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No easy solution available here. This is because the Processing framework in QGIS, cannot add multiple files which are not common gdal layers. The solution would be to add a textfile with all files that should be merged but that would also have to be done manually.
The tool is semi-working but I have to write the path manually since I am unable to select more than one files.
Seem to remember sometime back from several qgis versions (and perhaps versions of this plugin) back that this worked.
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