Merge pull request #6 from ryanlovett/octave

Install octave and related kernels.

apt.txt

@@ -1,9 +1,3 @@
-# Some linux packages for basic terminal work, particularly
-# oriented at users new to Unix/cmd line environments.
-
-# installing less as more just isn't enough
-less
-
 # Basic unix tools
 man
 man-db
@@ -18,23 +12,8 @@ wget
 # Core text editors on a *nix box: vim
 vim
 
-# A couple of CLI editors that are easier than vim
-# micro  # currently not working on 18.04
-nano
-jed
-jed-extra
-
-# powerful terminal-based file manager, better than the one in JLab
-mc
-
-# for easily managing multiple repositories with one command (perl-doc
-# is needed for its help pages to work)
-mr
-perl-doc
-
 # Regular build tools for compiling common stuff
 build-essential
-gfortran
 
 # Dependencies for nbconvert
 texlive-xetex
@@ -48,50 +27,28 @@ lmodern
 pandoc
 latexdiff
 
-# Some useful git utilities use basic Ruby
-ruby
-
-# Other niceties for command-line work and life
-ack   # powerful grep-like tool
-pydf  # colorized disk usage
-tmux
-screen
-htop
-nnn   # cmd line file manager
-zsh
-rsync
-tig  # console UI for git
-multitail
-
-# For later, these are not available in 18.04
-#browsh # text-based web browser, occasionally handy
-#dasel  # json/yml/csv/etc data wrangling at the terminal
-#fzf   # fuzzy file finder
-
 ## This section adds tools for desktop environment usage
 dbus-x11
+xfce4
+xfce4-panel
+xfce4-session
+xfce4-settings
 xorg
 xubuntu-icon-theme
-xfce4
-xfce4-goodies
-xclip
-xsel
+tigervnc-standalone-server
+tigervnc-xorg-extension
 firefox
 chromium-browser
 
 # GUI text editors
 vim-gtk3
 gedit
 
-# Git clients and tools
-git-gui
-gitg
-qgit
-meld
-
-# For jupyter-tree-download. Ref: https://github.com/berkeley-dsep-infra/datahub/issues/3979			
+# For jupyter-tree-download
 zip
 
 # playwright deps https://jira-secure.berkeley.edu/browse/DH-305
 libnss3
 libnspr4
+
+octave

environment.yml

@@ -5,59 +5,40 @@ channels:
 - pytorch
 
 dependencies:
-- python==3.11.*
-- git==2.39.1
-- jupyter-resource-usage==1.0.0
-- jupyterlab==4.0.11
-- jupyterlab-favorites==3.0.0
-- jupyterlab_server==2.23.0
-- jupyterlab_widgets==3.0.8
-- jupyter_server==2.7.0
-- nbgitpuller==1.2.1
-- notebook==7.0.7
+- jupyterhub==4.1.6
+- python==3.12.*
+- duckdb==1.0.0
 - folium==0.14.0
+- gh-scoped-creds==4.1
+- git==2.39.1
 - h5netcdf==1.0.2
-- ipywidgets==8.0.7
+- ipywidgets==8.1.5
 - jupysql==0.8.0
 - jupyter-archive==3.4.0
-- matplotlib==3.7.1
-- mdit-py-plugins==0.4.0
-- numpy==1.24.2
-- pandas==2.0.2
-- plotly==5.13.1
-- requests==2.28.2
-- scikit-image==0.19.3
-- scikit-learn==1.2.2
-- scipy==1.10.1
-- seaborn==0.12.2
-- statsmodels==0.14.0
-- tensorflow-cpu==2.12.1
-- sqlalchemy==2.0.16
-- mlxtend==0.23.0
-# Spring 2024 data 100
-- pytorch==2.1.2
-- cpuonly==2.0
-- transformers==4.37.1
-# Spring 2024 table demos
-- lxml==5.1.0
-# Spring 2024 Econ 148 Packages
-- geopandas==0.14.2
-- geopy==2.4.1
-- lifelines==0.27.8
-- pycountry==22.3.5
+- jupyterlab==4.2.5
+- jupyterlab-favorites==3.0.0
+- jupyterlab_server==2.27.3
+- jupyterlab_widgets==3.0.13
+- jupyter-resource-usage==1.1.0
+- jupyter_server==2.14.2
+- matplotlib==3.9.2
+- mdit-py-plugins==0.4.2
+- nbconvert==7.16.4
+- nbgitpuller==1.2.1
+- notebook==7.2.2
+- numpy==2.1.1
+- octave_kernel==0.36.0
+- pandas==2.2.3
+- playwright==1.47.2
+- plotly==5.24.1
+- pytest-notebook==0.10.0
+- scikit-image==0.24.0
+- scikit-learn==1.5.2
+- scipy==1.14.1
+- seaborn==0.13.2
+- statsmodels==0.14.3
+- xeus-octave==0.2.0
 - pip
 - pip:
-  # - -r infra-requirements.txt
-  - ipywidgets==8.0.7
-  # disable until fixed (probably this:  https://github.com/jupyterlab/jupyter-collaboration/issues/162)
-  # - jupyter_collaboration==1.0.1
-  - jupyterhub==4.1.6
-  - nbconvert[webpdf]
-  #  - pyppeteer==2.0.0
-  - pytest-notebook==0.8.1
-  - gh-scoped-creds==4.1
   - git+https://github.com/shaneknapp/python-popularity-contest.git@add-error-handling
-  - ydata-profiling==4.6.4
-  - otter-grader==5.4.0
-  - duckdb==0.10.1
-  - duckdb_engine==0.11.2
+  - jupyter-remote-desktop-proxy==2.0.1