Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Organism and Common Name fields not populating in Geome Connector #102

Open
jdeck88 opened this issue Nov 29, 2018 · 1 comment
Open

Organism and Common Name fields not populating in Geome Connector #102

jdeck88 opened this issue Nov 29, 2018 · 1 comment

Comments

@jdeck88
Copy link
Member

jdeck88 commented Nov 29, 2018

There are Organism and Common Name fields appearing in the following list, which we don't have specifically in the resultset returned from Geome:

image

I think these are necessary for LIMS functions downstream and would like to add them, not sure how to go about this....

@matthew-cheung
Copy link
Collaborator

That's strange, those fields shouldn't appear in the search unless one of the documents has a value for them. I think they aren't meant to show up on tissues but will appear downstream if the taxonomy fields are set right.

Possibly you're seeing them since you've got Workflows and Plates checked.

Those fields are both standard Geneious fields that the LIMS will set based on taxonomy fields. Check usages of DocumentField.ORGANISM_FIELD and DocumentField.COMMON_NAME_FIELD to see how those are populated in the FIMS/LIMS.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants