0.25_alpha_0.5_selection-threshold_0.5_lm_128.0_lambda-lens_0.0001_alpha-KD_0.99_temperature-KD_20.0_hidden-layers_2020_input-size-pi_2048_layer_layer4",
"prev_path": "",
"explainer_path": "explainer",
"output": "g_outputs",
"checkpoint_g": "model_seq_epoch_16.pth.tar",
"checkpoint_residual": "model_residual_best_model_epoch_1.pth.tar"
},
"iter2": {
"base_path": "densenet121_1028_lr_0.01_SGD_temperature-lens_7.6_cov_0.25_alpha_0.5_selection-threshold_0.5_lm_128.0_lambda-lens_0.0001_alpha-KD_0.99_temperature-KD_20.0_hidden-layers_2020_input-size-pi_2048_layer_layer4",
"prev_path": "",
"explainer_path": "explainer",
"output": "g_outputs",
"checkpoint_g": "model_seq_epoch_24.pth.tar",
"checkpoint_residual": "model_residual_best_model_epoch_1.pth.tar"
},
"iter3": {
"base_path": "densenet121_1028_lr_0.01_SGD_temperature-lens_7.6_cov_0.25_alpha_0.5_selection-threshold_0.5_lm_128.0_lambda-lens_0.0001_alpha-KD_0.99_temperature-KD_20.0_hidden-layers_2020_input-size-pi_2048_layer_layer4",
"prev_path": "",
"explainer_path": "explainer",
"output": "g_outputs",
"checkpoint_g": "model_seq_epoch_124.pth.tar",
"checkpoint_residual": "model_residual_best_model_epoch_1.pth.tar"
},
"iter4": {
"base_path": "densenet121_1028_lr_0.01_SGD_temperature-lens_7.6_cov_0.25_alpha_0.5_selection-threshold_0.5_lm_128.0_lambda-lens_0.0001_alpha-KD_0.99_temperature-KD_20.0_hidden-layers_2020_input-size-pi_2048_layer_layer4",
"prev_path": "",
"explainer_path": "explainer",
"output": "g_outputs",
"checkpoint_g": "model_seq_epoch_149.pth.tar",
"checkpoint_residual": "model_residual_best_model_epoch_1.pth.tar"
},
"iter5": {
"base_path": "densenet121_1028_lr_0.01_SGD_temperature-lens_7.6_cov_0.15_alpha_0.5_selection-threshold_0.5_lm_128.0_lambda-lens_0.0001_alpha-KD_0.99_temperature-KD_20.0_hidden-layers_2020_input-size-pi_2048_layer_layer4",
"prev_path": "",
"explainer_path": "explainer",
"output": "g_outputs",
"checkpoint_g": "model_seq_epoch_96.pth.tar",
"checkpoint_residual": "model_residual_best_model_epoch_1.pth.tar"
}
},
"bb": {
"root_bb": "lr_0.01_epochs_60_loss_CE",
"checkpoint_bb": "g_best_model_epoch_4.pth.tar",
"img_size": 512,
"layer": "features_denseblock4",
"pool1": "average"
},
"t": {
"checkpoint_t_path": "lr_0.01_epochs_60_loss_BCE_W_flattening_type_flatten_layer_features_denseblock4",
"checkpoint_file": "g_best_model_epoch_11.pth.tar"
},
"params": {
"labels": [
"0 (No Edema)",
"1 (Edema)"
]
}
}
}