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Add file type filters to cubi-tk sodar check-remote and allow optional output suppression #230

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Nicolai-vKuegelgen opened this issue Apr 10, 2024 · 0 comments

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@Nicolai-vKuegelgen
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Is your feature request related to a problem? Please describe.
cubi-tk sodar check-remote can be usefull to (double) check that a given local folder or project is properly archived in a Sodar project. However, there is currently now way to reduce, filter or otherwise control the output that is written into the console.

Describe the solution you'd like
Addition of:

  • filtering by file types (i.e. only check fastq files)
  • suppression of certain output sections (only remote / only local / both)
  • filtering of files by regex/file-glob
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