view qseq uses letters ARND instead of ACTG

[imLew]

User diamond version 2.1.7 diamond view --daa ... --outfmt qseq produces sequences that contain the letters ARND instead of ACTG.

When I run diamond --outfmt qseq on the fastq files used to produce the daa file this does not happen. Furthermore the sequences have the same lengths and is a 1 to 1 correspondence between the letters (save a few Ns in the sequences using ACTG), so I don't think they are ambiguity codes.

[imLew]

example.zip
Here is an example running diamond view --outfmt 6 qseq -a this should produce sequences with ARND.

[terrycojones]

@bbuchfink Hi Benjamin. Do you have any idea about this issue? I hope you're well! Terry

[bbuchfink]

It will be fixed in the next release.

[terrycojones]

Thanks!

[imLew]

Thank you!