Fixed issue where 0 counts were calculated on normalized data when th…

…ey should have been calculated on count data (#38) Co-authored-by: Jacob Nearing <[email protected]>
biobakery · Sep 12, 2023 · 550f3d1 · 550f3d1
1 parent 9025ab9
commit 550f3d1
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/R/Maaslin2.R b/R/Maaslin2.R
@@ -950,7 +950,7 @@ Maaslin2 <-
                 fit_data$results,
                 1,
                 FUN = function(x)
-                    length(which(filtered_data_norm[, x[1]] > 0))
+                    length(which(filtered_data[, x[1]] > 0))
             )
 
         ################################