From 6993233bc8b50641860d8a4bfc70b21a4ff09076 Mon Sep 17 00:00:00 2001
From: Till Hartmann <till.hartmann@udo.edu>
Date: Wed, 10 Apr 2024 14:14:00 +0200
Subject: [PATCH] fix: explicitly require gawk in mutect2/filter wrapper
 environment (#498)

---
 snappy_wrappers/wrappers/mutect2/environment.yaml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/snappy_wrappers/wrappers/mutect2/environment.yaml b/snappy_wrappers/wrappers/mutect2/environment.yaml
index 0a2ac0693..8b4834863 100644
--- a/snappy_wrappers/wrappers/mutect2/environment.yaml
+++ b/snappy_wrappers/wrappers/mutect2/environment.yaml
@@ -8,6 +8,7 @@ dependencies:
 - htslib >=1.9
 - bcftools >=1.9
 - datrie
+- gawk =5.1
 # snakemake needed by the parallel wrapper
 - snakemake-minimal =7
 # needed by snakemake