diff --git a/.gitignore b/.gitignore index 7a1a208f..0d8792e5 100644 --- a/.gitignore +++ b/.gitignore @@ -32,3 +32,5 @@ src/main/scala/org/biodatageeks/sequila/pileup/PileupRunner.scala page/resources/_gen/ page/public/ + +data/ diff --git a/build.sbt b/build.sbt index 6e279276..ac5fbf01 100644 --- a/build.sbt +++ b/build.sbt @@ -48,7 +48,7 @@ libraryDependencies += "io.projectglow" %% "glow-spark3" % "1.0.1" excludeAll (E libraryDependencies += "com.intel.gkl" % "gkl" % "0.8.8" libraryDependencies += "org.openjdk.jol" % "jol-core" % "0.16" % "provided" libraryDependencies += "com.github.jsr203hadoop" % "jsr203hadoop" % "1.0.3" - +libraryDependencies += "org.skyscreamer" % "jsonassert" % "1.5.1" diff --git a/gcp_testy b/gcp_testy new file mode 100755 index 00000000..10b96103 --- /dev/null +++ b/gcp_testy @@ -0,0 +1,19 @@ +#!/bin/bash +cores=( "local[1]" "local[2]" "local[4]" "local[8]" "local[16]" ) +results=() + +for i in "${!cores[@]}"; do + for j in 1 2 3 4 5; do + START=$(date +%s.%N) + spark-shell -v --master ${cores[i]} --driver-memory 50g --jars /home/k_kobylinski98/sequila/target/scala-2.12/sequila-assembly-0.1.0.jar --class org.biodatageeks.sequila.apps.XimmerApp -b /home/k_kobylinski98/ximmer_3/data_gs -t /home/k_kobylinski98/ximmer_3/data_gs/big.bed -o /home/k_kobylinski98/ximmer_3/data_gs/ximmer_sequila -f /home/k_kobylinski98/ximmer_3/data/hg38.fasta xhmm conifer exomedepth codex cnmops + END=$(date +%s.%N) + exec_time=$(echo "$END - $START" | bc) + results+=( "$exec_time" ) + echo "$exec_time " >> ./wyniki_xhmm + done +done + +echo "-----------------------------" +for i in "${results[@]}"; do + echo "$i" +done diff --git a/src/main/scala/org/biodatageeks/sequila/apps/SequilaApp.scala b/src/main/scala/org/biodatageeks/sequila/apps/SequilaApp.scala index eb393b26..f7969b43 100644 --- a/src/main/scala/org/biodatageeks/sequila/apps/SequilaApp.scala +++ b/src/main/scala/org/biodatageeks/sequila/apps/SequilaApp.scala @@ -1,6 +1,10 @@ package org.biodatageeks.sequila.apps +import htsjdk.samtools.ValidationStringency import org.apache.spark.sql.{SequilaSession, SparkSession} +import org.biodatageeks.sequila.rangejoins.IntervalTree.IntervalTreeJoinStrategyOptim +import org.biodatageeks.sequila.utils.InternalParams +import org.seqdoop.hadoop_bam.util.SAMHeaderReader trait SequilaApp { def createSequilaSession(): SequilaSession = { @@ -15,4 +19,23 @@ trait SequilaApp { spark.sparkContext.setLogLevel("WARN") ss } + + def createSparkSessionWithExtraStrategy(sparkSave: Boolean = false): SparkSession = { + val spark = SparkSession + .builder() + .config("spark.master", "local[4]") + .config(InternalParams.saveAsSparkFormat, sparkSave) + .getOrCreate() + + spark.sqlContext.setConf(InternalParams.useJoinOrder, "true") + spark.experimental.extraStrategies = new IntervalTreeJoinStrategyOptim(spark) :: Nil + spark + .sparkContext + .setLogLevel("OFF") + spark + .sparkContext + .hadoopConfiguration.set(SAMHeaderReader.VALIDATION_STRINGENCY_PROPERTY, ValidationStringency.SILENT.toString) + + spark + } } diff --git a/src/main/scala/org/biodatageeks/sequila/apps/XimmerDist.scala b/src/main/scala/org/biodatageeks/sequila/apps/XimmerDist.scala new file mode 100644 index 00000000..f3dbd96e --- /dev/null +++ b/src/main/scala/org/biodatageeks/sequila/apps/XimmerDist.scala @@ -0,0 +1,104 @@ +/** + * Created by Krzysztof Kobyliński + */ + +package org.biodatageeks.sequila.apps + +import org.apache.spark.sql.{DataFrame, Row, SequilaSession} +import org.biodatageeks.sequila.apps.PileupApp.createSparkSessionWithExtraStrategy +import org.biodatageeks.sequila.utils.SystemFilesUtil._ +import org.biodatageeks.sequila.ximmer.converters._ +import org.biodatageeks.sequila.ximmer.{PerBaseCoverage, TargetCounts} +import org.rogach.scallop.ScallopConf + +import java.nio.file.{Files, Paths} +import scala.collection.mutable + +object XimmerDist { + + class RunConf(args: Array[String]) extends ScallopConf(args) { + val bam_dir = opt[String](required = true) + val targets = opt[String](required = true) + val fasta = opt[String](required = true) + val output_path = opt[String](required = true) + val spark_save = opt[Boolean](default = Some(false)) + val callers = trailArg[List[String]](required = true) + verify() + } + + def main(args: Array[String]): Unit = { + val runConf = new RunConf(args) + val spark = createSparkSessionWithExtraStrategy(runConf.spark_save()) + val ss = SequilaSession(spark) + + val bamFiles = findBamFiles(runConf.bam_dir()) + + val shouldCallXhmm = runConf.callers().contains("xhmm") + val shouldCallConifer = runConf.callers().contains("conifer") + val shouldCallCodex = runConf.callers().contains("codex") + val shouldCallCnmops = runConf.callers().contains("cnmops") + val shouldCallExomedepth = runConf.callers().contains("exomedepth") + + var targetCounts = mutable.SortedMap[String, (Array[Row], Long)]() + + if (shouldCalculateTargetCounts(runConf)) { + val targetCountsResult = new TargetCounts().calculateTargetCounts(spark, runConf.targets(), bamFiles, shouldCallConifer) + targetCounts = targetCountsResult map {case (sampleName, (dataFrame, readsNr)) => + (sampleName, (dataFrame.collect(), readsNr)) + } + } + + if (shouldCallCodex) { + val codexOutput = runConf.output_path() + "/codex" + Files.createDirectories(Paths.get(codexOutput)) + new CodexConverter().convertToCodexFormat(targetCounts, codexOutput) + } + + if (shouldCallCnmops) { + val cnmopsOutput = runConf.output_path() + "/cnmops" + Files.createDirectories(Paths.get(cnmopsOutput)) + new CnMopsConverter().convertToCnMopsFormat(targetCounts, cnmopsOutput) + } + + if (shouldCallConifer) { + convertToConiferFormat(targetCounts, runConf.output_path()) + } + + if (shouldCallExomedepth) { + val exomedepthOutput = runConf.output_path() + "/exomedepth" + Files.createDirectories(Paths.get(exomedepthOutput)) + new ExomeDepthConverter().convertToExomeDepthFormat(targetCounts, exomedepthOutput) + } + + if (shouldCallXhmm) { + val perBaseResults = new PerBaseCoverage().calculatePerBaseCoverage(ss, bamFiles, runConf.targets(), runConf.fasta()) + convertToXhmmFormat(runConf.output_path(), perBaseResults) + } + } + + private def shouldCalculateTargetCounts(runConf: RunConf): Boolean = { + val callers = List("cnmops", "exomedepth", "conifer", "codex") + runConf.callers().exists(callers.contains) + } + + private def convertToXhmmFormat(outputPath: String, perBaseResult: mutable.Map[String, (DataFrame, DataFrame)]) : Unit = { + val xhmmOutput = outputPath + "/xhmm" + Files.createDirectories(Paths.get(xhmmOutput)) + val converter = new GngsConverter() + + perBaseResult.foreach(pair => + converter.calculateStatsAndConvertToGngsFormat(xhmmOutput, pair._1, pair._2._1, pair._2._2) + ) + } + + private def convertToConiferFormat(targetCountResult: mutable.Map[String, (Array[Row], Long)], outputPath: String) : Unit = { + val coniferOutput = outputPath + "/conifer" + Files.createDirectories(Paths.get(coniferOutput)) + val converter = new ConiferConverter() + + for (sampleResult <- targetCountResult) { + converter.convertToConiferFormat(sampleResult, coniferOutput) + } + } + +} diff --git a/src/main/scala/org/biodatageeks/sequila/datasources/BAM/AlignmentRelation.scala b/src/main/scala/org/biodatageeks/sequila/datasources/BAM/AlignmentRelation.scala index 9285a9a9..71132a1f 100644 --- a/src/main/scala/org/biodatageeks/sequila/datasources/BAM/AlignmentRelation.scala +++ b/src/main/scala/org/biodatageeks/sequila/datasources/BAM/AlignmentRelation.scala @@ -242,7 +242,7 @@ trait BDGAlignFileReaderWriter [T <: BDGAlignInputFormat]{ case Columns.POS => r.getStart case Columns.RNEXT => DataQualityFuncs.cleanContig(r.getMateReferenceName) //FIXME: to check if the mapping is correct case Columns.PNEXT => r.getMateAlignmentStart //FIXME: to check if the mapping is correct - case Columns.TLEN => r.getLengthOnReference //FIXME: to check if the mapping is correct + case Columns.TLEN => r.getInferredInsertSize case s if s.startsWith("tag_") => { val fields = ScalaFuncs.classAccessors[Alignment] val tagField = fields.filter(_.name.toString == s).head diff --git a/src/main/scala/org/biodatageeks/sequila/pileup/PileupMethods.scala b/src/main/scala/org/biodatageeks/sequila/pileup/PileupMethods.scala index 8bb736c7..60c2a4bb 100644 --- a/src/main/scala/org/biodatageeks/sequila/pileup/PileupMethods.scala +++ b/src/main/scala/org/biodatageeks/sequila/pileup/PileupMethods.scala @@ -46,12 +46,12 @@ object PileupMethods { val result = if (conf.value.coverageOnly && conf.value.useVectorizedOrcWriter) { aggregates - .toCoverageVectorizedWriter(bounds, output, conf) + .toCoverageVectorizedWriter(refPath, bounds, output, conf) .count() spark.sparkContext.emptyRDD[InternalRow] } else if (conf.value.coverageOnly){ - aggregates.toCoverage(bounds) + aggregates.toCoverage(refPath,bounds) } else if(conf.value.useVectorizedOrcWriter) { aggregates.toPileupVectorizedWriter(refPath, bounds, output, conf) diff --git a/src/main/scala/org/biodatageeks/sequila/pileup/converters/sequila/SequilaConverter.scala b/src/main/scala/org/biodatageeks/sequila/pileup/converters/sequila/SequilaConverter.scala index 20432eff..422a4fb4 100644 --- a/src/main/scala/org/biodatageeks/sequila/pileup/converters/sequila/SequilaConverter.scala +++ b/src/main/scala/org/biodatageeks/sequila/pileup/converters/sequila/SequilaConverter.scala @@ -51,4 +51,30 @@ class SequilaConverter (spark: SparkSession) extends Serializable with PileupCon spark.createDF(perBase.collect().toList, CommonPileupFormat.schemaAltsQualsString.fields.toList ) } + def convertToPerBaseOutput(df: DataFrame): DataFrame = { + val perBase = df.rdd.flatMap( { r => { + val chr = r.getString(SequilaSchema.contig) + val start = r.getInt(SequilaSchema.position_start) + val end = r.getInt(SequilaSchema.position_end) + 1 + val ref = r.getString(SequilaSchema.ref) + val cov = r.getShort(SequilaSchema.cov) + val array = new Array[(String, Int, Int, String, Short)](end - start) + + var cnt = 0 + var position = start + + while (position < end) { + if (ref == AlignmentConstants.REF_SYMBOL) + array(cnt) = (chr, position, position, "R", cov) + else + array(cnt) = (chr, position, position, ref.substring(cnt, cnt + 1), cov) + cnt += 1 + position += 1 + } + array + } + }) + spark.createDataFrame(perBase) + } + } diff --git a/src/main/scala/org/biodatageeks/sequila/pileup/model/ContigAggregateRDD.scala b/src/main/scala/org/biodatageeks/sequila/pileup/model/ContigAggregateRDD.scala index 1471d527..91265355 100644 --- a/src/main/scala/org/biodatageeks/sequila/pileup/model/ContigAggregateRDD.scala +++ b/src/main/scala/org/biodatageeks/sequila/pileup/model/ContigAggregateRDD.scala @@ -180,14 +180,14 @@ case class AggregateRDD(rdd: RDD[ContigAggregate]) { } } - def toCoverage(bounds: Broadcast[Array[PartitionBounds]] ) : RDD[InternalRow] = { + def toCoverage(refPath: String, bounds: Broadcast[Array[PartitionBounds]] ) : RDD[InternalRow] = { this.rdd.mapPartitionsWithIndex { (index, part) => part.map { agg => { - val contigMap = new mutable.HashMap[String, Array[Byte]]() - contigMap += (agg.contig -> UTF8String.fromString(agg.contig).getBytes) - PileupProjection.contigByteMap=contigMap + val reference = new Reference(refPath) + val contigMap = reference.getNormalizedContigMap + PileupProjection.setContigMap(contigMap) var cov, ind, i, currPos = 0 val allPos = false @@ -232,15 +232,15 @@ case class AggregateRDD(rdd: RDD[ContigAggregate]) { } - def toCoverageVectorizedWriter(bounds: Broadcast[Array[PartitionBounds]], output: Seq[Attribute], conf: Broadcast[Conf]) : RDD[Int] = { + def toCoverageVectorizedWriter(refPath: String, bounds: Broadcast[Array[PartitionBounds]], output: Seq[Attribute], conf: Broadcast[Conf]) : RDD[Int] = { logger.info(s"### Coverage: using Vectorized ORC output optimization with ${conf.value.orcCompressCodec} compression") this.rdd.mapPartitionsWithIndex { (index, part) => part.map { agg => { - val contigMap = new mutable.HashMap[String, Array[Byte]]() - contigMap += (agg.contig -> UTF8String.fromString(agg.contig).getBytes) - PileupProjection.contigByteMap=contigMap + val reference = new Reference(refPath) + val contigMap = reference.getNormalizedContigMap + PileupProjection.setContigMap(contigMap) var cov, ind, i, currPos = 0 val maxIndex = FastMath.findMaxIndex(agg.events) diff --git a/src/main/scala/org/biodatageeks/sequila/utils/InternalParams.scala b/src/main/scala/org/biodatageeks/sequila/utils/InternalParams.scala index 07f54f1d..db08e07a 100644 --- a/src/main/scala/org/biodatageeks/sequila/utils/InternalParams.scala +++ b/src/main/scala/org/biodatageeks/sequila/utils/InternalParams.scala @@ -55,6 +55,6 @@ object InternalParams { final val minOverlap = "spark.biodatageeks.rangejoin.minOverlap" final val intervalHolderClass = "spark.biodatageeks.rangejoin.intervalHolderClass" - + final val saveAsSparkFormat = "spark.biodatageeks.saveAsSparkFormat" } diff --git a/src/main/scala/org/biodatageeks/sequila/utils/SystemFilesUtil.scala b/src/main/scala/org/biodatageeks/sequila/utils/SystemFilesUtil.scala new file mode 100644 index 00000000..39d7df37 --- /dev/null +++ b/src/main/scala/org/biodatageeks/sequila/utils/SystemFilesUtil.scala @@ -0,0 +1,35 @@ +/** + * Created by Krzysztof Kobyliński + */ + +package org.biodatageeks.sequila.utils + +import java.io.File + +object SystemFilesUtil { + + def findBamFiles(dirPath: String) : List[String] = { + val dir = new File(dirPath) + if (!dir.exists() || !dir.isDirectory) { + throw new IllegalArgumentException("Directory path should be provided") + } + + dir.listFiles + .filter(_.isFile) + .filter(_.getName.endsWith(".bam")) + .map(_.getPath) + .map(x => x.replace("\\", "/")) + .toList + .sorted + } + + def getFilename(filePath: String) : String = { + val file = new File(filePath) + if (!file.exists() || file.isDirectory) { + throw new IllegalArgumentException("Filepath should be provided") + } + + file.getName.split('.')(0) + } + +} diff --git a/src/main/scala/org/biodatageeks/sequila/ximmer/PerBaseCoverage.scala b/src/main/scala/org/biodatageeks/sequila/ximmer/PerBaseCoverage.scala new file mode 100644 index 00000000..d78e952b --- /dev/null +++ b/src/main/scala/org/biodatageeks/sequila/ximmer/PerBaseCoverage.scala @@ -0,0 +1,107 @@ +/** + * Created by Krzysztof Kobyliński + */ +package org.biodatageeks.sequila.ximmer + +import org.apache.spark.sql.{DataFrame, SparkSession} +import org.biodatageeks.sequila.pileup.converters.sequila.SequilaConverter +import org.biodatageeks.sequila.utils.InternalParams +import org.biodatageeks.sequila.utils.SystemFilesUtil.getFilename + +import scala.collection.mutable + +class PerBaseCoverage { + + def calculatePerBaseCoverage(ss: SparkSession, bamFiles: List[String], targetsPath: String, fastaPath: String) + : mutable.Map[String, (DataFrame, DataFrame)] = { + ss.sqlContext.setConf(InternalParams.filterReadsByFlag, "2316") + ss.sqlContext.setConf(InternalParams.filterReadsByMQ, "1") + + ss + .read + .option("header", "false") + .option("delimiter", "\t") + .csv(targetsPath) + .createOrReplaceTempView("targets") + + val resultMap = mutable.SortedMap[String, (DataFrame, DataFrame)]() + + for (bam <- bamFiles) { + ss.sql(s"""DROP TABLE IF EXISTS reads""") + ss.sql( + s"""CREATE TABLE reads + |USING org.biodatageeks.sequila.datasources.BAM.BAMDataSource + |OPTIONS(path '$bam')""".stripMargin) + + val sample = getFilename(bam) + + val coverageQuery = + s""" + |SELECT * + |FROM coverage('reads', '${sample}', '${fastaPath}') + """.stripMargin + + val coverageDf = ss.sql(coverageQuery) + val perBaseCoverage = new SequilaConverter(ss).convertToPerBaseOutput(coverageDf) + perBaseCoverage.createOrReplaceTempView("reads_pb_cov") + + val intervalQuery = + """SELECT r.