From c42e88e4e8cf95ce1e5957ab28cad07d26e24349 Mon Sep 17 00:00:00 2001 From: fabianegli Date: Tue, 5 Apr 2022 15:11:53 +0200 Subject: [PATCH] [MAINT] remove validate_sdrfs.sh --- validate_sdrfs.sh | 31 ------------------------------- 1 file changed, 31 deletions(-) delete mode 100755 validate_sdrfs.sh diff --git a/validate_sdrfs.sh b/validate_sdrfs.sh deleted file mode 100755 index 0d4fa27..0000000 --- a/validate_sdrfs.sh +++ /dev/null @@ -1,31 +0,0 @@ -#!/bin/bash - -#pip install sdrf-pipelines - -parse_sdrf convert-maxquant -s "https://raw.githubusercontent.com/bigbio/proteomics-metadata-standard/master/annotated-projects/PXD000612/sdrf.tsv" -o1 param.xml -o2 design.txt -parse_sdrf convert-openms -t2 -l -s "https://raw.githubusercontent.com/bigbio/proteomics-metadata-standard/master/annotated-projects/PXD018241/sdrf-phosphoproteomics.tsv" - -#parse_sdrf convert-openms -s "https://raw.githubusercontent.com/bigbio/proteomics-metadata-standard/master/annotated-projects/PXD009602/sdrf.tsv" -#parse_sdrf convert-openms -s "https://raw.githubusercontent.com/bigbio/proteomics-metadata-standard/master/annotated-projects/PXD011799/sdrf.tsv" -#parse_sdrf convert-openms -s "https://raw.githubusercontent.com/bigbio/proteomics-metadata-standard/master/annotated-projects/PXD000612/sdrf.tsv" -#parse_sdrf convert-openms -s "https://raw.githubusercontent.com/bigbio/proteomics-metadata-standard/master/annotated-projects/PXD001819/sdrf.tsv" -#parse_sdrf convert-openms -s "https://raw.githubusercontent.com/bigbio/proteomics-metadata-standard/master/annotated-projects/PXD001819/sdrf.tsv" -#parse_sdrf convert-openms -s "https://raw.githubusercontent.com/bigbio/proteomics-metadata-standard/master/annotated-projects/PXD002049/sdrf.tsv" -#parse_sdrf convert-openms -s "https://raw.githubusercontent.com/bigbio/proteomics-metadata-standard/master/annotated-projects/PXD002088/sdrf.tsv" -#parse_sdrf convert-openms -s "https://raw.githubusercontent.com/bigbio/proteomics-metadata-standard/master/annotated-projects/PXD003133/sdrf.tsv" -#parse_sdrf convert-openms -s "https://raw.githubusercontent.com/bigbio/proteomics-metadata-standard/master/annotated-projects/PXD004452/sdrf.tsv" -#parse_sdrf convert-openms -s "https://raw.githubusercontent.com/bigbio/proteomics-metadata-standard/master/annotated-projects/PXD005940/sdrf.tsv" -#parse_sdrf convert-openms -s "https://raw.githubusercontent.com/bigbio/proteomics-metadata-standard/master/annotated-projects/PXD005942/sdrf.tsv" -#parse_sdrf convert-openms -s "https://raw.githubusercontent.com/bigbio/proteomics-metadata-standard/master/annotated-projects/PXD005946/sdrf.tsv" -#parse_sdrf convert-openms -s "https://raw.githubusercontent.com/bigbio/proteomics-metadata-standard/master/annotated-projects/PXD006401/sdrf.tsv" -#parse_sdrf convert-openms -s "https://raw.githubusercontent.com/bigbio/proteomics-metadata-standard/master/annotated-projects/PXD006675/sdrf.tsv" -#parse_sdrf convert-openms -s "https://raw.githubusercontent.com/bigbio/proteomics-metadata-standard/master/annotated-projects/PXD006914/sdrf.tsv" -#parse_sdrf convert-openms -s "https://raw.githubusercontent.com/bigbio/proteomics-metadata-standard/master/annotated-projects/PXD008840/sdrf.tsv" -#parse_sdrf convert-openms -s "https://raw.githubusercontent.com/bigbio/proteomics-metadata-standard/master/annotated-projects/PXD009602/sdrf.tsv" -#parse_sdrf convert-openms -s "https://raw.githubusercontent.com/bigbio/proteomics-metadata-standard/master/annotated-projects/PXD010154/sdrf.tsv" -#parse_sdrf convert-openms -s "https://raw.githubusercontent.com/bigbio/proteomics-metadata-standard/master/annotated-projects/PXD012203/sdrf.tsv" -##parse_sdrf convert-openms -s "https://raw.githubusercontent.com/bigbio/proteomics-metadata-standard/master/annotated-projects/PXD017710/sdrf.tsv" SILAC/TMT -#parse_sdrf convert-openms -s "https://raw.githubusercontent.com/bigbio/proteomics-metadata-standard/master/annotated-projects/PXD018117/sdrf.tsv" -#parse_sdrf convert-openms -s "https://raw.githubusercontent.com/bigbio/proteomics-metadata-standard/master/annotated-projects/PXD011799/sdrf.tsv" - -