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Pull requests: bihealth/snappy-pipeline

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Pull requests list

feat: revamp somatic sv calling purityploidy estimation
#582 opened Dec 13, 2024 by tedil • Draft
1
@ericblanc20
5
chore(main): release 0.3.1 autorelease: pending
#581 opened Dec 12, 2024 by bihealth-bot Loading…
1
chore(deps): update sphinx requirement from <8,>=7.3.7 to >=7.3.7,<9 dependencies Pull requests that update a dependency file
#568 opened Dec 9, 2024 by dependabot bot Loading…
chore(deps): update pytest-cov requirement from <6,>=5.0.0 to >=5.0.0,<7 dependencies Pull requests that update a dependency file
#567 opened Dec 9, 2024 by dependabot bot Loading…
chore(deps): update sphinx-rtd-theme requirement from ~=2.0.0 to ~=3.0.2 dependencies Pull requests that update a dependency file
#561 opened Dec 6, 2024 by dependabot bot Loading…
1
feat: revamp somatic cnv calling
#558 opened Dec 6, 2024 by ericblanc20 Loading…
1
2
chore: Replace mutect2_par wrapper with snakemake scattergather
#538 opened Aug 2, 2024 by tedil • Draft
2
chore: move config accesses in wrappers to params
#536 opened Aug 2, 2024 by tedil • Draft
1
docs: Check & update of configuration defaults (first part)
#532 opened Jul 5, 2024 by ericblanc20 Loading…
1
9
feat: automatically retrieve references/annotations and cache them
#531 opened Jul 5, 2024 by tedil • Draft
2
fix: move config access in gcnv/contig_ploidy wrapper to params
#508 opened Apr 30, 2024 by tedil Loading…
1
1
feat: Adding somatic neoepitope preparation workflow
#495 opened Apr 4, 2024 by giacuong171 Loading…
1
@giacuong171
71
feat!: Update snakemake to v8
#493 opened Mar 25, 2024 by tedil • Draft
4 of 5 tasks
@tedil
6
feat: new DRAGEN import workflow
#459 opened Oct 25, 2023 by xiamaz • Draft
3
feat: Integrate DRAGEN QC into external data import
#424 opened Jul 20, 2023 by xiamaz • Draft
2 tasks
1
2
feat: refurbish ONT germline analysis (#421)
#422 opened Jul 17, 2023 by holtgrewe • Draft
1
2
feat: (#405) somatic variant qc
#407 opened Jun 25, 2023 by giacuong171 Loading…
1
57
Somatic Update
#159 opened Jun 28, 2022 by eudesbarbosa • Draft
1
@ericblanc20
1
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