*, t._c0 as chr , t._c1 as start, t._c2 as end + |FROM reads_pb_cov r INNER JOIN targets t + |ON ( + | t._c0 = concat('chr', r._1) + | AND + | r._2 >= CAST(t._c1 AS INTEGER) + | AND + | r._2 <= CAST(t._c2 AS INTEGER) - 2 + |) + |Where r._1 is not null and + | CAST(t._c1 AS INTEGER) < CAST(t._c2 AS INTEGER) - 2 + """.stripMargin + + val narrowPerBaseCoverage = ss.sql(intervalQuery) + narrowPerBaseCoverage.createOrReplaceTempView("narrow_reads_pb_cov") + + val meanCoverageQuery = + """SELECT chr, start, end, + |sum(r._5) / (CAST(end AS INTEGER) - CAST(start AS INTEGER) - 1) AS mean_cov + |FROM narrow_reads_pb_cov r + |GROUP BY chr, start, end + |""".stripMargin + + val meanCoverage = ss.sql(meanCoverageQuery) + meanCoverage.createOrReplaceTempView("mean_coverage") + + val includeAllTargetsQuery = + """SELECT t._c0 AS Chr, + | t._c1 AS Start, + | t._c2 AS End, + | CASE WHEN mean_cov IS NULL THEN 0 ELSE mean_cov END + |FROM targets t + | LEFT JOIN mean_coverage r on r.chr = t._c0 AND r.start = t._c1 AND r.end = t._c2 + |ORDER BY chr, CAST(start AS INTEGER) + |""".stripMargin + + val allMeanCoverage = ss.sql(includeAllTargetsQuery) + + val statsQuery = + """ + |Select percentile_approx(r._5, 0.5) as Median, + | avg(r._5) as Mean, + | Count(*) as reads_nr, + | SUM(CASE WHEN r._5 > 1 THEN 1 ELSE 0 END) AS above_1, + | SUM(CASE WHEN r._5 > 5 THEN 1 ELSE 0 END) AS above_5, + | SUM(CASE WHEN r._5 > 10 THEN 1 ELSE 0 END) AS above_10, + | SUM(CASE WHEN r._5 > 20 THEN 1 ELSE 0 END) AS above_20, + | SUM(CASE WHEN r._5 > 50 THEN 1 ELSE 0 END) AS above_50 + |FROM narrow_reads_pb_cov r + |""".stripMargin + + val stats = ss.sql(statsQuery) + + resultMap += (sample -> (allMeanCoverage, stats)) + } + + return resultMap + } +} diff --git a/src/main/scala/org/biodatageeks/sequila/ximmer/TargetCounts.scala b/src/main/scala/org/biodatageeks/sequila/ximmer/TargetCounts.scala new file mode 100644 index 00000000..9c9343a4 --- /dev/null +++ b/src/main/scala/org/biodatageeks/sequila/ximmer/TargetCounts.scala @@ -0,0 +1,104 @@ +/** + * Created by Krzysztof Kobyliński + */ +package org.biodatageeks.sequila.ximmer + +import org.apache.spark.sql.{DataFrame, SparkSession} +import org.biodatageeks.sequila.utils.SystemFilesUtil._ + +import scala.collection.mutable + +class TargetCounts { + + def calculateTargetCounts(ss: SparkSession, targetsPath: String, bamFiles: List[String], saveBamInfo: Boolean): mutable.SortedMap[String, (DataFrame, Long)] = { + val resultMap = mutable.SortedMap[String, (DataFrame, Long)]() + + ss + .read + .option("header", "false") + .option("delimiter", "\t") + .csv(targetsPath) + .createOrReplaceTempView("targets") + + for (bam <- bamFiles) { + ss.sql(s"""DROP TABLE IF EXISTS reads""") + ss.sql( + s"""CREATE TABLE reads + |USING org.biodatageeks.sequila.datasources.BAM.BAMDataSource + |OPTIONS(path '$bam')""".stripMargin) + + val sample = getFilename(bam) + + val intervalJoinQuery = + """SELECT t._c0 AS Chr, + | t._c1 AS Start, + | t._c2 AS End, + | SUM(CASE WHEN + | r.flag & 1604 == 64 AND --!read unmapped and first in pair and !read fails and !read duplicate + | r.mapq > 20 AND + | r.pos_end >= CAST(t._c1 AS INTEGER) THEN 1 ELSE 0 END + | ) AS codex_cov, + | SUM(CASE WHEN + | r.mapq > 1 AND + | r.pos_start >= CAST(t._c1 AS INTEGER) AND + | r.pos_start < CAST(t._c2 AS INTEGER) THEN 1 ELSE 0 END + | ) AS cnmops_cov, + | SUM(CASE WHEN + | r.flag & 1295 == 3 AND -- read paired and mapped in proper pair and !unmapped and !mate unmapped and !secondary alignment and !duplicate + | r.mapq > 20 AND + | r.pos_start + r.tlen > CAST(t._c1 AS INTEGER) AND + | r.pos_start < CAST(t._c2 AS INTEGER) THEN 1 ELSE 0 END + | ) AS ed_cov, + | SUM(CASE WHEN + | r.pos_start >= CAST(t._c1 AS INTEGER) THEN 1 ELSE 0 END + | ) AS conifer_cov + |FROM reads r INNER JOIN targets t + |ON ( + | t._c0 = concat('chr', r.contig) + | AND + | r.pos_start <= CAST(t._c2 AS INTEGER) + | AND + | r.pos_end + r.tlen >= CAST(t._c1 AS INTEGER) --Warunek dodatkowy zeby ograniczyc ilosc rekordow w joinie + |) + |WHERE r.contig is not null + | AND r.pos_start < r.pos_end + |GROUP BY t._c0, t._c1, t._c2 + |""".stripMargin + + ss.sql(intervalJoinQuery) + .createOrReplaceTempView("result"); + + val includeAllTargetsQuery = + """SELECT t._c0 AS Chr, + | t._c1 AS Start, + | t._c2 AS End, + | CASE WHEN codex_cov IS NULL THEN 0 ELSE codex_cov END AS codex_cov, + | CASE WHEN cnmops_cov IS NULL THEN 0 ELSE cnmops_cov END AS cnmops_cov, + | CASE WHEN ed_cov IS NULL THEN 0 ELSE ed_cov END AS ed_cov, + | CASE WHEN conifer_cov IS NULL THEN 0 ELSE conifer_cov END AS conifer_cov + |FROM targets t + | LEFT JOIN result r on r.chr = t._c0 AND r.start = t._c1 AND r.end = t._c2 + |ORDER BY chr, CAST(start AS INTEGER) + |""".stripMargin + + val resultDF = ss.sql(includeAllTargetsQuery).cache() + resultDF.createOrReplaceTempView("result_all_targets") + + var readsNr = 0L + if (saveBamInfo) { + val startTime = System.currentTimeMillis() + val countQuery = "Select sum(conifer_cov) from result_all_targets" + readsNr = ss.sql(countQuery) + .first() + .getLong(0) + val endTimeEnd = System.currentTimeMillis() + + println("Select count time: " + (endTimeEnd - startTime) / 1000) + } + + resultMap += (sample -> (resultDF, readsNr)) + } + return resultMap + } + +} diff --git a/src/main/scala/org/biodatageeks/sequila/ximmer/converters/CnMopsConverter.scala b/src/main/scala/org/biodatageeks/sequila/ximmer/converters/CnMopsConverter.scala new file mode 100644 index 00000000..94e5b2ef --- /dev/null +++ b/src/main/scala/org/biodatageeks/sequila/ximmer/converters/CnMopsConverter.scala @@ -0,0 +1,338 @@ +/** + * Created by Krzysztof Kobyliński + */ + +package org.biodatageeks.sequila.ximmer.converters + +import org.apache.spark.sql.{Row, SparkSession} +import org.biodatageeks.sequila.utils.InternalParams + +import java.io.{File, PrintWriter} +import scala.collection.mutable +import scala.collection.mutable.ListBuffer + +class CnMopsConverter { + + val targetsNumberByChr: mutable.Map[String, Int] = mutable.SortedMap[String, Int]() + val targetStartList: ListBuffer[String] = ListBuffer[String]() + val targetLengthList: ListBuffer[Int] = ListBuffer[Int]() + var targetsNr = 0 + + def convertToCnMopsFormat(targetCountResult: mutable.Map[String, (Array[Row], Long)], outputPath: String): Unit = { + val spark = SparkSession.builder().getOrCreate() + val sampleNames = targetCountResult.keys.toList + val samplesValues: ListBuffer[List[String]] = ListBuffer[List[String]]() + var sampleDFList = targetCountResult.map(x => x._2._1).toList + + val firstSampleValues = fillTargetsInfo(sampleDFList.head) + samplesValues += firstSampleValues + sampleDFList = sampleDFList.drop(1) + + for (sampleDF <- sampleDFList) { + val sampleValue = fillValuesForSample(sampleDF) + samplesValues += sampleValue + } + + val chrList = targetsNumberByChr.keys.toList + val chrNr = chrList.size + val targetsForEachChromosome = targetsNumberByChr.values.toList + + val singleSampleCoveragesList = samplesValues + .map(x => { + val values = addSquareBrackets(x.mkString(", ")) + singleSampleCoverages.format(values) + }) + .toList + + this.chromosomeList = addSquareBrackets(addExtraQuotesAndJoinToString(chrList)) + this.chrIterators = addSquareBrackets(Range.inclusive(1, chrNr).toList.mkString(", ")) + this.sampleNames = addSquareBrackets(addExtraQuotesAndJoinToString(sampleNames)) + this.naXChrSize = addSquareBrackets(addExtraQuotesAndJoinToString(List.fill(chrNr)("NA"))) + this.nullXChrSize = addSquareBrackets(List.fill(chrNr)(null).mkString(", ")) + this.targetsNumberAll = addSquareBrackets(targetsNr.toString) + this.rangeStartList = addSquareBrackets(targetStartList.toList.mkString(", ")) + this.rangeWidthList = addSquareBrackets(targetLengthList.toList.mkString(", ")) + this.targetsNumberPerChr = addSquareBrackets(targetsForEachChromosome.mkString(", ")) + this.sampleCoverageList = addSquareBrackets(singleSampleCoveragesList.mkString(", ")) + + val fileName = "analysis.cnmops.cnvs.json" + val output = outputPath + "/" + fileName + val formattedJson = writeResultJson(output) + if (spark.conf.get(InternalParams.saveAsSparkFormat).toBoolean) { + import spark.implicits._ + val resultDF = spark.sparkContext.parallelize(Seq(formattedJson)).toDF() + resultDF.write.text(outputPath + "/spark") + } + } + + private def fillValuesForSample(sampleDF: Array[Row]): List[String] = { + sampleDF.map(row => { + row.getLong(4).toString + }).toList + } + + private def fillTargetsInfo(df: Array[Row]): List[String] = { + df.map(row => { + val chr = row.getString(0) + val start = row.getString(1) + val end = row.getString(2) + + if (!targetsNumberByChr.contains(chr)) { + targetsNumberByChr += (chr -> 0) + } + targetsNumberByChr(chr) += 1 + + targetStartList += start + targetLengthList += (end.toInt - start.toInt) + + targetsNr += 1 + + row.getLong(4).toString + }).toList + } + + private def addSquareBrackets(s: String): String = { + "[" + s + "]" + } + + private def addExtraQuotesAndJoinToString(l: List[String]): String = { + val listWithExtraQuotes = l.toStream + .map(x => addExtraQuotes(x)) + .toList + listWithExtraQuotes.mkString(", ") + } + + private def addExtraQuotes(s: String): String = { + "\"" + s + "\"" + } + + val singleSampleCoverages: String = + s"""{ + | "type": "integer", + | "attributes": {}, + | "value": %s + |} + |""".stripMargin + + var chromosomeList: String = "" + var chrIterators: String = "" + var targetsNumberPerChr: String = "" + var rangeStartList: String = "" + var rangeWidthList: String = "" + var naXChrSize: String = "" + var nullXChrSize: String = "" + var sampleNames: String = "" + var sampleCoverageList: String = "" + var targetsNumberAll: String = "" + + private def writeResultJson(outputPath: String): String = { + val fileObject = new File(outputPath) + val pw = new PrintWriter(fileObject) + + val formattedJson: String = + f"""{ + | "type": "S4", + | "attributes": { + | "seqnames": { + | "type": "S4", + | "attributes": { + | "values": { + | "type": "integer", + | "attributes": { + | "levels": { + | "type": "character", + | "attributes": {}, + | "value": $chromosomeList + | }, + | "class": { + | "type": "character", + | "attributes": {}, + | "value": ["factor"] + | } + | }, + | "value": $chrIterators + | }, + | "lengths": { + | "type": "integer", + | "attributes": {}, + | "value": $targetsNumberPerChr + | }, + | "elementMetadata": { + | "type": "NULL" + | }, + | "metadata": { + | "type": "list", + | "attributes": {}, + | "value": [] + | } + | }, + | "value": { + | "class": "Rle", + | "package": "S4Vectors" + | } + | }, + | "ranges": { + | "type": "S4", + | "attributes": { + | "start": { + | "type": "integer", + | "attributes": {}, + | "value": $rangeStartList + | }, + | "width": { + | "type": "integer", + | "attributes": {}, + | "value": $rangeWidthList + | }, + | "NAMES": { + | "type": "NULL" + | }, + | "elementType": { + | "type": "character", + | "attributes": {}, + | "value": ["ANY"] + | }, + | "elementMetadata": { + | "type": "NULL" + | }, + | "metadata": { + | "type": "list", + | "attributes": {}, + | "value": [] + | } + | }, + | "value": { + | "class": "IRanges", + | "package": "IRanges" + | } + | }, + | "strand": { + | "type": "S4", + | "attributes": { + | "values": { + | "type": "integer", + | "attributes": { + | "levels": { + | "type": "character", + | "attributes": {}, + | "value": ["+", "-", "*"] + | }, + | "class": { + | "type": "character", + | "attributes": {}, + | "value": ["factor"] + | } + | }, + | "value": [3] + | }, + | "lengths": { + | "type": "integer", + | "attributes": {}, + | "value": $targetsNumberAll + | }, + | "elementMetadata": { + | "type": "NULL" + | }, + | "metadata": { + | "type": "list", + | "attributes": {}, + | "value": [] + | } + | }, + | "value": { + | "class": "Rle", + | "package": "S4Vectors" + | } + | }, + | "seqinfo": { + | "type": "S4", + | "attributes": { + | "seqnames": { + | "type": "character", + | "attributes": {}, + | "value": $chromosomeList + | }, + | "seqlengths": { + | "type": "integer", + | "attributes": {}, + | "value": $naXChrSize + | }, + | "is_circular": { + | "type": "logical", + | "attributes": {}, + | "value": $nullXChrSize + | }, + | "genome": { + | "type": "character", + | "attributes": {}, + | "value": $nullXChrSize + | } + | }, + | "value": { + | "class": "Seqinfo", + | "package": "GenomeInfoDb" + | } + | }, + | "elementMetadata": { + | "type": "S4", + | "attributes": { + | "rownames": { + | "type": "NULL" + | }, + | "nrows": { + | "type": "integer", + | "attributes": {}, + | "value": $targetsNumberAll + | }, + | "listData": { + | "type": "list", + | "attributes": { + | "names": { + | "type": "character", + | "attributes": {}, + | "value": $sampleNames + | } + | }, + | "value": $sampleCoverageList + | }, + | "elementType": { + | "type": "character", + | "attributes": {}, + | "value": ["ANY"] + | }, + | "elementMetadata": { + | "type": "NULL" + | }, + | "metadata": { + | "type": "list", + | "attributes": {}, + | "value": [] + | } + | }, + | "value": { + | "class": "DFrame", + | "package": "S4Vectors" + | } + | }, + | "elementType": { + | "type": "character", + | "attributes": {}, + | "value": ["ANY"] + | }, + | "metadata": { + | "type": "list", + | "attributes": {}, + | "value": [] + | } + | }, + | "value": { + | "class": "GRanges", + | "package": "GenomicRanges" + | } + |}""".stripMargin + + pw.write(formattedJson) + pw.close() + formattedJson + } +} diff --git a/src/main/scala/org/biodatageeks/sequila/ximmer/converters/CodexConverter.scala b/src/main/scala/org/biodatageeks/sequila/ximmer/converters/CodexConverter.scala new file mode 100644 index 00000000..1952f7d8 --- /dev/null +++ b/src/main/scala/org/biodatageeks/sequila/ximmer/converters/CodexConverter.scala @@ -0,0 +1,71 @@ +/** + * Created by Krzysztof Kobyliński + */ + +package org.biodatageeks.sequila.ximmer.converters + +import org.apache.spark.sql.{Row, SparkSession} +import org.biodatageeks.sequila.utils.InternalParams + +import java.io.