0.5.0

What's Changed

• [MAINT] add citation.cff file and validation workflow by @Remi-Gau in #55
• [MAINT] add workflow to update precommit hooks by @Remi-Gau in #56
• [MAINT] run test suite with python 3.12 by @Remi-Gau in #57
• [MAINT] pin dependencies for docker build by @Remi-Gau in #59
• Bump actions/setup-python from 4 to 5 by @dependabot in #60
• Bump actions/checkout from 2 to 4 by @dependabot in #61
• [MAINT] use sphinx argparse to automatically render the cli arguments doc by @Remi-Gau in #71
• [MAINT] run pre-commit in CI to check style by @Remi-Gau in #72
• [MAINT] use tox to install test data by @Remi-Gau in #73
• [MAINT] bump nilearn version to 0.10.2 by @Remi-Gau in #67
• [ENH] use logger instead of print statements by @Remi-Gau in #74
• [DOC] add badges to readme by @Remi-Gau in #85
• [ENH] rerunning the app overrides old files and logs a warning by @Remi-Gau in #83
• [BOT] update pre-commit hooks by @github-actions in #87
• [STY] apply pre-commit hooks by @Remi-Gau in #88
• [BOT] update pre-commit hooks by @github-actions in #90
• [BOT] update pre-commit hooks by @github-actions in #93
• [DOC] update changelog by @Remi-Gau in #84
• [ENH] add methods section by @Remi-Gau in #77
• update the commit hash of mist2templateflow by @htwangtw in #98
• [BOT] update pre-commit hooks by @github-actions in #99
• [STY] apply the new black by @Remi-Gau in #100
• Bump codecov/codecov-action from 3 to 4 by @dependabot in #101
• Bump peter-evans/create-pull-request from 5 to 6 by @dependabot in #102
• Bump actions/cache from 3 to 4 by @dependabot in #103
• Bump pre-commit/action from 3.0.0 to 3.0.1 by @dependabot in #105
• [BOT] update pre-commit hooks by @github-actions in #104
• [MAINT] follow several recommendations from the Scientific Python Library Development Guide by @Remi-Gau in #58
• [ENH] switch tqdm for rich progress bar by @Remi-Gau in #95
• [MAINT] bump all artifact actions at once by @Remi-Gau in #107
• Bump actions/upload-artifact from 3 to 4 by @dependabot in #91
• Bump actions/download-artifact from 3 to 4 by @dependabot in #92
• [ENH] start using mypy and updating types by @Remi-Gau in #86
• change the default atlas to Schaefer20187Networks by @htwangtw in #110
• Remove all group level related process from the workflow by @htwangtw in #112
• Improve documentation on customised atlas and denoising strategy by @htwangtw in #108
• DOCS gigaconnectome workflow with flow chart by @htwangtw in #114
• [ENH] start bidsifying output by @Remi-Gau in #80
• remove psc as an option for standardising output by @htwangtw in #113
• [ENH] add HTML reports for each atlas / masked image by @Remi-Gau in #115
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #122
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #125
• [MAINT] add docker GHA worklow by @htwangtw in #126
• [MAINT] update codecov badge by @Remi-Gau in #128
• [DOC] add docker badge and update docs and links by @Remi-Gau in #130
• ENH harvard oxford atlas by @htwangtw in #132
• JOSS submision by @htwangtw in #118
• REL-0.5.0 by @htwangtw in #131

New Contributors

• @Remi-Gau made their first contribution in #55
• @dependabot made their first contribution in #60
• @github-actions made their first contribution in #87
• @pre-commit-ci made their first contribution in #122

Full Changelog: 0.4.1...0.5.0