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Merge branch 'main' into 502-somatic-variant-calling-without-normal
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ericblanc20 authored May 6, 2024
2 parents 12fd732 + d7420f7 commit c77311a
Showing 1 changed file with 3 additions and 0 deletions.
Original file line number Diff line number Diff line change
Expand Up @@ -689,6 +689,9 @@ def get_input_files(self, action):

@dictify
def _get_input_files_run(self, wildcards):
name_pattern = "{mapper}.{var_caller}"
if self.config["has_annotation"]:
name_pattern += ".{annotator}"
# VCF file and index
name_pattern = "{mapper}.{var_caller}"
if self.config["has_annotation"]:
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