ci.yml

name: CI

on: [push]

jobs:
  build:

    runs-on: ubuntu-latest
    strategy:
      matrix:
        python-version:
          - '3.8'
          - '3.9'
          - '3.10'
          - '3.11'

    steps:
      - name: Install Python via conda.
        uses: s-weigand/setup-conda@v1
        with:
          python-version: ${{ matrix.python-version }}
          conda-channels: defaults,bioconda,conda-forge
      - name: Checkout repository
        uses: actions/checkout@v2
        with:
          lfs: true
      - name: Install mamba.
        run: conda install -y mamba
      - name: Install test dependencies via pip
        run: pip install -r requirements/test_black.txt
      - name: Run tests
        run: pytest
      - name: Create text report
        run: coverage report
      - name: Create XML report for codacy
        run: coverage xml
      - name: Coveralls
        uses: AndreMiras/coveralls-python-action@develop
      - name: Run codacy-coverage-reporter
        uses: codacy/codacy-coverage-reporter-action@master
        with:
          project-token: ${{ secrets.CODACY_PROJECT_TOKEN }}
          coverage-reports: coverage.xml
        if: ${{ matrix.python-version == '3.7' }}
      - name: Check style with black
        run: make black-check
      - name: Check style with flake8
        run: flake8 .