{File, PrintWriter} +import scala.collection.mutable +import scala.collection.mutable.ListBuffer + +class CodexConverter { + val mergedFormatJson: String = + s"""{ + | "type": "integer", + | "attributes": { + | "dim": { + | "type": "integer", + | "attributes": {}, + | "value": [%s, %s] + | } + | }, + | "value": %s + |}""".stripMargin + + var coveragesByChrMap: mutable.Map[String, ListBuffer[Int]] = mutable.SortedMap[String, ListBuffer[Int]]() + + def convertToCodexFormat(targetCountResult: mutable.Map[String, (Array[Row], Long)], outputPath: String): Unit = { + val spark = SparkSession.builder().getOrCreate() + val samplesCount = targetCountResult.size + + for (targetCountResult <- targetCountResult) { + readAndFillCoveragesByChrMap(targetCountResult._2._1) + } + + for ((chr, values) <- coveragesByChrMap) { + val fileName = "analysis.codex_coverage." + chr + ".json" + val fileObject = new File(outputPath + "/" + fileName) + val pw = new PrintWriter(fileObject) + + val stringValue = mergedFormatJson.format( + values.size / samplesCount, + samplesCount, + "[" + values.toList.mkString(", ") + "]" + ) + + pw.write(stringValue) + pw.close() + + if (spark.conf.get(InternalParams.saveAsSparkFormat).toBoolean) { + import spark.implicits._ + val resultDF = spark.sparkContext.parallelize(Seq(stringValue)).toDF() + resultDF.write.text(outputPath + "/spark" + chr) + } + } + } + + private def readAndFillCoveragesByChrMap(targetCount: Array[Row]): Unit = { + targetCount.foreach(row => { + val chr = row.getString(0) + val cov = row.getLong(3).toInt + if (!coveragesByChrMap.contains(chr)) { + coveragesByChrMap += (chr -> new ListBuffer[Int]) + } + coveragesByChrMap(chr) += cov + }) + } + +} diff --git a/src/main/scala/org/biodatageeks/sequila/ximmer/converters/ConiferConverter.scala b/src/main/scala/org/biodatageeks/sequila/ximmer/converters/ConiferConverter.scala new file mode 100644 index 00000000..a8a1234e --- /dev/null +++ b/src/main/scala/org/biodatageeks/sequila/ximmer/converters/ConiferConverter.scala @@ -0,0 +1,50 @@ +/** + * Created by Krzysztof Kobyliński + */ +package org.biodatageeks.sequila.ximmer.converters + +import org.apache.spark.sql.{Row, SparkSession} +import org.biodatageeks.sequila.utils.InternalParams + +import java.io.{File, PrintWriter} +import scala.collection.mutable.ListBuffer + +class ConiferConverter { + + def convertToConiferFormat(targetCountResult: (String, (Array[Row], Long)), outputPath: String) : Unit = { + val spark = SparkSession.builder().getOrCreate() + val sample = targetCountResult._1 + val readsNumber = targetCountResult._2._2 + val filename = outputPath + "/" + sample + ".rpkm" + val fileObject = new File(filename) + val pw = new PrintWriter(fileObject) + var iterator = 1 + + val resultList = ListBuffer[String]() + targetCountResult._2._1.foreach(row => { + val targetStart = row.getString(1).toInt + val targetEnd = row.getString(2).toInt + val cov = row.getLong(6) + val exonLength = targetEnd - targetStart + val rpkm = BigDecimal(calculateRpkm(cov, exonLength, readsNumber)).setScale(6, BigDecimal.RoundingMode.FLOOR).toDouble + val line = iterator + "\t" + cov + "\t" + rpkm + pw.write(line + "\n") + resultList += line + iterator += 1 + }) + + pw.close() + + if (spark.conf.get(InternalParams.saveAsSparkFormat).toBoolean) { + import spark.implicits._ + val resultDF = spark.sparkContext.parallelize(resultList).toDF() + resultDF.write + .option("delimiter", "\t") + .csv(outputPath + "/spark" + "/" + sample) + } + } + + private def calculateRpkm(readCount: Long, exonLength: Int, totalReads: Long) : Double = { + (scala.math.pow(10, 9) * readCount / exonLength) / totalReads + } +} diff --git a/src/main/scala/org/biodatageeks/sequila/ximmer/converters/ExomeDepthConverter.scala b/src/main/scala/org/biodatageeks/sequila/ximmer/converters/ExomeDepthConverter.scala new file mode 100644 index 00000000..5df82ddc --- /dev/null +++ b/src/main/scala/org/biodatageeks/sequila/ximmer/converters/ExomeDepthConverter.scala @@ -0,0 +1,100 @@ +/** + * Created by Krzysztof Kobyliński + */ +package org.biodatageeks.sequila.ximmer.converters + +import org.apache.spark.sql.{Row, SparkSession} +import org.biodatageeks.sequila.utils.InternalParams + +import java.io.{File, PrintWriter} +import scala.collection.mutable +import scala.collection.mutable.ListBuffer + +class ExomeDepthConverter { + + val recordsByChr: mutable.Map[String, ListBuffer[ListBuffer[String]]] = mutable.SortedMap[String, ListBuffer[ListBuffer[String]]]() + + def convertToExomeDepthFormat(targetCountResult: mutable.Map[String, (Array[Row], Long)], outputPath: String): Unit = { + val spark = SparkSession.builder().getOrCreate() + val sampleNames = targetCountResult.keys.toList + val header = List(addExtraQuotes("chromosome"), addExtraQuotes("start"), addExtraQuotes("end"), addExtraQuotes("exon")) + .mkString(" ") + " " + + sampleNames.toStream + .map(x => addExtraQuotes(x)) + .toList + .mkString(" ") + + val sampleList = targetCountResult.map(x => x._2._1).toList + var beforeInit = true + for (sampleDF <- sampleList) { + if (beforeInit) { + initTargets(sampleDF) + beforeInit = false + } + + fillCoveragesForSample(sampleDF) + } + + recordsByChr.foreach(x => { + val chr = x._1 + val regions = x._2 + val resultList = ListBuffer[String]() + val fileName = "analysis." + chr + ".counts.tsv" + val fileObject = new File(outputPath + "/" + fileName) + val pw = new PrintWriter(fileObject) + resultList += header + pw.write(header) + pw.write("\n") + + regions.foreach(r => { + resultList += r.mkString(" ") + pw.write(r.mkString(" ")) + pw.write("\n") + }) + pw.close() + + if (spark.conf.get(InternalParams.saveAsSparkFormat).toBoolean) { + import spark.implicits._ + val resultDF = spark.sparkContext.parallelize(resultList).toDF() + resultDF.write + .option("delimiter", "\t") + .csv(outputPath + "/spark" + chr) + } + }) + } + + private def addExtraQuotes(s: String): String = { + "\"" + s + "\"" + } + + private def initTargets(rows: Array[Row]): Unit = { + rows.foreach(row => { + val chr = row.getString(0) + val start = row.getString(1).toInt + val end = row.getString(2).toInt - 1 + val exon = "\"" + chr + "-" + start + "-" + end + "\"" + val record = ListBuffer(addExtraQuotes(chr), (start + 1).toString, end.toString, exon) + if (!recordsByChr.contains(chr)) { + recordsByChr += (chr -> new ListBuffer[ListBuffer[String]]) + } + recordsByChr(chr) += record + }) + } + + private def fillCoveragesForSample(rows: Array[Row]): Unit = { + val chrList = recordsByChr.keys.toList + val iteratorByChr = mutable.LinkedHashMap[String, Int]() + for (chr <- chrList) { + iteratorByChr += (chr -> 0) + } + + rows.foreach(row => { + val chr = row.getString(0) + val cov = row.getLong(5) + val iterator = iteratorByChr(chr) + recordsByChr(chr)(iterator) += cov.toString + iteratorByChr(chr) += 1 + }) + } + +} diff --git a/src/main/scala/org/biodatageeks/sequila/ximmer/converters/GngsConverter.scala b/src/main/scala/org/biodatageeks/sequila/ximmer/converters/GngsConverter.scala new file mode 100644 index 00000000..2f50d620 --- /dev/null +++ b/src/main/scala/org/biodatageeks/sequila/ximmer/converters/GngsConverter.scala @@ -0,0 +1,103 @@ +/** + * Created by Krzysztof Kobyliński + */ +package org.biodatageeks.sequila.ximmer.converters + +import org.apache.spark.sql.{DataFrame, SparkSession} +import org.biodatageeks.sequila.utils.InternalParams + +import java.io.{File, PrintWriter} +import scala.collection.mutable.ListBuffer + +class GngsConverter extends Serializable{ + + def calculateStatsAndConvertToGngsFormat(outputPath: String, sample: String, meanCoverage : DataFrame, + statsDF : DataFrame): Unit = { + val spark = SparkSession.builder().getOrCreate() + calculateAndWriteStats(statsDF, outputPath, sample, spark) + writeSampleIntervalSummary(meanCoverage, outputPath, sample, spark) + } + + private def calculateAndWriteStats(statsDF: DataFrame,outputPath: String, sample: String, spark: SparkSession) : Unit = { + val row = statsDF.first(); + + val median = row.getShort(0) + val mean = row.getDouble(1) + val countNr = row.getLong(2).toDouble + val perc_bases_above_1 = row.getLong(3) / countNr * 100 + val perc_bases_above_5 = row.getLong(4) / countNr * 100 + val perc_bases_above_10 = row.getLong(5) / countNr * 100 + val perc_bases_above_20 = row.getLong(6) / countNr * 100 + val perc_bases_above_50 = row.getLong(7) / countNr * 100 + + val filename = outputPath + "/" +sample + ".stats.tsv" + val fileObject = new File(filename) + val pw = new PrintWriter(fileObject) + val resultList = ListBuffer[String]() + val statsHeader = "Median Coverage\tMean Coverage\tperc_bases_above_1\tperc_bases_above_5\tperc_bases_above_10\t" + + "perc_bases_above_20\tperc_bases_above_50" + pw.write(statsHeader) + resultList += statsHeader + pw.write("\n") + val statsLine = median + "\t" + mean + "\t" + perc_bases_above_1 + "\t" + perc_bases_above_5 + "\t" + perc_bases_above_10 + "\t" + perc_bases_above_20 + "\t" + perc_bases_above_50 + "\t" + pw.write(statsLine) + resultList += statsLine + println(s"Write file " + outputPath + "/sample_interval_summary/" + sample + ".stats.tsv") + pw.close() + + if (spark.conf.get(InternalParams.saveAsSparkFormat).toBoolean) { + import spark.implicits._ + val resultDF = spark.sparkContext.parallelize(resultList).toDF() + resultDF.write + .option("delimiter", "\t") + .csv(outputPath + "/spark" + "/" + sample + "-stats") + } + } + + private def writeSampleIntervalSummary(meanCoverage: DataFrame, outputPath: String, sample: String, spark: SparkSession): Unit = { + import spark.implicits._ + + val regionsAndMeans = meanCoverage.mapPartitions(rowIterator => rowIterator.map( + row => { + val chr = row.getString(0) + val start = row.getString(1) + var end = row.getString(2).toInt + end = end - 1 + val mean = row.getDouble(3).toString + val region = chr + ":" + start + "-" + end.toString + (region, mean) + } + )).collect() + + var regions = regionsAndMeans + .map(x => x._1) + .toList + regions = "sample" +: regions + + var means = regionsAndMeans + .map(x => x._2) + .toList + means = sample +: means + + val filename = outputPath + "/" + sample + ".calc_target_covs.sample_interval_summary" + val fileObject = new File(filename) + val pw = new PrintWriter(fileObject) + val resultList = ListBuffer[String]() + pw.write(regions.mkString("\t")) + resultList += regions.mkString("\t") + pw.write("\n") + pw.write(means.mkString("\t")) + resultList += means.mkString("\t") + println(s"Write file " + outputPath + "/sample_interval_summary/" + sample + ".calc_target_covs.sample_interval_summary") + pw.close() + + if (spark.conf.get(InternalParams.saveAsSparkFormat).toBoolean) { + import spark.implicits._ + val resultDF = spark.sparkContext.parallelize(resultList).toDF() + resultDF.write + .option("delimiter", "\t") + .csv(outputPath + "/spark" + "/" + sample + "-summary") + } + } + +} diff --git a/src/test/resources/ximmer/cnmops/expected.cnmops.json b/src/test/resources/ximmer/cnmops/expected.cnmops.json new file mode 100644 index 00000000..095e55f6 --- /dev/null +++ b/src/test/resources/ximmer/cnmops/expected.cnmops.json @@ -0,0 +1,211 @@ +{ + "type": "S4", + "attributes": { + "seqnames": { + "type": "S4", + "attributes": { + "values": { + "type": "integer", + "attributes": { + "levels": { + "type": "character", + "attributes": {}, + "value": ["chr1", "chr2", "chrX"] + }, + "class": { + "type": "character", + "attributes": {}, + "value": ["factor"] + } + }, + "value": [1, 2, 3] + }, + "lengths": { + "type": "integer", + "attributes": {}, + "value": [2, 1, 11] + }, + "elementMetadata": { + "type": "NULL" + }, + "metadata": { + "type": "list", + "attributes": {}, + "value": [] + } + }, + "value": { + "class": "Rle", + "package": "S4Vectors" + } + }, + "ranges": { + "type": "S4", + "attributes": { + "start": { + "type": "integer", + "attributes": {}, + "value": [2781951, 2781992, 2782031, 2789524, 2794531, 2830004, 2843068, 2854014, 115640328, 115643298, 115644992, 154993001, 154996864, 154999442] + }, + "width": { + "type": "integer", + "attributes": {}, + "value": [40, 38, 76, 176, 212, 179, 276, 218, 191, 221, 182, 197, 206, 194] + }, + "NAMES": { + "type": "NULL" + }, + "elementType": { + "type": "character", + "attributes": {}, + "value": ["ANY"] + }, + "elementMetadata": { + "type": "NULL" + }, + "metadata": { + "type": "list", + "attributes": {}, + "value": [] + } + }, + "value": { + "class": "IRanges", + "package": "IRanges" + } + }, + "strand": { + "type": "S4", + "attributes": { + "values": { + "type": "integer", + "attributes": { + "levels": { + "type": "character", + "attributes": {}, + "value": ["+", "-", "*"] + }, + "class": { + "type": "character", + "attributes": {}, + "value": ["factor"] + } + }, + "value": [3] + }, + "lengths": { + "type": "integer", + "attributes": {}, + "value": [14] + }, + "elementMetadata": { + "type": "NULL" + }, + "metadata": { + "type": "list", + "attributes": {}, + "value": [] + } + }, + "value": { + "class": "Rle", + "package": "S4Vectors" + } + }, + "seqinfo": { + "type": "S4", + "attributes": { + "seqnames": { + "type": "character", + "attributes": {}, + "value": ["chr1", "chr2", "chrX"] + }, + "seqlengths": { + "type": "integer", + "attributes": {}, + "value": ["NA", "NA", "NA"] + }, + "is_circular": { + "type": "logical", + "attributes": {}, + "value": [null, null, null] + }, + "genome": { + "type": "character", + "attributes": {}, + "value": [null, null, null] + } + }, + "value": { + "class": "Seqinfo", + "package": "GenomeInfoDb" + } + }, + "elementMetadata": { + "type": "S4", + "attributes": { + "rownames": { + "type": "NULL" + }, + "nrows": { + "type": "integer", + "attributes": {}, + "value": [14] + }, + "listData": { + "type": "list", + "attributes": { + "names": { + "type": "character", + "attributes": {}, + "value": ["XI001", "XI002"] + } + }, + "value": [ + { + "type": "integer", + "attributes": {}, + "value": [9, 21, 32, 30, 73, 32, 60, 67, 75, 58, 64, 61, 55, 90] + }, + { + "type": "integer", + "attributes": {}, + "value": [13, 24, 56, 44, 82, 47, 76, 81, 105, 67, 66, 58, 60, 127] + } + ] + }, + "elementType": { + "type": "character", + "attributes": {}, + "value": ["ANY"] + }, + "elementMetadata": { + "type": "NULL" + }, + "metadata": { + "type": "list", + "attributes": {}, + "value": [] + } + }, + "value": { + "class": "DFrame", + "package": "S4Vectors" + } + }, + "elementType": { + "type": "character", + "attributes": {}, + "value": ["ANY"] + }, + "metadata": { + "type": "list", + "attributes": {}, + "value": [] + } + }, + "value": { + "class": "GRanges", + "package": "GenomicRanges" + } +} \ No newline at end of file diff --git a/src/test/resources/ximmer/cnmops/expected_cov_cnmops_XI001.txt b/src/test/resources/ximmer/cnmops/expected_cov_cnmops_XI001.txt new file mode 100644 index 00000000..8342ed37 --- 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a/src/test/resources/ximmer/converter_tests_input/stats_XI001.csv b/src/test/resources/ximmer/converter_tests_input/stats_XI001.csv new file mode 100644 index 00000000..9022943d --- /dev/null +++ b/src/test/resources/ximmer/converter_tests_input/stats_XI001.csv @@ -0,0 +1 @@ +29,32.1374280362765,1797086,1792469,1758456,1652253,1260675,274108 \ No newline at end of file diff --git a/src/test/resources/ximmer/converter_tests_input/target_counts_XI001.csv b/src/test/resources/ximmer/converter_tests_input/target_counts_XI001.csv new file mode 100644 index 00000000..12a9c587 --- /dev/null +++ b/src/test/resources/ximmer/converter_tests_input/target_counts_XI001.csv @@ -0,0 +1,14 @@ +chr1,2781951,2781991,5,9,8,7 +chr1,2781992,2782030,14,21,25,22 +chr2,2782031,2782107,19,32,28,31 +chrX,2789524,2789700,25,30,36,31 +chrX,2794531,2794743,48,73,72,71 +chrX,2830004,2830183,20,32,35,31 +chrX,2843068,2843344,38,60,60,61 +chrX,2854014,2854232,47,67,72,66 +chrX,115640328,115640519,54,75,100,76 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+chrX,154999442,154999636,79,127,138,125 diff --git a/src/test/resources/ximmer/coverage_test_input/XI001.hg38.sorted.bam b/src/test/resources/ximmer/coverage_test_input/XI001.hg38.sorted.bam new file mode 100644 index 00000000..b2452a88 Binary files /dev/null and b/src/test/resources/ximmer/coverage_test_input/XI001.hg38.sorted.bam differ diff --git a/src/test/resources/ximmer/coverage_test_input/XI001.hg38.sorted.bam.bai b/src/test/resources/ximmer/coverage_test_input/XI001.hg38.sorted.bam.bai new file mode 100644 index 00000000..f7e5ae65 Binary files /dev/null and b/src/test/resources/ximmer/coverage_test_input/XI001.hg38.sorted.bam.bai differ diff --git a/src/test/resources/ximmer/coverage_test_input/hg38.bed b/src/test/resources/ximmer/coverage_test_input/hg38.bed new file mode 100644 index 00000000..2997895c --- /dev/null +++ b/src/test/resources/ximmer/coverage_test_input/hg38.bed @@ -0,0 +1,6157 @@ +chrX 2782017 2782235 XG 1 +chrX 2789524 2789700 XG 1 +chrX 2794531 2794743 XG 1 +chrX 2797279 2797449 XG 1 +chrX 2806697 2806879 XG 1 +chrX 2808239 2808359 XG 1 +chrX 2811338 2811520 XG 1 +chrX 2814298 2814569 XG 1 +chrX 2830004 2830183 GYG2 1 +chrX 2843068 2843344 GYG2 1 +chrX 2854014 2854232 GYG2 1 +chrX 2854913 2855116 GYG2 1 +chrX 2856406 2856594 GYG2 1 +chrX 2859768 2860024 GYG2 1 +chrX 2861506 2861736 GYG2 1 +chrX 2875740 2875919 GYG2 1 +chrX 2877093 2877290 GYG2 1 +chrX 2881063 2881349 GYG2 1 +chrX 2898062 2898183 Intergenic_2587 1 +chrX 2904883 2905243 ARSD 1 +chrX 2907206 2907619 ARSD 1 +chrX 2908666 2908836 ARSD 1 +chrX 2909949 2910069 ARSD 1 +chrX 2910550 2910750 ARSD 1 +chrX 2914509 2914789 ARSD 1 +chrX 2915589 2915780 ARSD 1 +chrX 2917780 2918250 ARSD 1 +chrX 2920538 2920821 ARSD 1 +chrX 2921809 2921988 ARSD 1 +chrX 2925745 2925865 ARSD 1 +chrX 2929187 2929375 ARSD 1 +chrX 2934892 2935068 ARSE 1 +chrX 2935138 2935258 ARSE 1 +chrX 2936675 2936863 ARSE 1 +chrX 2938230 2938350 ARSE 1 +chrX 2942968 2943168 ARSE 1 +chrX 2946040 2946225 ARSE 1 +chrX 2949232 2949672 ARSE 1 +chrX 2953106 2953294 ARSE 1 +chrX 2955451 2955642 ARSE 1 +chrX 2958326 2958529 ARSE 1 +chrX 2959509 2959733 ARSE 1 +chrX 2960306 2960476 ARSE 1 +chrX 3006483 3006701 ARSH 1 +chrX 3009933 3010115 ARSH 1 +chrX 3012937 3013140 ARSH 1 +chrX 3014985 3015437 ARSH 1 +chrX 3018504 3018701 ARSH 1 +chrX 3024053 3024253 ARSH 1 +chrX 3027359 3027559 ARSH 1 +chrX 3029168 3029380 ARSH 1 +chrX 3032987 3033439 ARSH 1 +chrX 3068004 3068189 ARSF 1 +chrX 3072075 3072275 ARSF 1 +chrX 3076583 3076753 ARSF 1 +chrX 3080866 3081084 ARSF 1 +chrX 3084276 3084707 ARSF 1 +chrX 3089439 3089621 ARSF 1 +chrX 3100978 3101181 ARSF 1 +chrX 3103817 3103993 ARSF 1 +chrX 3110014 3110214 ARSF 1 +chrX 3112094 3112673 ARSF 1 +chrX 3271708 3271896 LINC01546 1 +chrX 3272165 3272380 LINC01546 1 +chrX 3276907 3277107 LINC01546 1 +chrX 3284071 3284369 LINC01546 1 +chrX 3309609 3309880 MXRA5 1 +chrX 3309929 3310049 MXRA5 1 +chrX 3310095 3310292 MXRA5 1 +chrX 3310830 3311009 MXRA5 1 +chrX 3311064 3311400 MXRA5 1 +chrX 3311470 3311590 MXRA5 1 +chrX 3317164 3317761 MXRA5 1 +chrX 3317807 3318087 MXRA5 1 +chrX 3319946 3323956 MXRA5 1 +chrX 3324076 3324196 MXRA5 1 +chrX 3324346 3324928 MXRA5 1 +chrX 3329917 3330363 MXRA5 1 +chrX 3330566 3330793 MXRA5 1 +chrX 3343577 3343697 MXRA5 1 +chrX 3612276 3612396 PRKX 1 +chrX 3615678 3615878 PRKX 1 +chrX 3621229 3621429 PRKX 1 +chrX 3626521 3626641 PRKX 1 +chrX 3655209 3655329 PRKX 1 +chrX 3655375 3655495 PRKX 1 +chrX 3674586 3674706 PRKX 1 +chrX 3713071 3713241 PRKX 1 +chrX 3818415 3818591 LOC389906 1 +chrX 5892766 5892966 NLGN4X 1 +chrX 5903102 5903222 NLGN4X 1 +chrX 5903683 5903816 NLGN4X 1 +chrX 5903846 5903966 NLGN4X 1 +chrX 5909201 5909321 NLGN4X 1 +chrX 5991321 5991545 NLGN4X 1 +chrX 6029324 6029527 NLGN4X 1 +chrX 6032688 6032864 NLGN4X 1 +chrX 6151070 6151581 NLGN4X 1 +chrX 6383765 6383959 MIR4770 1 +chrX 7050186 7050487 PUDP 1 +chrX 7057706 7057903 PUDP 1 +chrX 7077260 7077522 PUDP 1 +chrX 7105703 7105873 PUDP 1 +chrX 7116974 7117147 PUDP 1 +chrX 7147910 7148187 STS 1 +chrX 7219500 7219780 STS 1 +chrX 7253240 7253434 STS 1 +chrX 7257309 7257657 STS 1 +chrX 7259364 7259825 STS 1 +chrX 7275978 7276172 STS 1 +chrX 7304984 7305193 STS 1 +chrX 7325249 7325443 STS 1 +chrX 7334000 7334194 STS 1 +chrX 7349872 7350330 STS 1 +chrX 7900537 7900817 PNPLA4 1 +chrX 7901913 7902089 PNPLA4 1 +chrX 7912008 7912229 PNPLA4 1 +chrX 7921754 7922200 PNPLA4 1 +chrX 7926003 7926194 PNPLA4 1 +chrX 8126954 8127139 MIR651 1 +chrX 8302587 8302707 Intergenic_2588 1 +chrX 8499234 8499354 Intergenic_2589 1 +chrX 8507741 8507861 Intergenic_2590 1 +chrX 8534310 8534513 ANOS1 1 +chrX 8535694 8535915 ANOS1 1 +chrX 8536825 8537004 ANOS1 1 +chrX 8539535 8539655 ANOS1 1 +chrX 8553909 8554136 ANOS1 1 +chrX 8568272 8568451 ANOS1 1 +chrX 8570438 8570629 ANOS1 1 +chrX 8585306 8585482 ANOS1 1 +chrX 8587758 8587955 ANOS1 1 +chrX 8597049 8597335 ANOS1 1 +chrX 8623580 8623759 ANOS1 1 +chrX 8685377 8685571 ANOS1 1 +chrX 8699582 8699776 ANOS1 1 +chrX 8731841 8732151 ANOS1 1 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GPR143 1 +chrX 9748480 9748686 GPR143 1 +chrX 9759215 9759409 GPR143 1 +chrX 9760746 9760916 GPR143 1 +chrX 9765577 9766017 GPR143 1 +chrX 9786261 9786781 SHROOM2 1 +chrX 9822892 9823012 SHROOM2 1 +chrX 9823052 9823172 SHROOM2 1 +chrX 9873627 9873833 SHROOM2 1 +chrX 9891002 9891202 SHROOM2 1 +chrX 9894305 9896680 SHROOM2 1 +chrX 9898067 9898264 SHROOM2 1 +chrX 9913889 9914074 SHROOM2 1 +chrX 9932073 9932839 SHROOM2 1 +chrX 9937064 9937658 SHROOM2 1 +chrX 9939222 9939401 SHROOM2 1 +chrX 9944708 9944988 SHROOM2 1 +chrX 9946750 9947012 SHROOM2 1 +chrX 9949200 9949480 SHROOM2 1 +chrX 9967414 9968082 CLDN34 1 +chrX 10063385 10063579 WWC3 1 +chrX 10067219 10067511 WWC3 1 +chrX 10078721 10078909 WWC3 1 +chrX 10079610 10079792 WWC3 1 +chrX 10090750 10090971 WWC3 1 +chrX 10094031 10094234 WWC3 1 +chrX 10098484 10098669 WWC3 1 +chrX 10109683 10109978 WWC3 1 +chrX 10116362 10116550 WWC3 1 +chrX 10117034 10117640 WWC3 1 +chrX 10122644 10122838 WWC3 1 +chrX 10124132 10124350 WWC3 1 +chrX 10125014 10125241 WWC3 1 +chrX 10126154 10126324 WWC3 1 +chrX 10127914 10128114 WWC3 1 +chrX 10128604 10128795 WWC3 1 +chrX 10130013 10130204 WWC3 1 +chrX 10134353 10134547 WWC3 1 +chrX 10136518 10136709 WWC3 1 +chrX 10138613 10138899 WWC3 1 +chrX 10139352 10139543 WWC3 1 +chrX 10141460 10141630 WWC3 1 +chrX 10184924 10185142 CLCN4 1 +chrX 10187416 10187592 CLCN4 1 +chrX 10194916 10195107 CLCN4 1 +chrX 10197896 10198111 CLCN4 1 +chrX 10206415 10206861 CLCN4 1 +chrX 10208080 10208668 CLCN4 1 +chrX 10212390 10212599 CLCN4 1 +chrX 10213719 10214159 CLCN4 1 +chrX 10220553 10220860 CLCN4 1 +chrX 10233427 10233701 CLCN4 1 +chrX 10449331 10449691 MID1 1 +chrX 10454909 10455100 MID1 1 +chrX 10459701 10459892 MID1 1 +chrX 10469451 10469826 MID1 1 +chrX 10474543 10475137 MID1 1 +chrX 10482519 10482728 MID1 1 +chrX 10495543 10495734 MID1 1 +chrX 10501397 10501591 MID1 1 +chrX 10506398 10506586 MID1 1 +chrX 10523018 10523197 MID1 1 +chrX 10565164 10565529 MID1 1 +chrX 10566795 10567570 MID1 1 +chrX 11111921 11112115 HCCS 1 +chrX 11114738 11114938 HCCS 1 +chrX 11117237 11117437 HCCS 1 +chrX 11118490 11118684 HCCS 1 +chrX 11120864 11121076 HCCS 1 +chrX 11121534 11121888 HCCS 1 +chrX 11138752 11139533 ARHGAP6 1 +chrX 11142187 11142360 ARHGAP6 1 +chrX 11143755 11144198 ARHGAP6 1 +chrX 11148632 11148847 ARHGAP6 1 +chrX 11156543 11156752 ARHGAP6 1 +chrX 11169569 11169745 ARHGAP6 1 +chrX 11178004 11178207 ARHGAP6 1 +chrX 11179207 11179401 ARHGAP6 1 +chrX 11182044 11182250 ARHGAP6 1 +chrX 11186191 11186400 ARHGAP6 1 +chrX 11188772 11189070 ARHGAP6 1 +chrX 11196800 11197000 ARHGAP6 1 +chrX 11254542 11254772 ARHGAP6 1 +chrX 11290300 11290506 ARHGAP6 1 +chrX 11294782 11294970 AMELX 1 +chrX 11296777 11296947 AMELX 1 +chrX 11298104 11298274 AMELX 1 +chrX 11298615 11299055 AMELX 1 +chrX 11300522 11300722 AMELX 1 +chrX 11427534 11427734 ARHGAP6 1 +chrX 11664214 11664888 ARHGAP6 1 +chrX 11758234 11758407 MSL3 1 +chrX 11758606 11758794 MSL3 1 +chrX 11759808 11759984 MSL3 1 +chrX 11760425 11760595 MSL3 1 +chrX 11760759 11760971 MSL3 1 +chrX 11761503 11761694 MSL3 1 +chrX 11762165 11762353 MSL3 1 +chrX 11762962 11763082 MSL3 1 +chrX 11763834 11764019 MSL3 1 +chrX 11765505 11765930 MSL3 1 +chrX 11768602 11768790 MSL3 1 +chrX 11772180 11772350 MSL3 1 +chrX 11772717 11772837 MSL3 1 +chrX 11774912 11775189 MSL3 1 +chrX 12138795 12139081 FRMPD4 1 +chrX 12341498 12341704 FRMPD4 1 +chrX 12498708 12498878 FRMPD4 1 +chrX 12609631 12609837 FRMPD4 1 +chrX 12614660 12614857 FRMPD4 1 +chrX 12674797 12674997 FRMPD4 1 +chrX 12683488 12683709 FRMPD4 1 +chrX 12686113 12686319 FRMPD4 1 +chrX 12690085 12690285 FRMPD4 1 +chrX 12694345 12694569 FRMPD4 1 +chrX 12701916 12702107 FRMPD4 1 +chrX 12704336 12704506 FRMPD4 1 +chrX 12706827 12707045 FRMPD4 1 +chrX 12707384 12707602 FRMPD4 1 +chrX 12708903 12709100 FRMPD4 1 +chrX 12710307 12710501 FRMPD4 1 +chrX 12716021 12717101 FRMPD4 1 +chrX 12717530 12718865 FRMPD4 1 +chrX 12720428 12721923 FRMPD4 1 +chrX 12791427 12791621 PRPS2 1 +chrX 12799268 12799474 PRPS2 1 +chrX 12809167 12809397 PRPS2 1 +chrX 12810008 12810297 PRPS2 1 +chrX 12819436 12819618 PRPS2 1 +chrX 12820608 12820823 PRPS2 1 +chrX 12822621 12822916 PRPS2 1 +chrX 12867401 12867616 TLR7 1 +chrX 12885493 12888730 TLR7 1 +chrX 12906640 12906831 TLR8 1 +chrX 12910261 12910476 TLR8 1 +chrX 12918982 12922210 TLR8 1 +chrX 12975050 12975330 TMSB4X 1 +chrX 12976161 12976281 TMSB4X 1 +chrX 13038403 13038585 FAM9C 1 +chrX 13039776 13039946 FAM9C 1 +chrX 13040738 13040929 FAM9C 1 +chrX 13042902 13043093 FAM9C 1 +chrX 13043142 13043262 FAM9C 1 +chrX 13043721 13043936 FAM9C 1 +chrX 13318769 13320030 ATXN3L 1 +chrX 13569724 13570010 EGFL6 1 +chrX 13589499 13589723 EGFL6 1 +chrX 13594736 13594906 EGFL6 1 +chrX 13600009 13600197 EGFL6 1 +chrX 13603213 13603404 EGFL6 1 +chrX 13606336 13606551 EGFL6 1 +chrX 13608227 13608421 EGFL6 1 +chrX 13617702 13618074 EGFL6 1 +chrX 13619090 13619305 EGFL6 1 +chrX 13623833 13624030 EGFL6 1 +chrX 13626958 13627259 EGFL6 1 +chrX 13632933 13633183 EGFL6 1 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13772933 GPM6B 1 +chrX 13774440 13774696 GPM6B 1 +chrX 13776210 13776395 GPM6B 1 +chrX 13777228 13777434 GPM6B 1 +chrX 13779728 13779928 GPM6B 1 +chrX 13780922 13781119 GPM6B 1 +chrX 13783396 13783587 GPM6B 1 +chrX 13783755 13783940 GPM6B 1 +chrX 13785683 13785889 GPM6B 1 +chrX 13807684 13807869 GPM6B 1 +chrX 13816758 13817068 GPM6B 1 +chrX 13938496 13938690 GPM6B 1 +chrX 14008795 14008915 GEMIN8 1 +chrX 14008964 14009244 GEMIN8 1 +chrX 14020170 14020450 GEMIN8 1 +chrX 14020511 14020631 GEMIN8 1 +chrX 14021449 14021661 GEMIN8 1 +chrX 14529960 14530157 GLRA2 1 +chrX 14531100 14531285 GLRA2 1 +chrX 14532154 14532330 GLRA2 1 +chrX 14574301 14574581 GLRA2 1 +chrX 14581109 14581419 GLRA2 1 +chrX 14604282 14604494 GLRA2 1 +chrX 14607084 14607287 GLRA2 1 +chrX 14608949 14609122 GLRA2 1 +chrX 14690747 14690953 GLRA2 1 +chrX 14730134 14730565 GLRA2 1 +chrX 14843497 14843934 FANCB 1 +chrX 14844459 14845284 FANCB 1 +chrX 14850423 14850632 FANCB 1 +chrX 14853029 14853238 FANCB 1 +chrX 14857780 14857962 FANCB 1 +chrX 14859193 14859375 FANCB 1 +chrX 14864465 14865539 FANCB 1 +chrX 14873471 14873849 MOSPD2 1 +chrX 14892739 14892918 MOSPD2 1 +chrX 14895307 14895525 MOSPD2 1 +chrX 14897105 14897317 MOSPD2 1 +chrX 14900504 14900707 MOSPD2 1 +chrX 14902821 14903012 MOSPD2 1 +chrX 14908833 14909012 MOSPD2 1 +chrX 14911185 14911400 MOSPD2 1 +chrX 14912249 14912425 MOSPD2 1 +chrX 14914429 14914608 MOSPD2 1 +chrX 14915600 14915779 MOSPD2 1 +chrX 14916116 14916334 MOSPD2 1 +chrX 14918687 14918887 MOSPD2 1 +chrX 14919673 14919929 MOSPD2 1 +chrX 15244384 15244664 ASB9 1 +chrX 15248684 15248991 ASB9 1 +chrX 15250468 15250650 ASB9 1 +chrX 15252294 15252494 ASB9 1 +chrX 15254630 15254818 ASB9 1 +chrX 15258880 15259074 ASB9 1 +chrX 15269708 15270018 ASB9 1 +chrX 15283393 15283664 ASB11 1 +chrX 15287927 15288151 ASB11 1 +chrX 15289485 15289700 ASB11 1 +chrX 15290044 15290164 ASB11 1 +chrX 15293219 15293398 ASB11 1 +chrX 15297488 15297709 ASB11 1 +chrX 15302622 15302795 ASB11 1 +chrX 15314353 15314556 ASB11 1 +chrX 15315432 15315709 ASB11 1 +chrX 15321423 15321869 PIGA 1 +chrX 15324588 15325093 PIGA 1 +chrX 15325954 15326124 PIGA 1 +chrX 15331279 15332057 PIGA 1 +chrX 15335463 15335681 PIGA 1 +chrX 15345980 15346322 VEGFD 1 +chrX 15347101 15347298 VEGFD 1 +chrX 15352978 15353187 VEGFD 1 +chrX 15355114 15355326 VEGFD 1 +chrX 15357922 15358125 VEGFD 1 +chrX 15363047 15363262 VEGFD 1 +chrX 15383804 15384081 VEGFD 1 +chrX 15384912 15385183 PIR 1 +chrX 15390132 15390302 PIR 1 +chrX 15397389 15397583 PIR 1 +chrX 15407376 15407567 PIR 1 +chrX 15425850 15426050 PIR 1 +chrX 15455805 15455987 PIR 1 +chrX 15459586 15459804 PIR 1 +chrX 15479659 15479829 PIR 1 +chrX 15491209 15491379 PIR 1 +chrX 15508354 15508554 BMX 1 +chrX 15509238 15509438 BMX 1 +chrX 15511434 15511652 BMX 1 +chrX 15515996 15516199 BMX 1 +chrX 15517875 15518057 BMX 1 +chrX 15522320 15522597 BMX 1 +chrX 15525271 15525456 BMX 1 +chrX 15525935 15526123 BMX 1 +chrX 15529959 15530159 BMX 1 +chrX 15531300 15531485 BMX 1 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15688883 15689003 CA5BP1 1 +chrX 15693065 15693185 CA5BP1 1 +chrX 15702808 15703224 CA5BP1 1 +chrX 15749914 15750108 CA5B 1 +chrX 15762676 15762894 CA5B 1 +chrX 15764504 15764624 CA5B 1 +chrX 15766852 15767043 CA5B 1 +chrX 15772529 15772711 CA5B 1 +chrX 15774404 15774524 CA5B 1 +chrX 15775152 15775358 CA5B 1 +chrX 15776676 15776903 CA5B 1 +chrX 15782506 15782715 CA5B 1 +chrX 15790479 15790664 ZRSR2 1 +chrX 15790948 15791136 ZRSR2 1 +chrX 15799887 15800066 ZRSR2 1 +chrX 15801506 15801626 ZRSR2 1 +chrX 15803766 15803886 ZRSR2 1 +chrX 15804128 15804313 ZRSR2 1 +chrX 15808106 15808285 ZRSR2 1 +chrX 15809292 15809412 ZRSR2 1 +chrX 15815838 15815958 ZRSR2 1 +chrX 15818589 15818759 ZRSR2 1 +chrX 15820236 15820412 ZRSR2 1 +chrX 15822779 15823329 ZRSR2 1 +chrX 15827152 15827441 AP1S2 1 +chrX 15828035 15828235 AP1S2 1 +chrX 15832827 15833092 AP1S2 1 +chrX 15833367 15833540 AP1S2 1 +chrX 15840422 15840625 AP1S2 1 +chrX 15845422 15845622 AP1S2 1 +chrX 15845931 15846104 AP1S2 1 +chrX 15852409 15852609 AP1S2 1 +chrX 15854713 15854904 AP1S2 1 +chrX 16123840 16124342 GRPR 1 +chrX 16150354 16150714 GRPR 1 +chrX 16152284 16152727 GRPR 1 +chrX 16170348 16171428 MAGEB17 1 +chrX 16590689 16590880 CTPS2 1 +chrX 16609470 16609694 CTPS2 1 +chrX 16617097 16617297 CTPS2 1 +chrX 16620228 16620425 CTPS2 1 +chrX 16626966 16627181 CTPS2 1 +chrX 16638711 16638911 CTPS2 1 +chrX 16639058 16639273 CTPS2 1 +chrX 16650895 16651122 CTPS2 1 +chrX 16654369 16654655 CTPS2 1 +chrX 16667503 16667727 CTPS2 1 +chrX 16670517 16670723 CTPS2 1 +chrX 16678260 