diff --git a/prerequisites.md b/prerequisites.md index 7372cb7..6c6a40a 100644 --- a/prerequisites.md +++ b/prerequisites.md @@ -35,7 +35,7 @@ chr1 HAVANA transcript 11869 14409 . + . gene_id chr1 HAVANA exon 11869 12227 . + . gene_id "ENSG00000223972.4"; transcript_id "ENST00000456328.2"; gene_type "pseudogene"; gene_status "KNOWN"; gene_name "DDX11L1"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "DDX11L1-002"; exon_number 1; exon_id "ENSE00002234944.1"; level 2; tag "basic"; havana_gene "OTTHUMG00000000961.2"; havana_transcript "OTTHUMT00000362751.1"; ``` -#### Mappability of each k-mer (Format: BEDGRAPH or BIGWIG) +#### Mappability of each k-mer (Format: BEDGRAPH) A tab-delimitted [bedgraph](http://genome.ucsc.edu/goldenPath/help/bedgraph.html) file containing the mappability of each k-mer is required. The bedgraph file should have 4 columns: chr, start_pos, end_pos, mappability. The bedgraph file should look like below: ``` chr1 0 10 0.25