From c61409bab06166988c960372948be93aa016de0e Mon Sep 17 00:00:00 2001 From: Bede Constantinides Date: Mon, 29 Jan 2024 18:55:01 +0000 Subject: [PATCH] Fix docstring typo --- src/hostile/cli.py | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/src/hostile/cli.py b/src/hostile/cli.py index a2d478b..49f2d42 100644 --- a/src/hostile/cli.py +++ b/src/hostile/cli.py @@ -131,7 +131,7 @@ def fetch( """ Download and cache indexes from object storage for use with hostile clean - :arg filename: filename of index to download + :arg name: name of index to download :arg aligner: aligner(s) for which to download an index :arg list: list available indexes """ @@ -143,8 +143,10 @@ def fetch( print(name) else: if aligner == "minimap2" or aligner == "both": + logging.info(f"Looking for Minimap2 index {name}") lib.ALIGNER.minimap2.value.check_index(name) if aligner == "bowtie2" or aligner == "both": + logging.info(f"Looking for Bowtie2 index {name}") lib.ALIGNER.bowtie2.value.check_index(name)