diff --git a/README.md b/README.md index bd3ae34..96e1362 100644 --- a/README.md +++ b/README.md @@ -23,6 +23,19 @@ Freesurfer data has to be in [BIDS format](http://bids.neuroimaging.io), i.e. subject folders should be named *sub-*, (e.g., sub-01, sub-02...). +**Important:** The data has to be preprocessed with +Freesurfer's 5.3.0 installation, not the 5.3.0-HCP installation. +The [fliem/freesurfer:v6.0.0-3-FSv5.3.0-1](https://hub.docker.com/r/fliem/freesurfer/tags/) +docker image can be used for that and can be run like this: + + docker run -ti --rm \ + -v /Users/filo/data/ds005:/bids_dataset:ro \ + -v /Users/filo/outputs:/outputs \ + fliem/freesurfer:v6.0.0-3-FSv5.3.0-1 \ + /bids_dataset /outputs participant --participant_label 01 \ + --license_key "XXXXXXXX" + + ## Models **Liem2016__OCI_norm**: Model trained on subjects that have no objective cognitive impairment (OCI) (*OCI norm* in Liem et al., 2017).