gh-pages.yml

# based onhttps://github.com/horosin/pages-deploy
# and https://lucacozzuto.medium.com/automatic-reports-with-bookdown-and-github-actions-3c19498394aa
# and https://stackoverflow.com/questions/76723921/install-a-github-r-package-for-a-github-action
# and https://docs.github.com/en/actions/learn-github-actions/variables
# and https://github.com/salimkayabasi/drawio-github-action-installation/blob/main/.github/workflows/drawio.yml
name: github pages

on:
  push:
    branches:
      - master
    paths:
      - 'documentation/**'
      - '.github/workflows/**'
  pull_request:
    paths:
      - 'documentation/**'
      - '.github/workflows/**'

env:
    DRAWIO_DISABLE_UPDATE: true
    DISPLAY: :99.0
    CONFIG_FILE: config.yml
    R_ENVIRONMENT: github

jobs:
    bookdown:
        name: Render-Book
        runs-on: ubuntu-20.04
        defaults:
            run:
              working-directory: ./documentation
        steps:
            - uses: actions/checkout@v4
            - uses: r-lib/actions/setup-r@v2
              with:
                r-version: 'release'
                rtools-version: '42'
                use-public-rspm: true
            - uses: r-lib/actions/setup-pandoc@v2
            - name: Install TinyTeX
              uses: r-lib/actions/setup-tinytex@v2
              env:
                TINYTEX_INSTALLER: TinyTeX
            - name: Instaling librsvg2
              timeout-minutes: 3
              run: |
                sudo apt-get install librsvg2-bin
            - name: Instaling drawio
              timeout-minutes: 3
              run: |
                  Xvfb :99 -screen 0 1024x768x24 > /dev/null 2>&1 &
                  sudo mkdir -p /run/user/1001
                  sudo chmod -R 777 /run/user/1001
                  sudo snap install drawio
            - name: Install packages
              run: Rscript -e 'install.packages(c("tidyverse", "rmarkdown", "bookdown", "config", "remotes", "webshot", "readr", "dplyr", "DT", "plotly", "knitr", "knitrdrawio", "config", "ggplot2", "ComplexUpset", "snakecase", "readxl", "shinyLP"))'
            - name: Install knitrdrawio
              run: Rscript -e 'remotes::install_url("https://github.com/rchaput/knitrdrawio/archive/refs/tags/v0.2.2.tar.gz")'
            - name: Install phantomjs
              run: Rscript -e 'webshot::install_phantomjs()'
            - name: Render Book
              run: Rscript -e 'bookdown::render_book("index.Rmd", "all")'
            - uses: actions/upload-artifact@v4
              with:
                name: build
                path: ./documentation/build
                if-no-files-found: error
    checkout-and-deploy:
        runs-on: ubuntu-20.04
        needs: bookdown
        steps:
            - name: Checkout
              uses: actions/checkout@v4
            - name: Download artifact
              uses: actions/download-artifact@v4
              with:
                # Artifact name
                name: build
                # Destination path
                path: docs
            - name: Deploy to GitHub Pages
              uses: Cecilapp/GitHub-Pages-deploy@v3
              env:
                GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
              with:
                build_dir: docs
                branch: gh-pages