diff --git a/deployments/datahub/images/default/environment.yml b/deployments/datahub/images/default/environment.yml index 1e5c0c52b..141e469e8 100644 --- a/deployments/datahub/images/default/environment.yml +++ b/deployments/datahub/images/default/environment.yml @@ -103,89 +103,89 @@ dependencies: # EPS 256, https://github.com/berkeley-dsep-infra/datahub/issues/1775 - obspy==1.3.0 +# error converting to PDF https://github.com/berkeley-dsep-infra/datahub/issues/5062 +- nbconvert[webpdf] + +# eep 153; spring 2024 +- requests==2.31.0 +- Pint==0.17 +# Google spreadsheets, Eric Van Dusen / Keeley Takimoto / Modules +- gspread-pandas==2.3.0 +- gspread==4.0.1 + +# eps 109; fall 2024 +- ffmpeg-python==0.2.0 + +# issue #875, global 150Q/pacs 190 - fall 2024 +- wordcloud==1.8.1 + +# issue #929, SW 282 - fall 2024 +- pyreadstat==1.1.2 + +# issue 954, EPS24 - fall 2019 +# balaji to confirm is this is still being taught +- xarray==0.19.0 + +# issue 1001, Physics 188/288 - fall 2024 +- umap-learn==0.5.1 +- hdbscan==0.8.31 +- getdist==1.3.1 +- tensorflow-hub==0.12.0 +- tensorflow-probability==0.13.0 + +# espm 125/bio 105; fall 2022 +# see https://github.com/berkeley-dsep-infra/datahub/issues/1796 +# balaji to confirm if this is still being taught +- bitarray==2.3.0 + +# ds198 mch infodemiology, fall 2020/spring 2021 +# google apis +# balaji to check +- google-api-python-client==2.15.0 +- google-auth-httplib2==0.1.0 +- google-auth-oauthlib==0.4.5 +- google==3.0.0 + +# issue 1847; LS 22 spring 2021 +# balaji to reach out and confirm it's being taught SP24 +- graphviz==0.17 + +# issue #1903, data h195A fall 2020+ +# still required according to ericvd +- habanero==0.7.4 + +# https://github.com/berkeley-dsep-infra/datahub/issues/2950 +# Needed to work with a new enough version of httplib2 +- httplib2>=0.20.2 + +# Used by MCB32, but incompatible with ipywidgets 8.x +- qgrid==1.3.1 + - pip: - -r /tmp/infra-requirements.txt # Econ 148, Spring 2023 https://github.com/berkeley-dsep-infra/datahub/issues/4093 - pycountry-convert==0.7.2 - # error converting to PDF https://github.com/berkeley-dsep-infra/datahub/issues/5062 - - nbconvert[webpdf] # # Former contents of requirements.txt # Some things were moved up to conda above. # # Until https://github.com/okpy/ok-client/pull/473 is merged - - git+https://github.com/yuvipanda/ok-client@6961d778741fe61911be4d00beff9bd8afc1edf7 + # - git+https://github.com/yuvipanda/ok-client@6961d778741fe61911be4d00beff9bd8afc1edf7 + - okpy # - jupyter-shiny-proxy==1.1 # # nb2pdf==0.6.2 commented out by sknapp 06.10.2023 to unblock https://github.com/berkeley-dsep-infra/datahub/issues/5062 # - # astr 128/256; spring 2021 - - astroquery==0.4.6 - - astropy==5.1 - - dustmaps==1.0.9 - - george==0.4.0 - - exoplanet==0.5.2 - - torch==1.13.1 - - torchvision==0.14.1 - - pyvo==1.1 - - joblib==1.3.1 - - theano-pymc==1.1.2 - - pymc3==3.11.2 - - # eep 153; spring 2019 - - requests==2.31.0 - - Pint==0.17 - # Google spreadsheets, Eric Van Dusen / Keeley Takimoto / Modules - - gspread-pandas==2.3.0 - - gspread==4.0.1 - - # eps 109; fall 2019 - - ffmpeg-python==0.2.0 - - # issue #875, global 150Q/pacs 190 - fall 2019 - - wordcloud==1.8.1 - - # issue #929, SW 282 - fall 2019 - - pyreadstat==1.1.2 - - # issue 954, EPS24 - fall 2019 - - xarray==0.19.0 - - # issue 1001, Physics 188/288 - fall 2019 - - umap-learn==0.5.1 - - hdbscan==0.8.31 - - # espm 125/bio 105; fall 2019 + # espm 125/bio 105; fall 2022 # see https://github.com/berkeley-dsep-infra/datahub/issues/1796 - - bitarray==2.3.0 + # balaji to confirm if this is still being taught - nlmpy==1.0.1 - # physics 188/288 fall, 2019 - - getdist==1.3.1 - - tensorflow-hub==0.12.0 - - tensorflow-probability==0.13.0 - # cs16A/B, spring 2020 - lcapy==0.96 - # ds198 mch infodemiology, fall 2020/spring 2021 - # google apis - - google-api-python-client==2.15.0 - - google-auth-httplib2==0.1.0 - - google-auth-oauthlib==0.4.5 - - google==3.0.0 - - # issue 1847; LS 22 spring 2021 - - graphviz==0.17 - - # issue #1903, data h195A fall 2020 - - habanero==0.7.4 - - # https://github.com/berkeley-dsep-infra/datahub/issues/1981 - - ipycanvas==0.9.0 - # prob140 2021 Spring # sknapp 2023-12-15: we will eventually move prob140 back to datahub in FA24 # https://jira-secure.berkeley.edu/browse/DH-203 @@ -194,10 +194,3 @@ dependencies: # IB 105 / ESPM 125, Fall 2021 - https://github.com/berkeley-dsep-infra/datahub/issues/2696 - geonomics==1.3.0 - - # https://github.com/berkeley-dsep-infra/datahub/issues/2950 - # Needed to work with a new enough version of httplib2 - - httplib2>=0.20.2 - - # Used by MCB32, but incompatible with ipywidgets 8.x - - qgrid==1.3.1