From acac695832af919d2b09efb7acfce0ce4517aee3 Mon Sep 17 00:00:00 2001
From: Till Hartmann <till.hartmann@bih-charite.de>
Date: Fri, 26 Apr 2024 16:32:53 +0200
Subject: [PATCH] move region-splitting to its own script, make intermediate
 results temporary

---
 snappy_pipeline/workflows/somatic_variant_calling/Snakefile | 3 ---
 1 file changed, 3 deletions(-)

diff --git a/snappy_pipeline/workflows/somatic_variant_calling/Snakefile b/snappy_pipeline/workflows/somatic_variant_calling/Snakefile
index fd2edd5f..95fbb09b 100644
--- a/snappy_pipeline/workflows/somatic_variant_calling/Snakefile
+++ b/snappy_pipeline/workflows/somatic_variant_calling/Snakefile
@@ -2,14 +2,11 @@
 """CUBI Pipeline somatic_variant_calling step Snakefile"""
 
 import os
-from bisect import bisect
-from itertools import accumulate
 
 from snappy_pipeline import expand_ref
 from snappy_pipeline.workflows.somatic_variant_calling import (
     SomaticVariantCallingWorkflow,
 )
-from snappy_wrappers.tools.genome_windows import matches_any
 
 __author__ = "Manuel Holtgrewe <manuel.holtgrewe@bihealth.de>"