From 3ba28cc018ed5a12989dd29b262b904cf93d9a08 Mon Sep 17 00:00:00 2001
From: Jonathan Felder <felder@berkeley.edu>
Date: Fri, 30 Aug 2024 15:17:57 -0700
Subject: [PATCH] [DH-361] adding gh-scoped-creds for nature hub

---
 deployments/nature/config/common.yaml    |  2 ++
 deployments/nature/image/environment.yml | 11 +++++++----
 2 files changed, 9 insertions(+), 4 deletions(-)

diff --git a/deployments/nature/config/common.yaml b/deployments/nature/config/common.yaml
index 4ffa072de..a92e96c05 100644
--- a/deployments/nature/config/common.yaml
+++ b/deployments/nature/config/common.yaml
@@ -43,6 +43,8 @@ jupyterhub:
           c.WebPDFExporter.embed_images = True
     extraEnv:
       # Unset NotebookApp from hub/values. Necessary for recent lab versions.
+      GH_SCOPED_CREDS_CLIENT_ID: Iv23liGBW8jtMBP0inyw
+      GH_SCOPED_CREDS_APP_URL: https://github.com/apps/uc-berkeley-nature-hub-git-access
       JUPYTERHUB_SINGLEUSER_APP: "jupyter_server.serverapp.ServerApp"
     nodeSelector:
       hub.jupyter.org/pool-name: nature-pool
diff --git a/deployments/nature/image/environment.yml b/deployments/nature/image/environment.yml
index 7947296da..7e657a279 100644
--- a/deployments/nature/image/environment.yml
+++ b/deployments/nature/image/environment.yml
@@ -6,26 +6,29 @@ channels:
 dependencies:
 
 # Items required for basic level functionality
-- python==3.11.*
 - git==2.46.0
 - jupyter-resource-usage=1.1.0
 - jupyterhub==4.1.6
 - jupyterlab==4.2.5
 - jupyter_server==2.14.2
-- notebook==7.2.2
 - nbgitpuller==1.2.1
+- notebook==7.2.2
+- python==3.11.*
 
 # vscode
 - code-server==4.23.1
 - jupyter-vscode-proxy==0.6
 
 # other packages
-- seaborn==0.13.2
 - altair==5.4.1
+- gh-scoped-creds==4.1
 - ibis-framework[pandas,duckdb]==9.3.0
-- leafmap==0.36.10
 - jupyterlab-myst==2.4.2
+- leafmap==0.36.10
+- seaborn==0.13.2
+- streamlit==1.38.0
  
+# pip installed packages, conda is prefered
 - pip==24.2
 - pip:
   - nbconvert[webpdf]==7.16.4