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simonfruh committed Jun 12, 2024
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Expand Up @@ -245,7 +245,7 @@ <h1>Preface<a href="index.html#preface" class="anchor-section" aria-label="Ancho
<div id="history-of-sysid-and-sysndd" class="section level2 unnumbered hasAnchor">
<h2>History of SysID and SysNDD<a href="index.html#history-of-sysid-and-sysndd" class="anchor-section" aria-label="Anchor link to header"></a></h2>
<p>SysNDD is based on its predecessor SysID, conceived by Annette Schenck and Christiane Zweier in 2009 and published in 2016 <span class="citation">(<a href="#ref-kochinke_systematic_2016">Kochinke et al., 2016</a>)</span>. Christiane Zweier has been involved in establishing and updating SysID from its start. She has since performed and coordinated curation and regular updates.</p>
<p>The PHP based SysID web tool (Yii 2 framework) was however not further developed and maintained besides necessary bugfixes. After the maintenance agreement for the original server at the CMBI at Radboud University in Nijmegen ran out, the installation was moved to a virtual server at the Department for BioMedical Research (DBMR) at the University Bern. The former link from the initial publication is redirected so it still works. The legacy code base was updated to allow installation and security fixes and to be uploaded to a <a href="https://github.com/berntpopp/SysID">GitHub repository (SysID)</a>. After the first SysNDD native updates to the curated entities, we display a warning popup on the SysID page to show that the content is not curated any more.</p>
<p>The PHP based SysID web tool (Yii 2 framework) was however not further developed and maintained besides necessary bugfixes. After the maintenance agreement for the original server at the CMBI at Radboud University in Nijmegen ran out, the installation was moved to a virtual server at the Department for BioMedical Research (DBMR) at the University of Bern. The former link from the initial publication is redirected so it still works. The legacy code base was updated to allow installation and security fixes and to be uploaded to a <a href="https://github.com/berntpopp/SysID">GitHub repository (SysID)</a>. After the first SysNDD native updates to the curated entities, we display a warning popup on the SysID page to show that the content is not curated any more.</p>
<p>In 2019 the chance arose to integrate the SysID curation effort with the Orphanet resource, supported by ERN ITHACA. In the process of aligning the curation and naming conventions for genes, diseases and phenotypes we decided to redesign the database and web tool.</p>
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