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pyproject.toml
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pyproject.toml
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[build-system]
requires = ["hatchling", "hatch-vcs"]
build-backend = "hatchling.build"
[project]
name = "giga_connectome"
description = "Generate connectome from fMRIPrep outputs"
readme = "README.md"
requires-python = ">=3.9"
license = { file="LICENSE" }
authors = [
{ name="Hao-Ting Wang", email="[email protected]" },
]
classifiers = [
"Programming Language :: Python :: 3",
"Programming Language :: Python :: 3.9",
"Programming Language :: Python :: 3.10",
"Programming Language :: Python :: 3.11",
"Programming Language :: Python :: 3.12",
"Programming Language :: Python :: 3.13",
]
dependencies = [
"nilearn[plotting] >=0.10.3",
"pybids >=0.15.0, <0.16.0",
"templateflow < 23.0.0",
"setuptools",
"jinja2 >= 2.0",
"rich",
]
dynamic = ["version"]
[project.scripts]
giga_connectome = "giga_connectome.run:main"
[project.optional-dependencies]
dev = [
"black",
"flake8",
"pre-commit",
"giga_connectome[test]",
'tox',
'mypy',
'types-all',
'pandas-stubs',
'types-tqdm'
]
test = [
"pytest",
"pytest-cov",
]
docs = [
"sphinx",
"sphinx_rtd_theme",
"myst-parser",
"sphinx-argparse"
]
# Aliases
tests = ["giga_connectome[test]"]
[project.urls]
"Homepage" = "https://github.com/bids-apps/giga_connectome"
"Documentation" = "https://giga-connectome.readthedocs.io/en/latest/"
[tool.hatch.version]
source = "vcs"
[tool.hatch.build.hooks.vcs]
version-file = "giga_connectome/_version.py"
[tool.hatch.build.targets.sdist]
exclude = [".git_archival.txt"]
[tool.hatch.build.targets.wheel]
packages = ["giga_connectome"]
exclude = [
".github",
"giga_connectome/data/test_data"
]
[tool.black]
target-version = ['py38']
exclude = "giga_connectome/_version.py"
line-length = 79
[tool.mypy]
check_untyped_defs = true
disallow_any_generics = true
disallow_incomplete_defs = true
disallow_untyped_defs = true
enable_error_code = ["ignore-without-code", "redundant-expr"] # "truthy-bool"
no_implicit_optional = true
show_error_codes = true
# strict = true
warn_redundant_casts = true
warn_unreachable = true
warn_unused_ignores = true
[[tool.mypy.overrides]]
ignore_missing_imports = true
module = [
"bids.*",
"giga_connectome._version",
"h5py.*",
"nibabel.*",
"nilearn.*",
"nilearn.connectome.*",
"nilearn.image.*",
"nilearn.interfaces.*",
"nilearn.maskers.*",
"nilearn.masking.*",
"rich.*",
"scipy.ndimage.*",
"templateflow.*",
]
[[tool.mypy.overrides]]
ignore_errors = true
module = [
'giga_connectome.tests.*',
'download_templates',
'conf',
]
[tool.pytest.ini_options]
minversion = "7"
log_cli_level = "INFO"
xfail_strict = true
testpaths = ["giga_connectome/tests"]
addopts = ["-ra", "--strict-config", "--strict-markers", "--doctest-modules", "-v"]
markers = [
"smoke: smoke tests that will run on a downsampled real dataset (deselect with '-m \"not smoke\"')",
]
# filterwarnings = ["error"]