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Fix docstring typo
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bede committed Jan 29, 2024
1 parent c3e82bd commit c61409b
Showing 1 changed file with 3 additions and 1 deletion.
4 changes: 3 additions & 1 deletion src/hostile/cli.py
Original file line number Diff line number Diff line change
Expand Up @@ -131,7 +131,7 @@ def fetch(
"""
Download and cache indexes from object storage for use with hostile clean
:arg filename: filename of index to download
:arg name: name of index to download
:arg aligner: aligner(s) for which to download an index
:arg list: list available indexes
"""
Expand All @@ -143,8 +143,10 @@ def fetch(
print(name)
else:
if aligner == "minimap2" or aligner == "both":
logging.info(f"Looking for Minimap2 index {name}")
lib.ALIGNER.minimap2.value.check_index(name)
if aligner == "bowtie2" or aligner == "both":
logging.info(f"Looking for Bowtie2 index {name}")
lib.ALIGNER.bowtie2.value.check_index(name)


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