DESCRIPTION

Package: karyoploteR
Type: Package
Title: Plot customizable linear genomes displaying arbitrary data
Version: 1.29.1
Date: 2017-05-03
Authors@R: 
  c(person(given = "Bernat",
           family = "Gel",
           role = c("aut", "cre"),
           email = "bgel@igtp.cat",
           comment = c(ORCID = "0000-0001-8878-349X")))
Description: karyoploteR creates karyotype plots of arbitrary genomes and offers
    a complete set of functions to plot arbitrary data on them. It mimicks many
    R base graphics functions coupling them with a coordinate change function 
    automatically mapping the chromosome and data coordinates into the plot 
    coordinates. In addition to the provided data plotting functions, it is 
    easy to add new ones.
License: Artistic-2.0
Depends:
    R (>= 3.4),
    regioneR,
    GenomicRanges,
    methods
Imports:
    regioneR,
    GenomicRanges,
    IRanges,
    Rsamtools,
    stats,
    graphics,
    memoise,
    rtracklayer,
    GenomeInfoDb,
    S4Vectors,
    biovizBase,
    digest,
    bezier,
    GenomicFeatures,
    bamsignals,
    AnnotationDbi,
    grDevices,
    VariantAnnotation
Suggests:
    BiocStyle,
    knitr,
    rmarkdown,
    markdown,
    testthat,
    magrittr,
    BSgenome.Hsapiens.UCSC.hg19,
    BSgenome.Hsapiens.UCSC.hg19.masked,
    TxDb.Hsapiens.UCSC.hg19.knownGene,
    TxDb.Mmusculus.UCSC.mm10.knownGene,
    org.Hs.eg.db,
    org.Mm.eg.db,
    pasillaBamSubset
URL: https://github.com/bernatgel/karyoploteR
BugReports: https://github.com/bernatgel/karyoploteR/issues
VignetteBuilder: knitr
biocViews: Visualization, CopyNumberVariation, Sequencing, Coverage, DNASeq, ChIPSeq, MethylSeq, DataImport, OneChannel
NeedsCompilation: no
Encoding: UTF-8
RoxygenNote: 7.2.3