set sdk earlier #5
Workflow file for this run
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| name: PR (osx-arm64) | |
| on: | |
| push: | |
| branches: | |
| - osx-arm-builds | |
| jobs: | |
| build-osx-arm: | |
| name: OSX-ARM64 Tests | |
| runs-on: macOS-14 # M1 | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| # TODO: bail if there's no osx-arm64 recipes | |
| # - run: | |
| # name: Check for Additional Platforms | |
| # command: ./.circleci/check-for-additional-platforms.sh "origin/master...HEAD" "build_and_test" | |
| - name: set path | |
| run: echo "/opt/mambaforge/bin" >> $GITHUB_PATH | |
| - name: Fetch conda install script | |
| run: | | |
| wget https://raw.githubusercontent.com/bioconda/bioconda-common/master/{install-and-set-up-conda,configure-conda,common}.sh | |
| - name: Restore cache | |
| id: cache | |
| uses: actions/cache@v3 | |
| with: | |
| path: /opt/mambaforge | |
| key: ${{ runner.os }}--bulk--${{ hashFiles('install-and-set-up-conda.sh', 'common.sh', 'configure-conda.sh') }} | |
| - name: Set up bioconda-utils | |
| if: steps.cache.outputs.cache-hit != 'true' | |
| run: bash install-and-set-up-conda.sh | |
| # This script can be used to reconfigure conda to use the right channel setup. | |
| # This has to be done after the cache is restored, because | |
| # the channel setup is not cached as it resides in the home directory. | |
| # We could use a system-wide (and therefore cached) channel setup, | |
| # but mamba does not support that at the time of implementation | |
| # (it ignores settings made with --system). | |
| - name: Configure conda | |
| run: bash configure-conda.sh | |
| - name: Build and Test | |
| env: | |
| # Mimic circleci | |
| OSTYPE: "darwin" | |
| CI: "true" | |
| run: | | |
| set -e | |
| eval "$(conda shell.bash hook)" | |
| conda activate bioconda | |
| # Clean up lingering build artifacts | |
| rm -f /opt/mambaforge/envs/bioconda/conda-bld/osx-arm64/*.tar.bz2 | |
| # The SDK isn't actually cached, so reinstall it | |
| run_conda_forge_build_setup | |
| if [ -z "$GITHUB_BASE_REF" ] ; then | |
| export GITHUB_BASE_REF="master" | |
| fi | |
| git fetch origin "$GITHUB_BASE_REF" | |
| export MACOSX_DEPLOYMENT_TARGET=10.12 | |
| export MACOSX_SDK_VERSION=14.0 | |
| bioconda-utils build recipes config.yml \ | |
| --git-range origin/"$GITHUB_BASE_REF" HEAD | |
| - name: Prepare artifacts | |
| run: | | |
| ( | |
| rm -rf /tmp/artifacts | |
| mkdir -p /tmp/artifacts/packages | |
| cd /opt/mambaforge/envs/bioconda/conda-bld || exit 0 | |
| find -name .cache | xargs rm -rf || true | |
| for n in index.html channeldata.json osx-arm64; do | |
| cp -rv $n /tmp/artifacts/packages || true | |
| done | |
| ) || true | |
| - name: Archive packages | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: osx-arm64-packages | |
| path: | | |
| /tmp/artifacts/packages |