add: badges in README and bump version in lock

Author: FedericaBrando

README.md

@@ -1,9 +1,13 @@
-# Oncodrive3D 
+# Oncodrive3D
 
 **Oncodrive3D** is a fast and accurate computational method designed to analyze patterns of somatic mutation across tumors, with the goal of identifying **three-dimensional (3D) clusters** of missense mutations and detecting genes under **positive selection**. 
 
 The method leverages **AlphaFold 2-predicted protein structures** and Predicted Aligned Error (PAE) to define residue contacts within the protein's 3D space. When available, it integrates **mutational profiles** to build an accurate background model of neutral mutagenesis. By applying a novel **rank-based statistical approach**, Oncodrive3D scores potential 3D clusters and computes empirical p-values."
 
+[![License: AGPL v3](https://img.shields.io/badge/License-AGPL_v3-blue.svg)](https://www.gnu.org/licenses/agpl-3.0)
+[![docker](https://img.shields.io/docker/v/bbglab/oncodrive3d?logo=docker)](https://hub.docker.com/r/bbglab/oncodrive3d)
+[![PyPI - Version](https://img.shields.io/pypi/v/oncodrive3d?logo=pypi)](https://pypi.org/project/Oncodrive3D/)
+
 ---
 
 ## License

pyproject.toml

@@ -15,7 +15,6 @@ readme = "README.md"
 requires-python = ">=3.10"
 license = {text = "GNU Affero General Public License v3 or later (AGPLv3+)"}
 keywords = ["bioinformatics", "positiveselection", "driversprediction", "bbglab"]
-classifiers = ["Private :: Do Not Upload"]
 dependencies = [
     "adjusttext==1.1.1",
     "aiohttp>=3.11.10",