use RScript instead of R

bihealth · Dec 13, 2024 · e986d12 · e986d12
1 parent 905231d
commit e986d12
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/snappy_wrappers/snappy_wrapper.py b/snappy_wrappers/snappy_wrapper.py
@@ -163,7 +163,7 @@ def _run_R(self, cmd: str) -> None:
         with open(self._snakemake.log.script, "wt") as f:
             print(cmd, file=f)
         shell(SnappyWrapper.md5_log.format(log=self._snakemake.log.script))
-        self._run(f"R --vanilla < {self._snakemake.log.script}", None)
+        self._run(f"Rscript --vanilla {self._snakemake.log.script}", None)
 
     def run(self, cmd: str) -> None:
         self._run_R(cmd)