16678481 CTPS2 1 +chrX 16683128 16683316 CTPS2 1 +chrX 16689437 16689625 CTPS2 1 +chrX 16691509 16691721 CTPS2 1 +chrX 16693199 16693568 CTPS2 1 +chrX 16698179 16698397 CTPS2 1 +chrX 16698850 16699041 CTPS2 1 +chrX 16702674 16702862 CTPS2 1 +chrX 16719626 16719906 SYAP1 1 +chrX 16735200 16735370 SYAP1 1 +chrX 16736173 16736358 SYAP1 1 +chrX 16741616 16741822 SYAP1 1 +chrX 16743652 16743855 SYAP1 1 +chrX 16754873 16755043 SYAP1 1 +chrX 16756603 16756782 SYAP1 1 +chrX 16757132 16757335 SYAP1 1 +chrX 16760232 16760509 SYAP1 1 +chrX 16786357 16786545 TXLNG 1 +chrX 16818578 16818932 TXLNG 1 +chrX 16820172 16820357 TXLNG 1 +chrX 16828150 16828335 TXLNG 1 +chrX 16829497 16829718 TXLNG 1 +chrX 16832534 16832707 TXLNG 1 +chrX 16834288 16834479 TXLNG 1 +chrX 16837613 16837813 TXLNG 1 +chrX 16839840 16840022 TXLNG 1 +chrX 16841420 16841860 TXLNG 1 +chrX 16844881 16845158 RBBP7 1 +chrX 16845785 16845982 RBBP7 1 +chrX 16849049 16849326 RBBP7 1 +chrX 16851950 16852150 RBBP7 1 +chrX 16852335 16852831 RBBP7 1 +chrX 16853666 16853872 RBBP7 1 +chrX 16854859 16855041 RBBP7 1 +chrX 16857509 16857730 RBBP7 1 +chrX 16858671 16858862 RBBP7 1 +chrX 16862918 16863142 RBBP7 1 +chrX 16869033 16869233 RBBP7 1 +chrX 16869448 16869734 RBBP7 1 +chrX 16869848 16870226 RBBP7 1 +chrX 16946741 16947202 REPS2 1 +chrX 17006176 17006376 REPS2 1 +chrX 17022036 17022242 REPS2 1 +chrX 17024946 17025155 REPS2 1 +chrX 17029429 17029599 REPS2 1 +chrX 17047269 17047439 REPS2 1 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18575333 18575512 CDKL5 1 +chrX 18579801 18579992 CDKL5 1 +chrX 18581826 18582017 CDKL5 1 +chrX 18584222 18584440 CDKL5 1 +chrX 18588005 18588223 CDKL5 1 +chrX 18595212 18595421 CDKL5 1 +chrX 18598437 18598634 CDKL5 1 +chrX 18603839 18604812 CDKL5 1 +chrX 18608749 18608976 CDKL5 1 +chrX 18609372 18609554 CDKL5 1 +chrX 18613119 18613310 CDKL5 1 +chrX 18619756 18619971 CDKL5 1 +chrX 18625021 18625212 CDKL5 1 +chrX 18628305 18628576 CDKL5 1 +chrX 18641959 18642248 RS1 1 +chrX 18644397 18644597 RS1 1 +chrX 18645924 18646103 RS1 1 +chrX 18647233 18647424 RS1 1 +chrX 18650397 18650603 RS1 1 +chrX 18653501 18653674 RS1 1 +chrX 18656530 18656736 RS1 1 +chrX 18657618 18657827 RS1 1 +chrX 18671976 18672206 RS1 1 +chrX 18707643 18707846 PPEF1 1 +chrX 18730135 18730356 PPEF1 1 +chrX 18733632 18733811 PPEF1 1 +chrX 18749699 18749911 PPEF1 1 +chrX 18757577 18757783 PPEF1 1 +chrX 18761425 18761634 PPEF1 1 +chrX 18778962 18779162 PPEF1 1 +chrX 18782232 18782408 PPEF1 1 +chrX 18783906 18784115 PPEF1 1 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18941528 18941722 PHKA2 1 +chrX 18943733 18943915 PHKA2 1 +chrX 18944963 18945157 PHKA2 1 +chrX 18948714 18948914 PHKA2 1 +chrX 18951147 18951332 PHKA2 1 +chrX 18952372 18952554 PHKA2 1 +chrX 18954160 18954357 PHKA2 1 +chrX 18983782 18984080 PHKA2 1 +chrX 18990788 18991124 ADGRG2 1 +chrX 18994865 18995080 ADGRG2 1 +chrX 18996013 18996210 ADGRG2 1 +chrX 18999057 18999334 ADGRG2 1 +chrX 18999747 18999944 ADGRG2 1 +chrX 19002773 19003059 ADGRG2 1 +chrX 19004691 19004894 ADGRG2 1 +chrX 19006017 19006288 ADGRG2 1 +chrX 19007252 19007458 ADGRG2 1 +chrX 19007939 19008163 ADGRG2 1 +chrX 19009573 19009788 ADGRG2 1 +chrX 19010670 19010855 ADGRG2 1 +chrX 19013602 19014027 ADGRG2 1 +chrX 19019549 19019770 ADGRG2 1 +chrX 19021104 19021325 ADGRG2 1 +chrX 19023406 19023600 ADGRG2 1 +chrX 19023777 19023968 ADGRG2 1 +chrX 19027086 19027271 ADGRG2 1 +chrX 19028110 19028301 ADGRG2 1 +chrX 19030958 19031170 ADGRG2 1 +chrX 19033602 19033799 ADGRG2 1 +chrX 19035803 19035985 ADGRG2 1 +chrX 19037526 19037696 ADGRG2 1 +chrX 19039197 19039394 ADGRG2 1 +chrX 19040082 19040270 ADGRG2 1 +chrX 19068690 19068869 ADGRG2 1 +chrX 19343890 19344090 PDHA1 1 +chrX 19345751 19345930 PDHA1 1 +chrX 19346540 19346710 PDHA1 1 +chrX 19349238 19349429 PDHA1 1 +chrX 19349977 19350183 PDHA1 1 +chrX 19351309 19351485 PDHA1 1 +chrX 19353027 19353307 PDHA1 1 +chrX 19354427 19354624 PDHA1 1 +chrX 19355380 19355841 PDHA1 1 +chrX 19357660 19357860 PDHA1 1 +chrX 19358929 19359126 PDHA1 1 +chrX 19359530 19359718 PDHA1 1 +chrX 19360644 19360998 PDHA1 1 +chrX 19361207 19361724 PDHA1 1 +chrX 19362705 19362902 MAP3K15 1 +chrX 19369111 19369284 MAP3K15 1 +chrX 19370974 19371183 MAP3K15 1 +chrX 19371394 19371594 MAP3K15 1 +chrX 19372636 19372851 MAP3K15 1 +chrX 19373440 19373640 MAP3K15 1 +chrX 19374483 19374710 MAP3K15 1 +chrX 19380038 19380229 MAP3K15 1 +chrX 19392023 19392217 MAP3K15 1 +chrX 19392301 19392522 MAP3K15 1 +chrX 19394999 19395214 MAP3K15 1 +chrX 19398267 19398452 MAP3K15 1 +chrX 19400534 19400731 MAP3K15 1 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19683956 SH3KBP1 1 +chrX 19687493 19687693 SH3KBP1 1 +chrX 19694979 19695197 SH3KBP1 1 +chrX 19695651 19695833 SH3KBP1 1 +chrX 19706922 19707113 SH3KBP1 1 +chrX 19740646 19740822 SH3KBP1 1 +chrX 19746243 19746440 SH3KBP1 1 +chrX 19747538 19747708 SH3KBP1 1 +chrX 19799591 19799800 SH3KBP1 1 +chrX 19836028 19836228 SH3KBP1 1 +chrX 19887240 19887455 SH3KBP1 1 +chrX 19917119 19917375 BCLAF3 1 +chrX 19923289 19923510 BCLAF3 1 +chrX 19929730 19930072 BCLAF3 1 +chrX 19930444 19930564 BCLAF3 1 +chrX 19935750 19935941 BCLAF3 1 +chrX 19937315 19937518 BCLAF3 1 +chrX 19950695 19950874 BCLAF3 1 +chrX 19952913 19953107 BCLAF3 1 +chrX 19953680 19953880 BCLAF3 1 +chrX 19955423 19955593 BCLAF3 1 +chrX 19965070 19965744 BCLAF3 1 +chrX 19966061 19966670 BCLAF3 1 +chrX 19970234 19970413 BCLAF3 1 +chrX 20010838 20011127 MAP7D2 1 +chrX 20012296 20012478 MAP7D2 1 +chrX 20012980 20013201 MAP7D2 1 +chrX 20013421 20013624 MAP7D2 1 +chrX 20015249 20015434 MAP7D2 1 +chrX 20016051 20016310 MAP7D2 1 +chrX 20017034 20017231 MAP7D2 1 +chrX 20024850 20025041 MAP7D2 1 +chrX 20025736 20026028 MAP7D2 1 +chrX 20042489 20042695 MAP7D2 1 +chrX 20044415 20044615 MAP7D2 1 +chrX 20044644 20044829 MAP7D2 1 +chrX 20049697 20049894 MAP7D2 1 +chrX 20050787 20050987 MAP7D2 1 +chrX 20052112 20052297 MAP7D2 1 +chrX 20052493 20052696 MAP7D2 1 +chrX 20052903 20053079 MAP7D2 1 +chrX 20055757 20055927 MAP7D2 1 +chrX 20056710 20056907 MAP7D2 1 +chrX 20063440 20063658 MAP7D2 1 +chrX 20064651 20064866 MAP7D2 1 +chrX 20116662 20116853 MAP7D2 1 +chrX 20130536 20130709 EIF1AX 1 +chrX 20132197 20132367 EIF1AX 1 +chrX 20133806 20134036 EIF1AX 1 +chrX 20135764 20135949 EIF1AX 1 +chrX 20138555 20138731 EIF1AX 1 +chrX 20155268 20155536 RPS6KA3 1 +chrX 20156108 20156305 RPS6KA3 1 +chrX 20161584 20161769 RPS6KA3 1 +chrX 20162877 20163056 RPS6KA3 1 +chrX 20164858 20165049 RPS6KA3 1 +chrX 20167540 20167731 RPS6KA3 1 +chrX 20169359 20169571 RPS6KA3 1 +chrX 20172744 20172923 RPS6KA3 1 +chrX 20175140 20175322 RPS6KA3 1 +chrX 20176233 20176519 RPS6KA3 1 +chrX 20176864 20177085 RPS6KA3 1 +chrX 20186218 20186430 RPS6KA3 1 +chrX 20187801 20187983 RPS6KA3 1 +chrX 20188343 20188540 RPS6KA3 1 +chrX 20193364 20193585 RPS6KA3 1 +chrX 20194107 20194304 RPS6KA3 1 +chrX 20194986 20195162 RPS6KA3 1 +chrX 20203932 20204120 RPS6KA3 1 +chrX 20209266 20209469 RPS6KA3 1 +chrX 20218793 20218963 RPS6KA3 1 +chrX 20234742 20234948 RPS6KA3 1 +chrX 20266515 20266685 RPS6KA3 1 +chrX 21374712 21374980 CNKSR2 1 +chrX 21426421 21426603 CNKSR2 1 +chrX 21432621 21432800 CNKSR2 1 +chrX 21440682 21440864 CNKSR2 1 +chrX 21470758 21470961 CNKSR2 1 +chrX 21490406 21490633 CNKSR2 1 +chrX 21497668 21497862 CNKSR2 1 +chrX 21501450 21501638 CNKSR2 1 +chrX 21516442 21516657 CNKSR2 1 +chrX 21526848 21527078 CNKSR2 1 +chrX 21531801 21531992 CNKSR2 1 +chrX 21561397 21561573 CNKSR2 1 +chrX 21563301 21563501 CNKSR2 1 +chrX 21590450 21590626 CNKSR2 1 +chrX 21590965 21591183 CNKSR2 1 +chrX 21594886 21595080 CNKSR2 1 +chrX 21595226 21595432 CNKSR2 1 +chrX 21601230 21601400 CNKSR2 1 +chrX 21606743 21606955 CNKSR2 1 +chrX 21609088 21609703 CNKSR2 1 +chrX 21641521 21641703 CNKSR2 1 +chrX 21648798 21648998 CNKSR2 1 +chrX 21652309 21652669 CNKSR2 1 +chrX 21655765 21657888 KLHL34 1 +chrX 21737463 21737663 SMPX 1 +chrX 21743764 21743952 SMPX 1 +chrX 21754133 21754327 SMPX 1 +chrX 21839689 21839880 MBTPS2 1 +chrX 21843140 21843358 MBTPS2 1 +chrX 21845126 21845302 MBTPS2 1 +chrX 21851406 21851600 MBTPS2 1 +chrX 21853369 21853569 MBTPS2 1 +chrX 21856489 21857726 YY2 1 +chrX 21868440 21868655 MBTPS2 1 +chrX 21869511 21869764 MBTPS2 1 +chrX 21877994 21878173 MBTPS2 1 +chrX 21878500 21878697 MBTPS2 1 +chrX 21880876 21881064 MBTPS2 1 +chrX 21882403 21882745 MBTPS2 1 +chrX 21940834 21941428 SMS 1 +chrX 21967292 21967412 SMS 1 +chrX 21971968 21972088 SMS 1 +chrX 21972384 21972504 SMS 1 +chrX 21977200 21977320 SMS 1 +chrX 21978091 21978211 SMS 1 +chrX 21978952 21979072 SMS 1 +chrX 21984394 21984514 SMS 1 +chrX 21985217 21985337 SMS 1 +chrX 21992679 21992799 SMS 1 +chrX 22006999 22007196 Intergenic_2592 1 +chrX 22032865 22033068 PHEX 1 +chrX 22038459 22038653 PHEX 1 +chrX 22047057 22047260 PHEX 1 +chrX 22076297 22076500 PHEX 1 +chrX 22077439 22077728 PHEX 1 +chrX 22090329 22090523 PHEX 1 +chrX 22093904 22094116 PHEX 1 +chrX 22096938 22097138 PHEX 1 +chrX 22099020 22099196 PHEX 1 +chrX 22111413 22111613 PHEX 1 +chrX 22114415 22114612 PHEX 1 +chrX 22133413 22133628 PHEX 1 +chrX 22168277 22168492 PHEX 1 +chrX 22178152 22178364 PHEX 1 +chrX 22190336 22190545 PHEX 1 +chrX 22212806 22212988 PHEX 1 +chrX 22218951 22219139 PHEX 1 +chrX 22221649 22221825 PHEX 1 +chrX 22226372 22226587 PHEX 1 +chrX 22227509 22227721 PHEX 1 +chrX 22245252 22245425 PHEX 1 +chrX 22247854 22248081 PHEX 1 +chrX 22272907 22274387 CBLL2 1 +chrX 22999941 23002043 DDX53 1 +chrX 23334816 23335232 PTCHD1 1 +chrX 23379561 23380351 PTCHD1 1 +chrX 23392555 23394275 PTCHD1 1 +chrX 23664477 23664775 Intergenic_2593 1 +chrX 23667518 23667863 PRDX4 1 +chrX 23671436 23671627 PRDX4 1 +chrX 23674919 23675264 PRDX4 1 +chrX 23679110 23679322 PRDX4 1 +chrX 23682390 23682578 PRDX4 1 +chrX 23683512 23683712 PRDX4 1 +chrX 23685948 23686145 PRDX4 1 +chrX 23686195 23686410 PRDX4 1 +chrX 23703764 23704053 ACOT9 1 +chrX 23704642 23705070 ACOT9 1 +chrX 23705506 23705851 ACOT9 1 +chrX 23706646 23706852 ACOT9 1 +chrX 23707824 23708012 ACOT9 1 +chrX 23713115 23713285 ACOT9 1 +chrX 23721772 23721960 ACOT9 1 +chrX 23722668 23722874 ACOT9 1 +chrX 23730379 23730573 ACOT9 1 +chrX 23730836 23731039 ACOT9 1 +chrX 23733094 23733285 ACOT9 1 +chrX 23734193 23734378 ACOT9 1 +chrX 23735840 23736034 ACOT9 1 +chrX 23743054 23743260 ACOT9 1 +chrX 23783161 23783420 SAT1 1 +chrX 23783698 23784159 SAT1 1 +chrX 23785249 23785935 SAT1 1 +chrX 23840320 23840520 APOO 1 +chrX 23856181 23856384 APOO 1 +chrX 23858662 23858832 APOO 1 +chrX 23868683 23868803 APOO 1 +chrX 23874404 23874601 APOO 1 +chrX 23878949 23879119 APOO 1 +chrX 23880873 23881067 APOO 1 +chrX 23907678 23907872 APOO 1 +chrX 23910278 23910478 CXorf58 1 +chrX 23911637 23911858 CXorf58 1 +chrX 23915592 23915777 CXorf58 1 +chrX 23916163 23916443 CXorf58 1 +chrX 23927237 23927431 CXorf58 1 +chrX 23935200 23935477 CXorf58 1 +chrX 23938505 23938678 CXorf58 1 +chrX 23939216 23939475 CXorf58 1 +chrX 23987857 23989017 KLHL15 1 +chrX 24005954 24006735 KLHL15 1 +chrX 24054834 24055120 EIF2S3 1 +chrX 24055621 24055815 EIF2S3 1 +chrX 24057482 24057830 EIF2S3 1 +chrX 24060137 24060334 EIF2S3 1 +chrX 24062469 24062660 EIF2S3 1 +chrX 24064242 24064436 EIF2S3 1 +chrX 24066019 24066189 EIF2S3 1 +chrX 24068075 24068195 EIF2S3 1 +chrX 24071617 24071814 EIF2S3 1 +chrX 24073151 24073351 EIF2S3 1 +chrX 24076650 24076930 EIF2S3 1 +chrX 24172718 24172912 ZFX 1 +chrX 24173489 24173609 ZFX 1 +chrX 24179242 24179848 ZFX 1 +chrX 24207255 24207425 ZFX 1 +chrX 24207758 24207943 ZFX 1 +chrX 24208253 24208444 ZFX 1 +chrX 24208973 24209173 ZFX 1 +chrX 24210226 24210414 ZFX 1 +chrX 24210555 24211054 ZFX 1 +chrX 24211189 24211454 ZFX 1 +chrX 24308196 24308375 SUPT20HL2 1 +chrX 24310772 24310892 SUPT20HL2 1 +chrX 24310941 24311446 SUPT20HL2 1 +chrX 24311513 24311923 SUPT20HL2 1 +chrX 24312203 24312403 SUPT20HL2 1 +chrX 24312633 24312883 SUPT20HL2 1 +chrX 24313163 24313327 SUPT20HL2 1 +chrX 24313974 24314307 Intergenic_2594 1 +chrX 24316760 24316954 Intergenic_2595 1 +chrX 24362748 24362912 SUPT20HL1 1 +chrX 24363246 24363416 SUPT20HL1 1 +chrX 24363720 24363840 SUPT20HL1 1 +chrX 24364363 24364696 SUPT20HL1 1 +chrX 24364734 24365446 SUPT20HL1 1 +chrX 24465363 24465628 PDK3 1 +chrX 24494745 24494936 PDK3 1 +chrX 24498719 24498940 PDK3 1 +chrX 24503312 24503533 PDK3 1 +chrX 24505093 24505290 PDK3 1 +chrX 24518883 24519065 PDK3 1 +chrX 24526120 24526305 PDK3 1 +chrX 24527509 24527694 PDK3 1 +chrX 24528042 24528227 PDK3 1 +chrX 24531643 24531849 PDK3 1 +chrX 24533867 24534215 PDK3 1 +chrX 24539060 24539325 PDK3 1 +chrX 24561996 24562531 PCYT1B 1 +chrX 24575135 24575320 PCYT1B 1 +chrX 24579307 24579501 PCYT1B 1 +chrX 24587230 24587442 PCYT1B 1 +chrX 24589983 24590207 PCYT1B 1 +chrX 24607657 24607830 PCYT1B 1 +chrX 24619016 24619210 PCYT1B 1 +chrX 24646926 24647191 PCYT1B 1 +chrX 24672507 24672722 PCYT1B 1 +chrX 24693873 24694061 POLA1 1 +chrX 24699386 24699574 POLA1 1 +chrX 24703147 24703332 POLA1 1 +chrX 24704337 24704522 POLA1 1 +chrX 24714484 24714681 POLA1 1 +chrX 24715071 24715268 POLA1 1 +chrX 24716319 24716501 POLA1 1 +chrX 24716809 24716982 POLA1 1 +chrX 24717248 24717783 POLA1 1 +chrX 24723104 24723322 POLA1 1 +chrX 24724235 24724423 POLA1 1 +chrX 24725974 24726171 POLA1 1 +chrX 24726934 24727122 POLA1 1 +chrX 24727751 24727960 POLA1 1 +chrX 24732299 24732505 POLA1 1 +chrX 24733763 24733954 POLA1 1 +chrX 24735298 24735522 POLA1 1 +chrX 24737591 24737767 POLA1 1 +chrX 24739302 24739499 POLA1 1 +chrX 24741366 24741569 POLA1 1 +chrX 24741913 24742101 POLA1 1 +chrX 24743215 24743424 POLA1 1 +chrX 24744465 24744653 POLA1 1 +chrX 24745424 24745612 POLA1 1 +chrX 24748270 24748479 POLA1 1 +chrX 24748830 24749039 POLA1 1 +chrX 24809822 24810022 POLA1 1 +chrX 24810686 24810868 POLA1 1 +chrX 24812660 24812854 POLA1 1 +chrX 24815004 24815207 POLA1 1 +chrX 24821417 24821602 POLA1 1 +chrX 24826383 24826592 POLA1 1 +chrX 24841637 24841840 POLA1 1 +chrX 24843487 24843675 POLA1 1 +chrX 24887927 24888148 POLA1 1 +chrX 24930337 24930540 POLA1 1 +chrX 24995723 24996083 POLA1 1 +chrX 25004576 25004859 ARX 1 +chrX 25007019 25007385 ARX 1 +chrX 25010224 25010397 ARX 1 +chrX 25012878 25013801 ARX 1 +chrX 25015478 25015758 ARX 1 +chrX 26138983 26140134 MAGEB18 1 +chrX 26160606 26161016 Intergenic_2596 1 +chrX 26161074 26161576 Intergenic_2597 1 +chrX 26161646 26161825 Intergenic_2598 1 +chrX 26193810 26194140 MAGEB6 1 +chrX 26194180 26194801 MAGEB6 1 +chrX 26194892 26195180 MAGEB6 1 +chrX 26217222 26218210 MAGEB5 1 +chrX 26558838 26559029 VENTXP1 1 +chrX 27460852 27463381 PPP4R3C 1 +chrX 27746882 27748098 DCAF8L2 1 +chrX 27748168 27748747 DCAF8L2 1 +chrX 27821264 27822080 MAGEB10 1 +chrX 27822150 27822409 MAGEB10 1 +chrX 27979465 27980115 DCAF8L1 1 +chrX 27980265 27980385 DCAF8L1 1 +chrX 27980425 27981401 DCAF8L1 1 +chrX 28789300 28789497 IL1RAPL1 1 +chrX 29282886 29283142 IL1RAPL1 1 +chrX 29396220 29396417 IL1RAPL1 1 +chrX 29399134 29399325 IL1RAPL1 1 +chrX 29668381 29668566 IL1RAPL1 1 +chrX 29917399 29917587 IL1RAPL1 1 +chrX 29919906 29920091 IL1RAPL1 1 +chrX 29941628 29941819 IL1RAPL1 1 +chrX 29954491 29954673 IL1RAPL1 1 +chrX 29955028 29955874 IL1RAPL1 1 +chrX 30218615 30219360 MAGEB2 1 +chrX 