From db30f80923a996ef2fc3dba36f04b4cd29487e25 Mon Sep 17 00:00:00 2001 From: Manuela Benary Date: Thu, 12 Dec 2024 09:54:43 +0100 Subject: [PATCH] change type of parameters to adhere to specification of EBFilter --- .../workflows/somatic_variant_filtration/model.py | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/snappy_pipeline/workflows/somatic_variant_filtration/model.py b/snappy_pipeline/workflows/somatic_variant_filtration/model.py index 08e808c15..0f48ab35d 100644 --- a/snappy_pipeline/workflows/somatic_variant_filtration/model.py +++ b/snappy_pipeline/workflows/somatic_variant_filtration/model.py @@ -31,16 +31,16 @@ class FilterSets(SnappyModel): class EbfilterSet(SnappyModel): shuffle_seed: int = 1 panel_of_normals_size: int = 25 - min_mapq: float = 20 - min_baseq: float = 15 + min_mapq: int = 20 + min_baseq: int = 15 class Ebfilter(SnappyModel): ebfilter_threshold: float = 2.4 shuffle_seed: int = 1 panel_of_normals_size: int = 25 - min_mapq: float = 20 - min_baseq: float = 15 + min_mapq: int = 20 + min_baseq: int = 15 class Dkfz(SnappyModel):