From 21af23b5b1c06fdf865f5c4712d4a7a7e1f28f30 Mon Sep 17 00:00:00 2001 From: shane knapp Date: Wed, 15 Nov 2023 10:16:13 -0800 Subject: [PATCH] and i quote, help me escape from this bash hell --- deployments/biology/image/Dockerfile | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/deployments/biology/image/Dockerfile b/deployments/biology/image/Dockerfile index 0bd9e1ce5..f7ee84fce 100644 --- a/deployments/biology/image/Dockerfile +++ b/deployments/biology/image/Dockerfile @@ -183,8 +183,8 @@ COPY rsession.conf /etc/rstudio/rsession.conf COPY file-locks /etc/rstudio/file-locks # Install IRKernel -RUN echo /usr/bin/r -e "install.packages('IRkernel', version='1.2')" | /usr/bin/time -f "User\t%U\nSys\t%S\nReal\t%E\nCPU\t%P" /usr/bin/bash -RUN echo /usr/bin/r -e "IRkernel::installspec(prefix='${CONDA_DIR}')" | /usr/bin/time -f "User\t%U\nSys\t%S\nReal\t%E\nCPU\t%P" /usr/bin/bash +RUN echo "/usr/bin/r -e \"install.packages('IRkernel', version='1.2')\"" | /usr/bin/time -f "User\t%U\nSys\t%S\nReal\t%E\nCPU\t%P" /usr/bin/bash +RUN echo "/usr/bin/r -e \"IRkernel::installspec(prefix='${CONDA_DIR}')\"" | /usr/bin/time -f "User\t%U\nSys\t%S\nReal\t%E\nCPU\t%P" /usr/bin/bash # Install R packages, cleanup temp package download location COPY install.R /tmp/install.R