30219427 30219615 MAGEB2 1 +chrX 30235870 30236707 MAGEB3 1 +chrX 30236771 30237042 MAGEB3 1 +chrX 30242190 30243273 MAGEB4 1 +chrX 30250490 30251650 MAGEB1 1 +chrX 30304450 30304780 NR0B1 1 +chrX 30305709 30305921 NR0B1 1 +chrX 30308219 30309465 NR0B1 1 +chrX 30559353 30560421 CXorf21 1 +chrX 30665572 30665692 GK 1 +chrX 30668116 30668236 GK 1 +chrX 30674149 30674379 GK 1 +chrX 30677417 30677537 GK 1 +chrX 30677884 30678087 GK 1 +chrX 30687409 30687621 GK 1 +chrX 30689399 30689596 GK 1 +chrX 30691209 30691329 GK 1 +chrX 30694508 30694628 GK 1 +chrX 30694992 30695219 GK 1 +chrX 30696127 30696247 GK 1 +chrX 30696651 30696863 GK 1 +chrX 30697643 30697837 GK 1 +chrX 30700274 30700483 GK 1 +chrX 30700905 30701025 GK 1 +chrX 30707551 30707751 GK 1 +chrX 30708145 30708265 GK 1 +chrX 30718601 30718721 GK 1 +chrX 30719497 30719617 GK 1 +chrX 30720080 30720200 GK 1 +chrX 30720729 30720849 GK 1 +chrX 30720919 30721095 GK 1 +chrX 30724189 30724309 GK 1 +chrX 30724508 30724714 GK 1 +chrX 30727536 30727656 GK 1 +chrX 30828151 30828496 TAB3 1 +chrX 30831327 30831536 TAB3 1 +chrX 30834076 30834276 TAB3 1 +chrX 30842982 30843164 TAB3 1 +chrX 30845829 30846047 TAB3 1 +chrX 30846413 30846643 TAB3 1 +chrX 30852697 30852882 TAB3 1 +chrX 30854041 30855503 TAB3 1 +chrX 30859445 30859660 TAB3 1 +chrX 31071266 31072032 FTHL17 1 +chrX 31114654 31114869 Intergenic_2599 1 +chrX 31121705 31121982 DMD 1 +chrX 31126556 31126738 DMD 1 +chrX 31134014 31134232 DMD 1 +chrX 31146249 31146464 DMD 1 +chrX 31147214 31147521 DMD 1 +chrX 31169352 31169546 DMD 1 +chrX 31172250 31172453 DMD 1 +chrX 31173474 31173659 DMD 1 +chrX 31177835 31178053 DMD 1 +chrX 31178710 31178907 DMD 1 +chrX 31180286 31180495 DMD 1 +chrX 31182699 31182902 DMD 1 +chrX 31203927 31204151 DMD 1 +chrX 31206554 31206748 DMD 1 +chrX 31209558 31209755 DMD 1 +chrX 31222983 31223177 DMD 1 +chrX 31260867 31261055 DMD 1 +chrX 31266719 31266919 DMD 1 +chrX 31323560 31323760 DMD 1 +chrX 31348494 31348703 DMD 1 +chrX 31444525 31444713 DMD 1 +chrX 31478174 31478442 DMD 1 +chrX 31478939 31479130 DMD 1 +chrX 31496714 31496893 DMD 1 +chrX 31507281 31507502 DMD 1 +chrX 31508182 31508394 DMD 1 +chrX 31627721 31627933 DMD 1 +chrX 31657990 31658196 DMD 1 +chrX 31679344 31679562 DMD 1 +chrX 31729616 31729816 DMD 1 +chrX 31773935 31774218 DMD 1 +chrX 31819925 31820131 DMD 1 +chrX 31836623 31836853 DMD 1 +chrX 31875180 31875380 DMD 1 +chrX 31929591 31929806 DMD 1 +chrX 31932050 31932238 DMD 1 +chrX 31968383 31968586 DMD 1 +chrX 32216883 32217089 DMD 1 +chrX 32287508 32287711 DMD 1 +chrX 32310045 32310248 DMD 1 +chrX 32342033 32342215 DMD 1 +chrX 32342666 32342928 DMD 1 +chrX 32343112 32343312 DMD 1 +chrX 32345926 32346111 DMD 1 +chrX 32348363 32348551 DMD 1 +chrX 32362844 32363029 DMD 1 +chrX 32364551 32364748 DMD 1 +chrX 32364958 32365134 DMD 1 +chrX 32380476 32380655 DMD 1 +chrX 32386263 32386451 DMD 1 +chrX 32389427 32389627 DMD 1 +chrX 32390034 32390222 DMD 1 +chrX 32411704 32412236 DMD 1 +chrX 32438212 32438412 DMD 1 +chrX 32441116 32441319 DMD 1 +chrX 32448416 32448616 DMD 1 +chrX 32454688 32454879 DMD 1 +chrX 32463413 32463610 DMD 1 +chrX 32464572 32464787 DMD 1 +chrX 32468488 32468703 DMD 1 +chrX 32472121 32472348 DMD 1 +chrX 32484884 32485087 DMD 1 +chrX 32491245 32491552 DMD 1 +chrX 32501692 32501904 DMD 1 +chrX 32517894 32518159 DMD 1 +chrX 32545095 32545286 DMD 1 +chrX 32565655 32565876 DMD 1 +chrX 32573528 32573906 DMD 1 +chrX 32583657 32583878 DMD 1 +chrX 32595722 32595901 DMD 1 +chrX 32614205 32614420 DMD 1 +chrX 32641482 32641664 DMD 1 +chrX 32644137 32644307 DMD 1 +chrX 32644954 32645163 DMD 1 +chrX 32697773 32697973 DMD 1 +chrX 32699102 32699317 DMD 1 +chrX 32809445 32809660 DMD 1 +chrX 32816423 32816632 DMD 1 +chrX 32823249 32823440 DMD 1 +chrX 32844772 32844978 DMD 1 +chrX 32849658 32849876 DMD 1 +chrX 33020006 33020194 DMD 1 +chrX 33128093 33128284 DMD 1 +chrX 33211220 33211512 DMD 1 +chrX 33339231 33339419 DMD 1 +chrX 34129828 34129998 FAM47A 1 +chrX 34130148 34130718 FAM47A 1 +chrX 34130785 34131527 FAM47A 1 +chrX 34131588 34131838 FAM47A 1 +chrX 34132044 34132318 FAM47A 1 +chrX 34630244 34630512 TMEM47 1 +chrX 34639204 34639422 TMEM47 1 +chrX 34656856 34657127 TMEM47 1 +chrX 34942751 34942871 FAM47B 1 +chrX 34943302 34943490 FAM47B 1 +chrX 34943800 34944053 FAM47B 1 +chrX 34944280 34944530 FAM47B 1 +chrX 34944597 34944717 FAM47B 1 +chrX 35800388 35800576 MAGEB16 1 +chrX 35802097 35803275 MAGEB16 1 +chrX 35919741 35920101 CFAP47 1 +chrX 35925974 35926150 CFAP47 1 +chrX 35941186 35941380 CFAP47 1 +chrX 35948252 35948446 CFAP47 1 +chrX 35951134 35951423 CFAP47 1 +chrX 35951797 35951970 CFAP47 1 +chrX 35953525 35953716 CFAP47 1 +chrX 35955917 35956194 CFAP47 1 +chrX 35966589 35966786 CFAP47 1 +chrX 35967580 35967768 CFAP47 1 +chrX 35970820 35971005 CFAP47 1 +chrX 35971564 35971995 CFAP47 1 +chrX 35975144 35975418 CFAP47 1 +chrX 35975655 35975926 CFAP47 1 +chrX 35985876 35986076 CFAP47 1 +chrX 35989263 35989596 CFAP47 1 +chrX 36038981 36039181 CFAP47 1 +chrX 36046838 36047029 CFAP47 1 +chrX 36065560 36065760 CFAP47 1 +chrX 36071794 36071985 CFAP47 1 +chrX 36073141 36073418 CFAP47 1 +chrX 36085327 36085586 CFAP47 1 +chrX 36098790 36098981 CFAP47 1 +chrX 36099750 36099938 CFAP47 1 +chrX 36104449 36104622 CFAP47 1 +chrX 36137921 36138091 CFAP47 1 +chrX 36138311 36138493 CFAP47 1 +chrX 36144506 36144842 CFAP47 1 +chrX 36228623 36228820 CFAP47 1 +chrX 36235920 36236105 CFAP47 1 +chrX 36236675 36236866 CFAP47 1 +chrX 36251315 36251518 CFAP47 1 +chrX 36280458 36280667 CFAP47 1 +chrX 36285622 36285798 CFAP47 1 +chrX 36298964 36299176 CFAP47 1 +chrX 36300995 36301183 CFAP47 1 +chrX 36303840 36304034 CFAP47 1 +chrX 36306726 36306911 CFAP47 1 +chrX 36310807 36310995 CFAP47 1 +chrX 36319139 36319318 CFAP47 1 +chrX 36348051 36348248 CFAP47 1 +chrX 36350014 36350223 CFAP47 1 +chrX 36353453 36353647 CFAP47 1 +chrX 36361292 36361495 CFAP47 1 +chrX 36366931 36367113 CFAP47 1 +chrX 36379296 36379659 CFAP47 1 +chrX 36384735 36385012 CFAP47 1 +chrX 36985694 36985882 Intergenic_2600 1 +chrX 37008356 37008476 FAM47C 1 +chrX 37008848 37009036 FAM47C 1 +chrX 37009186 37009362 FAM47C 1 +chrX 37009497 37009756 FAM47C 1 +chrX 37011026 37011276 FAM47C 1 +chrX 37406065 37406289 PRRG1 1 +chrX 37425768 37425962 PRRG1 1 +chrX 37440722 37440842 PRRG1 1 +chrX 37453096 37453681 PRRG1 1 +chrX 37571935 37572271 LANCL3 1 +chrX 37572421 37572541 LANCL3 1 +chrX 37655610 37655825 LANCL3 1 +chrX 37659391 37659588 LANCL3 1 +chrX 37667219 37667410 LANCL3 1 +chrX 37668352 37668525 LANCL3 1 +chrX 37675623 37675915 LANCL3 1 +chrX 37685832 37686278 XK 1 +chrX 37694216 37694484 XK 1 +chrX 37727618 37728544 XK 1 +chrX 37779952 37780155 CYBB 1 +chrX 37782044 37782220 CYBB 1 +chrX 37783519 37783695 CYBB 1 +chrX 37791913 37792116 CYBB 1 +chrX 37793601 37793819 CYBB 1 +chrX 37796005 37796190 CYBB 1 +chrX 37798937 37799143 CYBB 1 +chrX 37801216 37801431 CYBB 1 +chrX 37803854 37804149 CYBB 1 +chrX 37805061 37805243 CYBB 1 +chrX 37806287 37806484 CYBB 1 +chrX 37809516 37809719 CYBB 1 +chrX 37810859 37811044 CYBB 1 +chrX 37840402 37840599 DYNLT3 1 +chrX 37840996 37841193 DYNLT3 1 +chrX 37841818 37841997 DYNLT3 1 +chrX 37846258 37846461 DYNLT3 1 +chrX 37847108 37847228 DYNLT3 1 +chrX 37847351 37847714 DYNLT3 1 +chrX 37990794 37991252 HYPM 1 +chrX 38023968 38024088 SYTL5 1 +chrX 38033771 38033968 SYTL5 1 +chrX 38054160 38054342 SYTL5 1 +chrX 38072010 38072207 SYTL5 1 +chrX 38073486 38073668 SYTL5 1 +chrX 38076548 38076766 SYTL5 1 +chrX 38089347 38089544 SYTL5 1 +chrX 38094262 38094474 SYTL5 1 +chrX 38096071 38096286 SYTL5 1 +chrX 38102293 38102487 SYTL5 1 +chrX 38102952 38103170 SYTL5 1 +chrX 38106641 38106841 SYTL5 1 +chrX 38108558 38108749 SYTL5 1 +chrX 38110376 38110555 SYTL5 1 +chrX 38120302 38120511 SYTL5 1 +chrX 38122038 38122241 SYTL5 1 +chrX 38125238 38125438 SYTL5 1 +chrX 38126602 38126799 SYTL5 1 +chrX 38149610 38149875 SRPX 1 +chrX 38154350 38154553 SRPX 1 +chrX 38156922 38157137 SRPX 1 +chrX 38160081 38160269 SRPX 1 +chrX 38160848 38161024 SRPX 1 +chrX 38164719 38164937 SRPX 1 +chrX 38171943 38172113 SRPX 1 +chrX 38174173 38174391 SRPX 1 +chrX 38178259 38178468 SRPX 1 +chrX 38220759 38220879 SRPX 1 +chrX 38221355 38221534 Intergenic_2601 1 +chrX 38269565 38269925 RPGR 1 +chrX 38273376 38273600 RPGR 1 +chrX 38275077 38275292 RPGR 1 +chrX 38276519 38276716 RPGR 1 +chrX 38279133 38279354 RPGR 1 +chrX 38285424 38286000 RPGR 1 +chrX 38286372 38288015 RPGR 1 +chrX 38290819 38291028 RPGR 1 +chrX 38291380 38291565 RPGR 1 +chrX 38297309 38297488 RPGR 1 +chrX 38298324 38298506 RPGR 1 +chrX 38298978 38299178 RPGR 1 +chrX 38301223 38301396 RPGR 1 +chrX 38304675 38304887 RPGR 1 +chrX 38310668 38310838 RPGR 1 +chrX 38317287 38317487 RPGR 1 +chrX 38318813 38319010 RPGR 1 +chrX 38320924 38321115 RPGR 1 +chrX 38322810 38322983 RPGR 1 +chrX 38323436 38323636 RPGR 1 +chrX 38327331 38327540 RPGR 1 +chrX 38352591 38352859 OTC 1 +chrX 38367226 38367435 OTC 1 +chrX 38369772 38369951 OTC 1 +chrX 38381315 38381500 OTC 1 +chrX 38401239 38401463 OTC 1 +chrX 38403533 38403709 OTC 1 +chrX 38408716 38408984 OTC 1 +chrX 38411824 38412039 OTC 1 +chrX 38420967 38421235 OTC 1 +chrX 38561428 38561699 TSPAN7 1 +chrX 38562959 38563147 TSPAN7 1 +chrX 38566253 38566438 TSPAN7 1 +chrX 38622790 38623002 TSPAN7 1 +chrX 38646246 38646455 TSPAN7 1 +chrX 38655925 38656122 TSPAN7 1 +chrX 38666159 38666356 TSPAN7 1 +chrX 38671267 38671467 TSPAN7 1 +chrX 38674108 38674308 TSPAN7 1 +chrX 38675616 38675810 TSPAN7 1 +chrX 38681079 38681282 TSPAN7 1 +chrX 38687520 38687741 TSPAN7 1 +chrX 38804812 38805634 MID1IP1 1 +chrX 39661108 39661293 MIR3937 1 +chrX 39837462 39837644 Intergenic_2602 1 +chrX 40049802 40050011 Intergenic_2603 1 +chrX 40052014 40052448 BCOR 1 +chrX 40053858 40054058 BCOR 1 +chrX 40054269 40054454 BCOR 1 +chrX 40055325 40055498 BCOR 1 +chrX 40057191 40057397 BCOR 1 +chrX 40062185 40062453 BCOR 1 +chrX 40062653 40063043 BCOR 1 +chrX 40063643 40064009 BCOR 1 +chrX 40064354 40064634 BCOR 1 +chrX 40071022 40071225 BCOR 1 +chrX 40071536 40071739 BCOR 1 +chrX 40072297 40075161 BCOR 1 +chrX 40076341 40076541 BCOR 1 +chrX 40077874 40078062 BCOR 1 +chrX 40580830 40581033 ATP6AP2 1 +chrX 40588881 40589075 ATP6AP2 1 +chrX 40591274 40591450 ATP6AP2 1 +chrX 40597236 40597688 ATP6AP2 1 +chrX 40598682 40598852 ATP6AP2 1 +chrX 40599641 40599823 ATP6AP2 1 +chrX 40600796 40600981 ATP6AP2 1 +chrX 40605712 40605832 ATP6AP2 1 +chrX 40623502 40623918 MPC1L 1 +chrX 40630488 40630863 CXorf38 1 +chrX 40636459 40636677 CXorf38 1 +chrX 40636945 40637136 CXorf38 1 +chrX 40638955 40639238 CXorf38 1 +chrX 40646990 40647560 CXorf38 1 +chrX 40649508 40649868 MED14 1 +chrX 40651659 40651945 MED14 1 +chrX 40654307 40654584 MED14 1 +chrX 40654846 40655046 MED14 1 +chrX 40659199 40659636 MED14 1 +chrX 40662896 40663197 MED14 1 +chrX 40664237 40664422 MED14 1 +chrX 40666757 40666939 MED14 1 +chrX 40671750 40671941 MED14 1 +chrX 40675160 40675369 MED14 1 +chrX 40679885 40680183 MED14 1 +chrX 40680748 40680918 MED14 1 +chrX 40681773 40681970 MED14 1 +chrX 40682576 40683025 MED14 1 +chrX 40688352 40688567 MED14 1 +chrX 40692119 40692319 MED14 1 +chrX 40692662 40692862 MED14 1 +chrX 40697069 40697251 MED14 1 +chrX 40701028 40701249 MED14 1 +chrX 40703433 40703621 MED14 1 +chrX 40709315 40709494 MED14 1 +chrX 40709932 40710123 MED14 1 +chrX 40711104 40711319 MED14 1 +chrX 40712157 40712366 MED14 1 +chrX 40712880 40713089 MED14 1 +chrX 40713724 40713906 MED14 1 +chrX 40714598 40714768 MED14 1 +chrX 40726713 40726883 MED14 1 +chrX 40729186 40729356 MED14 1 +chrX 40735165 40735777 MED14 1 +chrX 40738119 40738319 MED14OS 1 +chrX 41123478 41123672 USP9X 1 +chrX 41129044 41129220 USP9X 1 +chrX 41131471 41131665 USP9X 1 +chrX 41134614 41134805 USP9X 1 +chrX 41136847 41137127 USP9X 1 +chrX 41140688 41140876 USP9X 1 +chrX 41140929 41141455 USP9X 1 +chrX 41143323 41143535 USP9X 1 +chrX 41144533 41144745 USP9X 1 +chrX 41148446 41148646 USP9X 1 +chrX 41150960 41151151 USP9X 1 +chrX 41152941 41153144 USP9X 1 +chrX 41162706 41162906 USP9X 1 +chrX 41165907 41166279 USP9X 1 +chrX 41167441 41167635 USP9X 1 +chrX 41168024 41168200 USP9X 1 +chrX 41170043 41170299 USP9X 1 +chrX 41170459 41170686 USP9X 1 +chrX 41171559 41171913 USP9X 1 +chrX 41183974 41184162 USP9X 1 +chrX 41184470 41184735 USP9X 1 +chrX 41186554 41186730 USP9X 1 +chrX 41188017 41188202 USP9X 1 +chrX 41189357 41189554 USP9X 1 +chrX 41195821 41196024 USP9X 1 +chrX 41196279 41196458 USP9X 1 +chrX 41196489 41196701 USP9X 1 +chrX 41197291 41197470 USP9X 1 +chrX 41198453 41198712 USP9X 1 +chrX 41201104 41201372 USP9X 1 +chrX 41205234 41205434 USP9X 1 +chrX 41210429 41210620 USP9X 1 +chrX 41214487 41214666 USP9X 1 +chrX 41215970 41216727 USP9X 1 +chrX 41217244 41217432 USP9X 1 +chrX 41218389 41218681 USP9X 1 +chrX 41219006 41219209 USP9X 1 +chrX 41223245 41223424 USP9X 1 +chrX 41224782 41225231 USP9X 1 +chrX 41229269 41229872 USP9X 1 +chrX 41230469 41230678 USP9X 1 +chrX 41232421 41232618 USP9X 1 +chrX 41334061 41334323 DDX3X 1 +chrX 41334592 41334789 DDX3X 1 +chrX 41337318 41337515 DDX3X 1 +chrX 41339025 41339222 DDX3X 1 +chrX 41341512 41341703 DDX3X 1 +chrX 41342500 41342890 DDX3X 1 +chrX 41343237 41343455 DDX3X 1 +chrX 41343682 41343864 DDX3X 1 +chrX 41343971 41344307 DDX3X 1 +chrX 41345228 41345588 DDX3X 1 +chrX 41346277 41346702 DDX3X 1 +chrX 41346980 41347100 DDX3X 1 +chrX 41347236 41347406 DDX3X 1 +chrX 41347680 41347871 DDX3X 1 +chrX 41447720 41448006 NYX 1 +chrX 41473534 41474996 NYX 1 +chrX 41520356 41520574 CASK 1 +chrX 41523877 41524047 CASK 1 +chrX 41531067 41531264 CASK 1 +chrX 41534650 41534930 CASK 1 +chrX 41542633 41542845 CASK 1 +chrX 41553710 41553913 CASK 1 +chrX 41555499 41555675 CASK 1 +chrX 41556989 41557204 CASK 1 +chrX 41559622 41559819 CASK 1 +chrX 41561531 41561716 CASK 1 +chrX 41569543 41569731 CASK 1 +chrX 41578303 41578506 CASK 1 +chrX 41586801 41586983 CASK 1 +chrX 41589442 41589740 CASK 1 +chrX 41609882 41610103 CASK 1 +chrX 41622525 41622710 CASK 1 +chrX 41624099 41624311 CASK 1 +chrX 41626523 41626735 CASK 1 +chrX 41636528 41636716 CASK 1 +chrX 41660423 41660626 CASK 1 +chrX 41665279 41665494 CASK 1 +chrX 41671303 41671512 CASK 1 +chrX 41695529 41696834 CASK 1 +chrX 41726935 41728098 CASK 1 +chrX 41739364 41739594 CASK 1 +chrX 41745477 41745656 CASK 1 +chrX 41787166 41787360 CASK 1 +chrX 41853025 41853246 CASK 1 +chrX 41922878 41923143 CASK 1 +chrX 42777441 42778041 PPP1R2C 1 +chrX 43656262 43656432 MAOA 1 +chrX 43683486 43683686 MAOA 1 +chrX 43693274 43693492 MAOA 1 +chrX 43711853 43712062 MAOA 1 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44178380 44178574 EFHC2 1 +chrX 44229604 44229810 EFHC2 1 +chrX 44232424 44232615 EFHC2 1 +chrX 44235284 44235487 EFHC2 1 +chrX 44242125 44242319 EFHC2 1 +chrX 44248301 44248495 EFHC2 1 +chrX 44248739 44248951 EFHC2 1 +chrX 44250110 44250384 EFHC2 1 +chrX 44261070 44261344 EFHC2 1 +chrX 44272636 44272827 EFHC2 1 +chrX 44312528 44312716 EFHC2 1 +chrX 44343488 44343667 EFHC2 1 +chrX 44524055 44524282 FUNDC1 1 +chrX 44527266 44527460 FUNDC1 1 +chrX 44538479 44538679 FUNDC1 1 +chrX 44541865 44542047 FUNDC1 1 +chrX 44542876 44542996 FUNDC1 1 +chrX 44844022 44844788 DUSP21 1 +chrX 44873548 44873730 KDM6A 1 +chrX 44873837 44874013 KDM6A 1 +chrX 44961312 44961497 KDM6A 1 +chrX 44974560 44974772 KDM6A 1 +chrX 45010961 45011134 KDM6A 1 +chrX 45020644 45020823 KDM6A 1 +chrX 45034923 45035120 KDM6A 1 +chrX 45037571 45037759 KDM6A 1 +chrX 45051682 45051885 KDM6A 1 +chrX 45053866 45054048 KDM6A 1 +chrX 45059050 45059552 KDM6A 1 +chrX 45060143 45060263 KDM6A 1 +chrX 45060523 45060714 KDM6A 1 +chrX 45061286 45061459 KDM6A 1 +chrX 45062546 45062752 KDM6A 1 +chrX 45063339 45063770 KDM6A 1 +chrX 45069532 45070393 KDM6A 1 +chrX 45076586 45076786 KDM6A 1 +chrX 45078427 45078597 KDM6A 1 +chrX 45079223 45079423 KDM6A 1 +chrX 45082654 45082842 KDM6A 1 +chrX 45083466 45083651 KDM6A 1 +chrX 45085773 45085946 KDM6A 1 +chrX 45089811 45090011 KDM6A 1 +chrX 45090747 45090953 KDM6A 1 +chrX 45106507 45106683 KDM6A 1 +chrX 45107339 45107551 KDM6A 1 +chrX 45110138 45110323 KDM6A 1 +chrX 45111367 45111558 KDM6A 1 +chrX 45151551 45152065 CXorf36 1 +chrX 45153898 45154148 CXorf36 1 +chrX 45157625 45157825 CXorf36 1 +chrX 45164025 45164290 CXorf36 1 +chrX 45191787 45192046 CXorf36 1 +chrX 45200521 45200851 CXorf36 1 +chrX 45746177 45746359 MIR221 1 +chrX 45747017 45747241 MIR222 1 +chrX 46450308 46450493 KRBOX4 1 +chrX 46462495 46462615 KRBOX4 1 +chrX 46462635 46462755 KRBOX4 1 +chrX 46463107 46463227 KRBOX4 1 +chrX 46463288 46463408 KRBOX4 1 +chrX 46471102 46471293 KRBOX4 1 +chrX 46472738 46473068 KRBOX4 1 +chrX 46497031 46497296 Intergenic_2604 1 +chrX 46499798 46500715 ZNF674 1 +chrX 46501025 46501275 ZNF674 1 +chrX 46522986 46523186 ZNF674 1 +chrX 46525215 46525335 ZNF674 1 +chrX 46528361 46528534 ZNF674 1 +chrX 46528900 46529020 ZNF674 1 +chrX 46542015 46542218 ZNF674 1 +chrX 46573845 46575402 CHST7 1 +chrX 46606836 46607261 SLC9A7 1 +chrX 46613313 46613501 SLC9A7 1 +chrX 46620992 46621174 SLC9A7 1 +chrX 46631592 46631789 SLC9A7 1 +chrX 46635452 46635649 SLC9A7 1 +chrX 46643266 46643487 SLC9A7 1 +chrX 46648716 46648904 SLC9A7 1 +chrX 46651041 46651321 SLC9A7 1 +chrX 46653640 46653840 SLC9A7 1 +chrX 46662062 46662235 SLC9A7 1 +chrX 46662559 46662756 SLC9A7 1 +chrX 46669637 46669813 SLC9A7 1 +chrX 46672425 46672628 SLC9A7 1 +chrX 46679691 46679870 SLC9A7 1 +chrX 46682287 46682484 SLC9A7 1 +chrX 46758773 46759118 SLC9A7 1 +chrX 46836946 46837220 RP2 1 +chrX 46853423 46854133 RP2 1 +chrX 46859965 46860159 RP2 1 +chrX 46877414 46877611 RP2 1 +chrX 46879665 46879918 RP2 1 +chrX 46887426 46887700 LINC01545 1 +chrX 46890295 46890510 LINC01545 1 +chrX 46894491 46894682 LINC01545 1 +chrX 46984830 46985042 JADE3 1 +chrX 46985706 46985906 JADE3 1 +chrX 46998038 46998226 JADE3 1 +chrX 47024655 47024846 JADE3 1 +chrX 47027843 47028031 JADE3 1 +chrX 47033679 47033879 JADE3 1 +chrX 47038849 47039046 JADE3 1 +chrX 47054057 47054589 JADE3 1 +chrX 47056004 47056213 JADE3 1 +chrX 47058152 47059173 JADE3 1 +chrX 47081059 47081262 RGN 1 +chrX 47084459 47084665 RGN 1 +chrX 47089815 47090098 RGN 1 +chrX 47091583 47091771 RGN 1 +chrX 47092037 47092240 RGN 1 +chrX 47092841 47093118 RGN 1 +chrX 47142286 47142800 NDUFB11 1 +chrX 47144381 47144833 NDUFB11 1 +chrX 47145267 47145470 RBM10 1 +chrX 47147400 47147585 RBM10 1 +chrX 47169264 47169482 RBM10 1 +chrX 47170927 47171231 RBM10 1 +chrX 47173095 47173289 RBM10 1 +chrX 47174970 47175167 RBM10 1 +chrX 47176472 47176672 RBM10 1 +chrX 47179132 47179590 RBM10 1 +chrX 47179804 47180478 RBM10 1 +chrX 47181262 47182404 RBM10 1 +chrX 47185012 47185787 RBM10 1 +chrX 47186126 47186702 RBM10 1 +chrX 47198121 47198428 UBA1 1 +chrX 47198818 47199673 UBA1 1 +chrX 47200786 47200980 UBA1 1 +chrX 47201280 47201655 UBA1 1 +chrX 47202147 47203224 UBA1 1 +chrX 47203476 47203676 UBA1 1 +chrX 47205315 47205568 UBA1 1 +chrX 47205851 47206463 UBA1 1 +chrX 47209420 47209765 UBA1 1 +chrX 47209850 47210053 UBA1 1 +chrX 47210738 47211193 UBA1 1 +chrX 47212307 47212507 UBA1 1 +chrX 47212695 47213150 UBA1 1 +chrX 47214312 47214977 UBA1 1 +chrX 47218503 47218623 CDK16 1 +chrX 47223091 47223306 CDK16 1 +chrX 47223483 47223686 CDK16 1 +chrX 47224375 47225123 CDK16 1 +chrX 47225706 47227432 CDK16 1 +chrX 47228513 47229095 CDK16 1 +chrX 47229245 47229590 CDK16 1 +chrX 47232801 47233143 USP11 1 +chrX 47238980 47239429 USP11 1 +chrX 47239775 47239975 USP11 1 +chrX 47240221 47240815 USP11 1 +chrX 47241201 47241650 USP11 1 +chrX 47242066 47242725 USP11 1 +chrX 47243407 47243607 USP11 1 +chrX 47244419 47245034 USP11 1 +chrX 47245340 47245522 USP11 1 +chrX 47247008 47247380 USP11 1 +chrX 47247648 47248023 USP11 1 +chrX 47370580 47370792 ZNF157 1 +chrX 47410178 47410366 ZNF157 1 +chrX 47410702 47410887 ZNF157 1 +chrX 47412295 47413695 ZNF157 1 +chrX 47447342 47448312 ZNF41 1 +chrX 47448364 47449527 ZNF41 1 +chrX 47455922 47456116 ZNF41 1 +chrX 47456313 47456519 ZNF41 1 +chrX 47467366 47467581 ZNF41 1 +chrX 47483497 47483958 LINC01560 1 +chrX 47513494 47513613 Intergenic_2605 1 +chrX 47562854 47563324 ARAF 1 +chrX 47564778 47565470 ARAF 1 +chrX 47566669 47567524 ARAF 1 +chrX 47568743 47569118 ARAF 1 +chrX 47569434 47569622 ARAF 1 +chrX 47569798 47569983 ARAF 1 +chrX 47570916 47571095 ARAF 1 +chrX 47571348 47571566 ARAF 1 +chrX 47572788 47573080 SYN1 1 +chrX 47574065 47574843 SYN1 1 +chrX 47575172 47575345 SYN1 1 +chrX 47576125 47576639 SYN1 1 +chrX 47577309 47577494 SYN1 1 +chrX 47582521 47582724 SYN1 1 +chrX 47583438 47583629 SYN1 1 +chrX 47584812 47585000 SYN1 1 +chrX 47585249 47586083 SYN1 1 +chrX 47586564 47586779 SYN1 1 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SLC38A5 1 +chrX 48462020 48462285 SLC38A5 1 +chrX 48462763 48462978 SLC38A5 1 +chrX 48465963 48466320 SLC38A5 1 +chrX 48466774 48467140 SLC38A5 1 +chrX 48467767 48467982 SLC38A5 1 +chrX 48477929 48478147 FTSJ1 1 +chrX 48478497 48478786 FTSJ1 1 +chrX 48479015 48479215 FTSJ1 1 +chrX 48481063 48481678 FTSJ1 1 +chrX 48482436 48483098 FTSJ1 1 +chrX 48509471 48509964 PORCN 1 +chrX 48511335 48511532 PORCN 1 +chrX 48511753 48511956 PORCN 1 +chrX 48512391 48512899 PORCN 1 +chrX 48514184 48514695 PORCN 1 +chrX 48515783 48516220 PORCN 1 +chrX 48517143 48517322 PORCN 1 +chrX 48520427 48520547 PORCN 1 +chrX 48523661 48524012 EBP 1 +chrX 48526890 48527241 EBP 1 +chrX 48528282 48528559 EBP 1 +chrX 48539706 48539894 TBC1D25 1 +chrX 48541318 48541598 TBC1D25 1 +chrX 48544851 48545036 TBC1D25 1 +chrX 48558850 48559284 TBC1D25 1 +chrX 48559640 48561055 TBC1D25 1 +chrX 48574477 48574944 RBM3 1 +chrX 48575049 48575338 RBM3 1 +chrX 48575611 48575977 RBM3 1 +chrX 48576067 48576682 RBM3 1 +chrX 48576967 48577247 RBM3 1 +chrX 48597838 48598026 WDR13 1 +chrX 48598741 48599027 WDR13 1 +chrX 48599417 48599780 WDR13 1 +chrX 48600257 48600712 WDR13 1 +chrX 48601771 48602205 WDR13 1 +chrX 48604161 48604364 WDR13 1 +chrX 48604908 48605114 WDR13 1 +chrX 48683728 48683919 WAS 1 +chrX 48684300 48684509 WAS 1 +chrX 48685573 48686170 WAS 1 +chrX 48686815 48687012 WAS 1 +chrX 48687911 48688108 WAS 1 +chrX 48688216 48688404 WAS 1 +chrX 48688603 48689067 WAS 1 +chrX 48689333 48689551 WAS 1 +chrX 48691130 48691250 WAS 1 +chrX 48695802 48696002 SUV39H1 1 +chrX 48696674 48696850 SUV39H1 1 +chrX 48698919 48699104 SUV39H1 1 +chrX 48700015 48700698 SUV39H1 1 +chrX 48700911 48701087 SUV39H1 1 +chrX 48701718 48701915 SUV39H1 1 +chrX 48705472 48705690 SUV39H1 1 +chrX 48706298 48706640 SUV39H1 1 +chrX 48707506 48707928 SUV39H1 1 +chrX 48761796 48761996 GLOD5 1 +chrX 48765715 48766063 GLOD5 1 +chrX 48770952 48771173 GLOD5 1 +chrX 48773354 48773554 GLOD5 1 +chrX 48775950 48776070 Intergenic_2616 1 +chrX 48791133 48791425 GATA1 1 +chrX 48791758 48792450 GATA1 1 +chrX 48793065 48793268 GATA1 1 +chrX 48793841 48794385 GATA1 1 +chrX 48801835 48802032 HDAC6 1 +chrX 48802618 48803295 HDAC6 1 +chrX 48805475 48805755 HDAC6 1 +chrX 48806299 48806662 HDAC6 1 +chrX 48807970 48808274 HDAC6 1 +chrX 48814385 48814979 HDAC6 1 +chrX 48815227 48815602 HDAC6 1 +chrX 48815799 48816227 HDAC6 1 +chrX 48816433 48816612 HDAC6 1 +chrX 48817247 48817420 HDAC6 1 +chrX 48818001 48818343 HDAC6 1 +chrX 48819838 48820278 HDAC6 1 +chrX 48822536 48824271 HDAC6 1 +chrX 48824607 48825053 HDAC6 1 +chrX 48829022 48829957 ERAS 1 +chrX 48831207 48831383 PCSK1N 1 +chrX 48831889 48832439 PCSK1N 1 +chrX 48835364 48835573 PCSK1N 1 +chrX 48893621 48894328 TIMM17B 1 +chrX 48894903 48895115 TIMM17B 1 +chrX 48895296 48895511 TIMM17B 1 +chrX 48896783 48896980 TIMM17B 1 +chrX 48897737 48897940 PQBP1 1 +chrX 48898292 48898563 PQBP1 1 +chrX 48901082 48901273 PQBP1 1 +chrX 48901403 48901523 PQBP1 1 +chrX 48901930 48902121 PQBP1 1 +chrX 48902300 48903152 PQBP1 1 +chrX 48903257 48903632 SLC35A2 1 +chrX 48904528 48905534 SLC35A2 1 +chrX 48906231 48906526 SLC35A2 1 +chrX 48909738 48909938 SLC35A2 1 +chrX 48910250 48910435 SLC35A2 1 +chrX 48911578 48912024 SLC35A2 1 +chrX 48914071 48914529 PIM2 1 +chrX 48914951 48915465 PIM2 1 +chrX 48917651 48917833 PIM2 1 +chrX 48918458 48918969 PIM2 1 +chrX 48923040 48923326 OTUD5 1 +chrX 48923559 48923993 OTUD5 1 +chrX 48925920 48926093 OTUD5 1 +chrX 48934365 48934977 OTUD5 1 +chrX 48940065 48940410 OTUD5 1 +chrX 48944076 48944285 OTUD5 1 +chrX 48956959 48957651 OTUD5 1 +chrX 48962436 48962802 KCND1 1 +chrX 48966102 48966394 KCND1 1 +chrX 48966610 48967198 KCND1 1 +chrX 48969168 48970340 KCND1 1 +chrX 48974027 48974307 GRIPAP1 1 +chrX 48975077 48975265 GRIPAP1 1 +chrX 48976007 48976373 GRIPAP1 1 +chrX 48978145 48978523 GRIPAP1 1 +chrX 48981263 48981949 GRIPAP1 1 +chrX 48982940 48983481 GRIPAP1 1 +chrX 48983785 48983991 GRIPAP1 1 +chrX 48985291 48985491 GRIPAP1 1 +chrX 48987667 48987876 GRIPAP1 1 +chrX 48988110 48988334 GRIPAP1 1 +chrX 48989604 48990056 GRIPAP1 1 +chrX 48990548 48990742 GRIPAP1 1 +chrX 48990858 48991236 GRIPAP1 1 +chrX 48993477 48993677 GRIPAP1 1 +chrX 48997227 48997442 GRIPAP1 1 +chrX 48998000 48998194 GRIPAP1 1 +chrX 48999170 48999462 GRIPAP1 1 +chrX 49002187 49002399 GRIPAP1 1 +chrX 49029549 49030546 TFE3 1 +chrX 49031298 49031495 TFE3 1 +chrX 49033471 49033656 TFE3 1 +chrX 49033722 49033928 TFE3 1 +chrX 49034020 49034235 TFE3 1 +chrX 49037951 49038385 TFE3 1 +chrX 49039138 49039504 TFE3 1 +chrX 49040417 49040617 TFE3 1 +chrX 49043108 49043308 TFE3 1 +chrX 49061965 49062565 CCDC120 1 +chrX 49063788 49064012 CCDC120 1 +chrX 49064439 49064728 CCDC120 1 +chrX 49065041 49065238 CCDC120 1 +chrX 49065489 49065929 CCDC120 1 +chrX 49067081 49068253 CCDC120 1 +chrX 49068441 49068813 CCDC120 1 +chrX 49071740 49072115 PRAF2 1 +chrX 49072214 49072574 PRAF2 1 +chrX 49073830 49074113 PRAF2 1 +chrX 49074646 49074997 WDR45 1 +chrX 49075210 49076050 WDR45 1 +chrX 49076481 49076912 WDR45 1 +chrX 49077445 49078039 WDR45 1 +chrX 49100520 49100750 WDR45 1 +chrX 49113535 49113892 GPKOW 1 +chrX 49115675 49115937 GPKOW 1 +chrX 49116228 49116428 GPKOW 1 +chrX 49117067 49117255 GPKOW 1 +chrX 49117666 49117878 GPKOW 1 +chrX 49119734 49119910 GPKOW 1 +chrX 49122441 49122866 GPKOW 1 +chrX 49123562 49123827 GPKOW 1 +chrX 49157298 49157525 MAGIX 1 +chrX 49163759 49164042 MAGIX 1 +chrX 49164626 49165315 MAGIX 1 +chrX 49165983 49166503 MAGIX 1 +chrX 49171980 49172168 PLP2 1 +chrX 49173041 49173659 PLP2 1 +chrX 49174261 49174450 PLP2 1 +chrX 49174612 49174886 PLP2 1 +chrX 49175572 49176243 PRICKLE3 1 +chrX 49176812 49177187 PRICKLE3 1 +chrX 49178035 49178555 PRICKLE3 1 +chrX 49179285 49179494 PRICKLE3 1 +chrX 49179513 49179903 PRICKLE3 1 +chrX 49183500 49183886 PRICKLE3 1 +chrX 49184554 49184846 PRICKLE3 1 +chrX 49186147 49186359 PRICKLE3 1 +chrX 49191384 49191827 SYP 1 +chrX 49193276 49193467 SYP 1 +chrX 49194175 49194357 SYP 1 +chrX 49197646 49197917 SYP 1 +chrX 49198960 49199160 SYP 1 +chrX 49200073 49200267 SYP 1 +chrX 49205101 49205467 CACNA1F 1 +chrX 49205665 49205877 CACNA1F 1 +chrX 49206559 49207156 CACNA1F 1 +chrX 49208427 49208805 CACNA1F 1 +chrX 49209088 49209338 CACNA1F 1 +chrX 49209621 49210052 CACNA1F 1 +chrX 49210305 49210502 CACNA1F 1 +chrX 49210612 49210782 CACNA1F 1 +chrX 49210973 49211155 CACNA1F 1 +chrX 49211334 49211546 CACNA1F 1 +chrX 49211888 49212115 CACNA1F 1 +chrX 49212175 49212378 CACNA1F 1 +chrX 49212578 49212947 CACNA1F 1 +chrX 49213799 49213975 CACNA1F 1 +chrX 49214155 49214334 CACNA1F 1 +chrX 49215024 49215538 CACNA1F 1 +chrX 49216348 49216554 CACNA1F 1 +chrX 49217664 49217944 CACNA1F 1 +chrX 49218497 49219002 CACNA1F 1 +chrX 49219229 49219740 CACNA1F 1 +chrX 49220461 49220643 CACNA1F 1 +chrX 49220927 49221142 CACNA1F 1 +chrX 49222549 49223155 CACNA1F 1 +chrX 49224661 49224965 CACNA1F 1 +chrX 49225903 49226740 CACNA1F 1 +chrX 49226997 49227191 CACNA1F 1 +chrX 49227949 49228395 CACNA1F 1 +chrX 49230131 49230559 CACNA1F 1 +chrX 49230858 49231049 CACNA1F 1 +chrX 49231196 49231384 CACNA1F 1 +chrX 49231731 49232017 CACNA1F 1 +chrX 49233219 49233410 CACNA1F 1 +chrX 49235469 49235669 CCDC22 1 +chrX 49237008 49237217 CCDC22 1 +chrX 49241984 49242166 CCDC22 1 +chrX 49242813 49243401 CCDC22 1 +chrX 49246762 49247119 CCDC22 1 +chrX 49247551 49247819 CCDC22 1 +chrX 49248222 49248997 CCDC22 1 +chrX 49249093 49249272 CCDC22 1 +chrX 49249443 49249729 CCDC22 1 +chrX 49250163 49250372 CCDC22 1 +chrX 49251286 49251797 FOXP3 1 +chrX 49253108 49253287 FOXP3 1 +chrX 49253822 49254016 FOXP3 1 +chrX 49255431 49255616 FOXP3 1 +chrX 49255634 49255828 FOXP3 1 +chrX 49256669 49256967 FOXP3 1 +chrX 49257477 49257852 FOXP3 1 +chrX 49258315 49258521 FOXP3 1 +chrX 49259087 49259305 FOXP3 1 +chrX 49269884 49270955 PPP1R3F 1 +chrX 49281224 49281531 PPP1R3F 1 +chrX 49281852 49282067 PPP1R3F 1 +chrX 49285868 49287197 PPP1R3F 1 +chrX 49301246 49301425 Intergenic_2617 1 +chrX 49605936 49606142 GAGE1 1 +chrX 49687467 49687652 PAGE1 1 +chrX 49689415 49689535 PAGE1 1 +chrX 49691202 49691396 PAGE1 1 +chrX 49694124 49694297 PAGE1 1 +chrX 49694650 49694826 PAGE1 1 +chrX 49830338 49830565 PAGE4 1 +chrX 49830928 49831149 PAGE4 1 +chrX 49832508 49832702 PAGE4 1 +chrX 49833868 49834068 PAGE4 1 +chrX 49878415 49878775 USP27X-AS1 1 +chrX 49880242 49881568 USP27X 1 +chrX 49925127 49925336 CLCN5 1 +chrX 50003017 50003225 CLCN5 1 +chrX 50003508 50003708 CLCN5 1 +chrX 50008447 50008629 CLCN5 1 +chrX 50008823 50009029 CLCN5 1 +chrX 50009612 50009791 CLCN5 1 +chrX 50010685 50010873 CLCN5 1 +chrX 50013173 50013385 CLCN5 1 +chrX 50014600 50014800 CLCN5 1 +chrX 50041723 50041893 CLCN5 1 +chrX 50042271 50042495 CLCN5 1 +chrX 50069833 50070009 CLCN5 1 +chrX 50072438 50072626 CLCN5 1 +chrX 50075815 50076030 CLCN5 1 +chrX 50080485 50080682 CLCN5 1 +chrX 50081580 50081768 CLCN5 1 +chrX 50085904 50086131 CLCN5 1 +chrX 50086235 50086847 CLCN5 1 +chrX 50088636 50088830 CLCN5 1 +chrX 50090057 50090817 CLCN5 1 +chrX 50092085 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DGKK 1 +chrX 50386283 50386539 DGKK 1 +chrX 50387457 50387657 DGKK 1 +chrX 50388405 50388608 DGKK 1 +chrX 50390264 50390467 DGKK 1 +chrX 50391468 50391680 DGKK 1 +chrX 50392324 50392524 DGKK 1 +chrX 50393211 50393399 DGKK 1 +chrX 50401053 50401238 DGKK 1 +chrX 50402961 50403146 DGKK 1 +chrX 50403512 50403703 DGKK 1 +chrX 50404078 50404278 DGKK 1 +chrX 50420378 50420590 DGKK 1 +chrX 50422331 50422540 DGKK 1 +chrX 50424148 50424339 DGKK 1 +chrX 50470021 50470710 DGKK 1 +chrX 50596586 50596964 SHROOM4 1 +chrX 50598320 50598615 SHROOM4 1 +chrX 50602553 50602753 SHROOM4 1 +chrX 50607302 50607659 SHROOM4 1 +chrX 50607717 