Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Test latest stable version of BIDS apps that fail on main #7

Open
Remi-Gau opened this issue May 19, 2023 · 0 comments
Open

Test latest stable version of BIDS apps that fail on main #7

Remi-Gau opened this issue May 19, 2023 · 0 comments

Comments

@Remi-Gau
Copy link
Contributor

Remi-Gau commented May 19, 2023

include

  • only include apps that fail on the default branch
repo dockerhub status
cpac https://hub.docker.com/r/bids/c-pac/tags 🚫 Runs but does not do anything: https://github.com/bids-apps/CPAC/actions/runs/5019946870/jobs/9000962724
hcppipelines https://hub.docker.com/r/bids/hcppipelines/tags ❓ image too big to run on github ; 🚫 in circle ci missing metadata in data to run
nipypelines https://hub.docker.com/r/bids/nipypelines/tags
oppni https://hub.docker.com/r/bids/oppni/tags 🚫 latest version fails in CI: bids-apps/oppni#28
mindboggle https://hub.docker.com/r/bids/mindboggle/tags ❓ Test takes more than 6 hours: bids-apps/mindboggle#23
ndmg https://hub.docker.com/r/bids/ndmg/tags ✅ seems to work 🚀 https://github.com/bids-apps/ndmg/actions/runs/5033670590/jobs/9028039284
afni_proc https://hub.docker.com/r/bids/afni_proc/tags ✅ seems to work 🚀 https://github.com/bids-apps/afni_proc/actions/runs/5026514966
magetbrain https://hub.docker.com/r/bids/magetbrain/tags 🚫 latest version fails in CI: bids-apps/MAGeTbrain#13 ; checked with developper and this app will be rewritten
aa https://hub.docker.com/r/bids/aa/tags 🚫 cannot run in github CI
tracula https://hub.docker.com/r/bids/tracula/tags WIP. participant level tested and so far it works. bids-apps/tracula#33
baracus https://hub.docker.com/r/bids/baracus/tags
mrtrix3_connectome https://hub.docker.com/r/bids/mrtrix3_connectome Some part of the workflow seem to fail at the moment :bids-apps/MRtrix3_connectome#124
dparsf https://hub.docker.com/r/bids/dparsf/tags ✅ seems to work 🚀. See logs here: bids-apps/DPARSF#15 (comment)
freesurfer https://hub.docker.com/r/bids/freesurfer ✅ as far as I can tell this works: see log of CI run here: bids-apps/freesurfer#73 (comment)

exclude

name reason
hyperalignement no latest tag: https://hub.docker.com/r/bids/hyperalignment/tags
qap no latest tag: https://hub.docker.com/r/bids/qap/tags
FibreDensityAndCrosssection Unmaintainted
niak Unmaintainted
BROCCOLI missing test data: bids-apps/BROCCOLI#13
SyntheticDiffusion missing test data: bids-apps/SyntheticDiffusion#1
rsHRF does not run on typical fmriprep data
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant