diff --git a/tests/snappy_pipeline/workflows/test_workflows_homologous_recombination_deficiency.py b/tests/snappy_pipeline/workflows/test_workflows_homologous_recombination_deficiency.py index 024bbd775..22a3214bb 100644 --- a/tests/snappy_pipeline/workflows/test_workflows_homologous_recombination_deficiency.py +++ b/tests/snappy_pipeline/workflows/test_workflows_homologous_recombination_deficiency.py @@ -36,6 +36,7 @@ def minimal_config(): path_index: /path/to/bwa/index.fasta.amb somatic_targeted_seq_cnv_calling: tools: ['sequenza'] + sequenza: {} homologous_recombination_deficiency: tools: ['scarHRD'] path_cnv_calling: ../somatic_targeted_seq_cnv_calling # REQUIRED