chore: setting minimal Python version to 3.10 (#484)

.github/workflows/ci.yml

@@ -26,7 +26,7 @@ jobs:
       - name: Install Python
         uses: actions/setup-python@v2
         with:
-          python-version: "3.8"
+          python-version: "3.10"
 
       - name: Install dependencies
         run: |
@@ -58,7 +58,7 @@ jobs:
       - name: Install Python
         uses: actions/setup-python@v2
         with:
-          python-version: "3.8"
+          python-version: "3.10"
 
       - name: Install dependencies
         run: |
@@ -75,10 +75,9 @@ jobs:
     strategy:
       matrix:
         python-version:
-          - "3.8"
-          - "3.9"
           - "3.10"
           # - "3.11"  # no compatible pysam yet
+          # - "3.12"  # no compatible pysam yet
     needs: linting
     steps:
       - name: Install Python via conda

CONTRIBUTING.rst

@@ -103,7 +103,7 @@ Before you submit a pull request, check that it meets these guidelines:
 2. If the pull request adds functionality, the docs should be updated. Put
    your new functionality into a function with a docstring, and add the
    feature to the list in README.rst.
-3. The pull request should work for Python 3.7, 3.8 and 3.9, and for PyPy. Check
+3. The pull request should work for the Python versions from ``setup.py``. Check
    https://travis-ci.org/holtgrewe/cubi_piepline/pull_requests
    and make sure that the tests pass for all supported Python versions.
 

setup.py

@@ -124,9 +124,11 @@ def bash_scripts(names):
         "License :: OSI Approved :: MIT License",
         "Natural Language :: English",
         "Programming Language :: Python :: 3",
-        "Programming Language :: Python :: 3.7",
-        "Programming Language :: Python :: 3.8",
-        "Programming Language :: Python :: 3.9",
+        "Programming Language :: Python :: 3.10",
+        # We are missing bioconda pysam packages for 3.11 and 3.12, cf.
+        # https://github.com/bioconda/bioconda-recipes/issues/37805
+        # "Programming Language :: Python :: 3.11",
+        # "Programming Language :: Python :: 3.12",
     ],
     test_suite="tests",
     tests_require=test_requirements,