50608142 SHROOM4 1 +chrX 50627589 50627759 SHROOM4 1 +chrX 50633090 50635622 SHROOM4 1 +chrX 50638065 50638280 SHROOM4 1 +chrX 50695689 50695901 SHROOM4 1 +chrX 50813898 50814098 SHROOM4 1 +chrX 50905808 50905928 Intergenic_2619 1 +chrX 50910701 50911052 BMP15 1 +chrX 50915782 50916625 BMP15 1 +chrX 51332856 51332976 NUDT10 1 +chrX 51333440 51333560 NUDT10 1 +chrX 51336075 51336263 NUDT10 1 +chrX 51406932 51408507 CXorf67 1 +chrX 51491696 51491920 NUDT11 1 +chrX 51496407 51496527 NUDT11 1 +chrX 51743534 51745589 GSPT2 1 +chrX 51894134 51894334 MAGED1 1 +chrX 51894535 51894735 MAGED1 1 +chrX 51895083 51895852 MAGED1 1 +chrX 51896334 51897284 MAGED1 1 +chrX 51897566 51897911 MAGED1 1 +chrX 51898168 51898395 MAGED1 1 +chrX 51898517 51898711 MAGED1 1 +chrX 51900069 51900275 MAGED1 1 +chrX 51901569 51902027 MAGED1 1 +chrX 52796373 52796603 SPANXN5 1 +chrX 52797304 52797424 SPANXN5 1 +chrX 52812627 52812747 XAGE5 1 +chrX 52814245 52814365 XAGE5 1 +chrX 52862442 52862642 XAGE3 1 +chrX 52864883 52865003 XAGE3 1 +chrX 52866510 52866628 XAGE3 1 +chrX 52866920 52867120 XAGE3 1 +chrX 53076509 53077841 GPR173 1 +chrX 53082396 53083387 TSPYL2 1 +chrX 53084498 53086452 TSPYL2 1 +chrX 53087773 53088047 TSPYL2 1 +chrX 53192625 53193850 KDM5C 1 +chrX 53194093 53194666 KDM5C 1 +chrX 53194949 53195466 KDM5C 1 +chrX 53195953 53196138 KDM5C 1 +chrX 53196612 53196981 KDM5C 1 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53536678 HUWE1 1 +chrX 53537600 53537785 HUWE1 1 +chrX 53538235 53538438 HUWE1 1 +chrX 53538874 53539166 HUWE1 1 +chrX 53539667 53539876 HUWE1 1 +chrX 53542450 53542659 HUWE1 1 +chrX 53543879 53544079 HUWE1 1 +chrX 53544626 53544829 HUWE1 1 +chrX 53544922 53545137 HUWE1 1 +chrX 53546344 53546775 HUWE1 1 +chrX 53547729 53548347 HUWE1 1 +chrX 53548982 53549597 HUWE1 1 +chrX 53550577 53551429 HUWE1 1 +chrX 53552320 53552538 HUWE1 1 +chrX 53552700 53552968 HUWE1 1 +chrX 53554566 53554867 HUWE1 1 +chrX 53556136 53556321 HUWE1 1 +chrX 53557242 53557498 HUWE1 1 +chrX 53558589 53559017 HUWE1 1 +chrX 53559279 53559482 HUWE1 1 +chrX 53560086 53560393 HUWE1 1 +chrX 53561745 53561951 HUWE1 1 +chrX 53562146 53562352 HUWE1 1 +chrX 53562854 53563039 HUWE1 1 +chrX 53563746 53563943 HUWE1 1 +chrX 53564619 53564801 HUWE1 1 +chrX 53565112 53565324 HUWE1 1 +chrX 53568742 53568954 HUWE1 1 +chrX 53569666 53569881 HUWE1 1 +chrX 53573696 53573896 HUWE1 1 +chrX 53575012 53575212 HUWE1 1 +chrX 53575600 53575830 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55009061 55009350 ALAS2 1 +chrX 55013391 55013591 ALAS2 1 +chrX 55014812 55015095 ALAS2 1 +chrX 55015511 55015687 ALAS2 1 +chrX 55017436 55017636 ALAS2 1 +chrX 55020248 55020460 ALAS2 1 +chrX 55021094 55021359 ALAS2 1 +chrX 55023771 55023974 ALAS2 1 +chrX 55024744 55024953 ALAS2 1 +chrX 55025742 55025948 ALAS2 1 +chrX 55027753 55027959 ALAS2 1 +chrX 55030793 55031005 ALAS2 1 +chrX 55143699 55143902 FAM104B 1 +chrX 55145989 55146334 FAM104B 1 +chrX 55147226 55147426 FAM104B 1 +chrX 55159060 55159242 FAM104B 1 +chrX 55160798 55161232 FAM104B 1 +chrX 55181811 55181931 MTRNR2L10 1 +chrX 55220438 55220697 PAGE5 1 +chrX 55222520 55222640 PAGE5 1 +chrX 55223871 55224071 PAGE5 1 +chrX 55258402 55258596 PAGE3 1 +chrX 55260493 55260705 PAGE3 1 +chrX 55263222 55263431 PAGE3 1 +chrX 55263804 55264010 PAGE3 1 +chrX 55451341 55451514 MIR4536-1 1 +chrX 55452328 55453094 MAGEH1 1 +chrX 55486692 55488996 USP51 1 +chrX 55623562 55624725 FOXR2 1 +chrX 55718214 55718494 RRAGB 1 +chrX 55719266 55719466 RRAGB 1 +chrX 55722141 55722320 RRAGB 1 +chrX 55727311 55727511 RRAGB 1 +chrX 55729268 55729471 RRAGB 1 +chrX 55731379 55731677 RRAGB 1 +chrX 55751081 55751266 RRAGB 1 +chrX 55753316 55753510 RRAGB 1 +chrX 55755753 55755959 RRAGB 1 +chrX 55757176 55757373 RRAGB 1 +chrX 55758254 55758433 RRAGB 1 +chrX 56074561 56074847 KLF8 1 +chrX 56233148 56233268 KLF8 1 +chrX 56250242 56250433 KLF8 1 +chrX 56265107 56265689 KLF8 1 +chrX 56268777 56268968 KLF8 1 +chrX 56269264 56269458 KLF8 1 +chrX 56270088 56270279 KLF8 1 +chrX 56284243 56284594 KLF8 1 +chrX 56563794 56565831 UBQLN2 1 +chrX 56984399 56984620 SPIN3 1 +chrX 56994207 56995038 SPIN3 1 +chrX 57286720 57287024 FAAH2 1 +chrX 57292492 57292686 FAAH2 1 +chrX 57310554 57310772 FAAH2 1 +chrX 57331674 57331847 FAAH2 1 +chrX 57341221 57341436 FAAH2 1 +chrX 57378693 57378863 FAAH2 1 +chrX 57380795 57381022 FAAH2 1 +chrX 57431832 57432041 FAAH2 1 +chrX 57446889 57447095 FAAH2 1 +chrX 57448538 57448759 FAAH2 1 +chrX 57488689 57489058 FAAH2 1 +chrX 57592223 57592559 ZXDB 1 +chrX 57592629 57592959 ZXDB 1 +chrX 57593017 57593137 ZXDB 1 +chrX 57594229 57594580 ZXDB 1 +chrX 57907933 57908201 ZXDA 1 +chrX 57909364 57909484 ZXDA 1 +chrX 57909521 57909863 ZXDA 1 +chrX 57909924 57910263 ZXDA 1 +chrX 63349957 63350933 SPIN4 1 +chrX 63635163 63635505 ARHGEF9 1 +chrX 63637963 63638145 ARHGEF9 1 +chrX 63643883 63644068 ARHGEF9 1 +chrX 63655406 63655695 ARHGEF9 1 +chrX 63665815 63666009 ARHGEF9 1 +chrX 63674065 63674274 ARHGEF9 1 +chrX 63678360 63678646 ARHGEF9 1 +chrX 63697069 63697284 ARHGEF9 1 +chrX 63706202 63706381 ARHGEF9 1 +chrX 63724587 63724790 ARHGEF9 1 +chrX 63754218 63754519 ARHGEF9 1 +chrX 63785164 63785284 ARHGEF9 1 +chrX 63785989 63786207 MIR1468 1 +chrX 64185939 64186305 AMER1 1 +chrX 64189773 64193324 AMER1 1 +chrX 64224197 64224400 ASB12 1 +chrX 64224850 64225705 ASB12 1 +chrX 64268424 64269095 MTMR8 1 +chrX 64270969 64271163 MTMR8 1 +chrX 64328735 64328941 MTMR8 1 +chrX 64331534 64331731 MTMR8 1 +chrX 64335940 64336131 MTMR8 1 +chrX 64337209 64337391 MTMR8 1 +chrX 64343622 64343822 MTMR8 1 +chrX 64345082 64345285 MTMR8 1 +chrX 64348581 64348760 MTMR8 1 +chrX 64349899 64350093 MTMR8 1 +chrX 64354725 64354922 MTMR8 1 +chrX 64356147 64356353 MTMR8 1 +chrX 64359326 64359547 MTMR8 1 +chrX 64360222 64360404 MTMR8 1 +chrX 64395239 64395409 MTMR8 1 +chrX 64917668 64917865 ZC4H2 1 +chrX 64919094 64919282 ZC4H2 1 +chrX 64920134 64920328 ZC4H2 1 +chrX 64921736 64922105 ZC4H2 1 +chrX 64976249 64976446 ZC4H2 1 +chrX 65488755 65489435 ZC3H12B 1 +chrX 65497121 65497324 ZC3H12B 1 +chrX 65498990 65499276 ZC3H12B 1 +chrX 65499868 65500053 ZC3H12B 1 +chrX 65501705 65503265 ZC3H12B 1 +chrX 65512650 65512868 LAS1L 1 +chrX 65514793 65514993 LAS1L 1 +chrX 65517950 65518494 LAS1L 1 +chrX 65523602 65523781 LAS1L 1 +chrX 65524133 65524327 LAS1L 1 +chrX 65524437 65524625 LAS1L 1 +chrX 65524916 65525095 LAS1L 1 +chrX 65528154 65528363 LAS1L 1 +chrX 65529152 65529373 LAS1L 1 +chrX 65529580 65529830 LAS1L 1 +chrX 65531372 65531551 LAS1L 1 +chrX 65532531 65532713 LAS1L 1 +chrX 65533626 65533841 LAS1L 1 +chrX 65534446 65534726 LAS1L 1 +chrX 65667817 65667937 MSN 1 +chrX 65716575 65716695 MSN 1 +chrX 65716834 65717031 MSN 1 +chrX 65727836 65728021 MSN 1 +chrX 65729479 65729789 MSN 1 +chrX 65731123 65731308 MSN 1 +chrX 65731885 65732073 MSN 1 +chrX 65733203 65733382 MSN 1 +chrX 65735323 65735520 MSN 1 +chrX 65736831 65737022 MSN 1 +chrX 65737232 65737432 MSN 1 +chrX 65738545 65738730 MSN 1 +chrX 65739096 65739284 MSN 1 +chrX 65739799 65739972 MSN 1 +chrX 66018896 66019099 MIR223 1 +chrX 66021999 66022451 VSIG4 1 +chrX 66022810 66022998 VSIG4 1 +chrX 66025050 66025232 VSIG4 1 +chrX 66027342 66027536 VSIG4 1 +chrX 66027905 66028105 VSIG4 1 +chrX 66032525 66032823 VSIG4 1 +chrX 66033396 66033774 VSIG4 1 +chrX 66039997 66040173 VSIG4 1 +chrX 66162654 66162910 HEPH 1 +chrX 66170442 66170802 HEPH 1 +chrX 66171053 66171271 HEPH 1 +chrX 66172327 66172622 HEPH 1 +chrX 66173657 66173848 HEPH 1 +chrX 66188394 66188582 HEPH 1 +chrX 66189622 66189878 HEPH 1 +chrX 66192182 66192388 HEPH 1 +chrX 66193478 66193663 HEPH 1 +chrX 66195135 66195311 HEPH 1 +chrX 66197613 66197834 HEPH 1 +chrX 66198807 66199007 HEPH 1 +chrX 66200620 66200805 HEPH 1 +chrX 66203418 66203642 HEPH 1 +chrX 66207089 66207289 HEPH 1 +chrX 66208029 66208208 HEPH 1 +chrX 66255035 66255250 HEPH 1 +chrX 66256131 66256426 HEPH 1 +chrX 66258824 66259054 HEPH 1 +chrX 66260146 66260349 HEPH 1 +chrX 66263520 66263726 HEPH 1 +chrX 66266456 66266757 HEPH 1 +chrX 66598021 66598221 EDA2R 1 +chrX 66599495 66600175 EDA2R 1 +chrX 66602560 66602748 EDA2R 1 +chrX 66604438 66604614 EDA2R 1 +chrX 66604991 66605173 EDA2R 1 +chrX 66615820 66616011 EDA2R 1 +chrX 67545038 67545294 AR 1 +chrX 67545355 67546494 AR 1 +chrX 67546558 67546820 AR 1 +chrX 67568928 67569122 AR 1 +chrX 67643180 67643356 AR 1 +chrX 67680605 67680817 AR 1 +chrX 67685940 67686149 AR 1 +chrX 67689423 67689611 AR 1 +chrX 67694631 67694840 AR 1 +chrX 67711330 67711610 AR 1 +chrX 67717506 67717724 AR 1 +chrX 67721857 67722045 AR 1 +chrX 67722787 67722966 AR 1 +chrX 67723646 67723920 AR 1 +chrX 68048274 68048492 OPHN1 1 +chrX 68052392 68052589 OPHN1 1 +chrX 68053567 68053752 OPHN1 1 +chrX 68063889 68064240 OPHN1 1 +chrX 68073062 68073250 OPHN1 1 +chrX 68096801 68096974 OPHN1 1 +chrX 68111761 68111934 OPHN1 1 +chrX 68113079 68113285 OPHN1 1 +chrX 68119126 68119329 OPHN1 1 +chrX 68192888 68193097 OPHN1 1 +chrX 68193820 68194011 OPHN1 1 +chrX 68194342 68194536 OPHN1 1 +chrX 68197196 68197399 OPHN1 1 +chrX 68201609 68201794 OPHN1 1 +chrX 68206597 68206788 OPHN1 1 +chrX 68209969 68210246 OPHN1 1 +chrX 68211990 68212202 OPHN1 1 +chrX 68213840 68214061 OPHN1 1 +chrX 68234458 68234673 OPHN1 1 +chrX 68274601 68274813 OPHN1 1 +chrX 68282950 68283147 OPHN1 1 +chrX 68299023 68299214 OPHN1 1 +chrX 68432799 68432972 OPHN1 1 +chrX 68498960 68499080 YIPF6 1 +chrX 68511803 68512018 YIPF6 1 +chrX 68513211 68513393 YIPF6 1 +chrX 68518678 68518890 YIPF6 1 +chrX 68521331 68521534 YIPF6 1 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69670205 69670408 EDA 1 +chrX 69860930 69861050 EDA 1 +chrX 69956987 69957181 EDA 1 +chrX 70022738 70022929 EDA 1 +chrX 70023078 70023254 EDA 1 +chrX 70027801 70027971 EDA 1 +chrX 70029450 70029647 EDA 1 +chrX 70030331 70030534 EDA 1 +chrX 70033323 70033535 EDA 1 +chrX 70035406 70035704 EDA 1 +chrX 70041783 70041956 AWAT2 1 +chrX 70042170 70042515 AWAT2 1 +chrX 70043103 70043315 AWAT2 1 +chrX 70043422 70043604 AWAT2 1 +chrX 70043917 70044129 AWAT2 1 +chrX 70044306 70044503 AWAT2 1 +chrX 70049737 70049931 AWAT2 1 +chrX 70062429 70063515 OTUD6A 1 +chrX 70133878 70134057 IGBP1 1 +chrX 70134764 70134884 IGBP1 1 +chrX 70146785 70146905 IGBP1 1 +chrX 70148825 70148945 IGBP1 1 +chrX 70150240 70150437 IGBP1 1 +chrX 70165880 70166086 IGBP1 1 +chrX 70177430 70177606 DGAT2L6 1 +chrX 70199207 70199392 DGAT2L6 1 +chrX 70199761 70199955 DGAT2L6 1 +chrX 70200280 70200480 DGAT2L6 1 +chrX 70201846 70202049 DGAT2L6 1 +chrX 70204319 70204498 DGAT2L6 1 +chrX 70204998 70205207 DGAT2L6 1 +chrX 70234688 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70431095 70431215 GDPD2 1 +chrX 70432264 70432642 GDPD2 1 +chrX 70432880 70433157 GDPD2 1 +chrX 70445129 70445563 DLG3 1 +chrX 70448491 70448721 DLG3 1 +chrX 70448882 70449052 DLG3 1 +chrX 70449263 70449451 DLG3 1 +chrX 70449731 70449940 DLG3 1 +chrX 70450130 70450339 DLG3 1 +chrX 70450535 70450750 DLG3 1 +chrX 70451801 70451971 DLG3 1 +chrX 70452502 70452687 DLG3 1 +chrX 70453686 70453889 DLG3 1 +chrX 70454194 70454400 DLG3 1 +chrX 70479082 70479270 DLG3 1 +chrX 70492160 70492366 DLG3 1 +chrX 70492413 70492598 DLG3 1 +chrX 70493268 70493453 DLG3 1 +chrX 70495285 70495506 DLG3 1 +chrX 70497070 70497267 DLG3 1 +chrX 70498423 70498599 DLG3 1 +chrX 70499144 70499356 DLG3 1 +chrX 70499844 70500017 DLG3 1 +chrX 70500485 70500685 DLG3 1 +chrX 70500783 70500983 DLG3 1 +chrX 70502130 70502416 DLG3 1 +chrX 70529010 70529216 TEX11 1 +chrX 70529891 70530076 TEX11 1 +chrX 70552082 70552300 TEX11 1 +chrX 70553325 70553522 TEX11 1 +chrX 70554613 70554816 TEX11 1 +chrX 70591689 70591877 TEX11 1 +chrX 70605322 70605528 TEX11 1 +chrX 70606818 70607033 TEX11 1 +chrX 70609003 70609203 TEX11 1 +chrX 70610359 70610547 TEX11 1 +chrX 70623943 70624137 TEX11 1 +chrX 70624706 70624915 TEX11 1 +chrX 70629554 70629736 TEX11 1 +chrX 70651433 70651618 TEX11 1 +chrX 70670306 70670518 TEX11 1 +chrX 70678722 70678916 TEX11 1 +chrX 70682685 70682888 TEX11 1 +chrX 70722565 70722747 TEX11 1 +chrX 70725130 70725333 TEX11 1 +chrX 70740684 70740887 TEX11 1 +chrX 70744025 70744234 TEX11 1 +chrX 70806671 70806877 TEX11 1 +chrX 70833422 70833622 TEX11 1 +chrX 70853076 70853338 TEX11 1 +chrX 70860721 70860930 TEX11 1 +chrX 70873176 70873376 TEX11 1 +chrX 70879981 70880172 TEX11 1 +chrX 70907662 70907850 TEX11 1 +chrX 70925785 70926219 SLC7A3 1 +chrX 70926448 70926977 SLC7A3 1 +chrX 70927215 70928218 SLC7A3 1 +chrX 70928384 70928569 SLC7A3 1 +chrX 70928852 70929049 SLC7A3 1 +chrX 70929672 70930091 SLC7A3 1 +chrX 71056369 71056572 Intergenic_2623 1 +chrX 71060868 71061056 SNX12 1 +chrX 71061750 71061947 SNX12 1 +chrX 71062870 71063052 SNX12 1 +chrX 71068111 71068400 SNX12 1 +chrX 71096465 71096988 FOXO4 1 +chrX 71100679 71101759 FOXO4 1 +chrX 71102133 71102253 FOXO4 1 +chrX 71103001 71103364 FOXO4 1 +chrX 71103951 71104394 CXorf65 1 +chrX 71104651 71104830 CXorf65 1 +chrX 71105923 71106132 CXorf65 1 +chrX 71106293 71106656 CXorf65 1 +chrX 71107648 71107854 IL2RG 1 +chrX 71108277 71108474 IL2RG 1 +chrX 71108609 71108800 IL2RG 1 +chrX 71109268 71109462 IL2RG 1 +chrX 71110122 71110325 IL2RG 1 +chrX 71110564 71110740 IL2RG 1 +chrX 71110951 71111130 IL2RG 1 +chrX 71111351 71111610 IL2RG 1 +chrX 71118746 71118934 MED12 1 +chrX 71119233 71119454 MED12 1 +chrX 71119706 71120214 MED12 1 +chrX 71120910 71121768 MED12 1 +chrX 71122226 71122906 MED12 1 +chrX 71123000 71123185 MED12 1 +chrX 71123487 71123681 MED12 1 +chrX 71124058 71124341 MED12 1 +chrX 71124731 71125183 MED12 1 +chrX 71125351 71125726 MED12 1 +chrX 71126018 71126215 MED12 1 +chrX 71126348 71126533 MED12 1 +chrX 71126902 71127075 MED12 1 +chrX 71127346 71127516 MED12 1 +chrX 71127945 71128779 MED12 1 +chrX 71129019 71129391 MED12 1 +chrX 71129626 71130146 MED12 1 +chrX 71131449 71131661 MED12 1 +chrX 71132033 71132568 MED12 1 +chrX 71132848 71133208 MED12 1 +chrX 71134236 71134448 MED12 1 +chrX 71134614 71134826 MED12 1 +chrX 71135147 71135332 MED12 1 +chrX 71136254 71136629 MED12 1 +chrX 71136870 71137953 MED12 1 +chrX 71140530 71140736 MED12 1 +chrX 71141271 71141474 MED12 1 +chrX 71141787 71142008 MED12 1 +chrX 71142243 71142363 MED12 1 +chrX 71147633 71148236 NLGN3 1 +chrX 71148748 71148933 NLGN3 1 +chrX 71153337 71153543 NLGN3 1 +chrX 71155248 71155460 NLGN3 1 +chrX 71164213 71164383 NLGN3 1 +chrX 71167000 71167831 NLGN3 1 +chrX 71169309 71170134 NLGN3 1 +chrX 71223684 71224604 GJB1 1 +chrX 71240797 71241314 ZMYM3 1 +chrX 71242231 71242490 ZMYM3 1 +chrX 71242992 71243186 ZMYM3 1 +chrX 71243849 71244067 ZMYM3 1 +chrX 71244291 71244485 ZMYM3 1 +chrX 71244813 71244998 ZMYM3 1 +chrX 71245278 71246038 ZMYM3 1 +chrX 71246417 71246750 ZMYM3 1 +chrX 71247285 71247494 ZMYM3 1 +chrX 71247794 71247988 ZMYM3 1 +chrX 71248096 71248752 ZMYM3 1 +chrX 71249008 71249276 ZMYM3 1 +chrX 71249319 71249673 ZMYM3 1 +chrX 71250086 71250262 ZMYM3 1 +chrX 71250429 71250730 ZMYM3 1 +chrX 71251088 71251282 ZMYM3 1 +chrX 71251407 71251634 ZMYM3 1 +chrX 71252644 71253336 ZMYM3 1 +chrX 71290685 71290876 NONO 1 +chrX 71291930 71292050 NONO 1 +chrX 71294432 71294626 NONO 1 +chrX 71296587 71296766 NONO 1 +chrX 71297003 71297123 NONO 1 +chrX 71297393 71297587 NONO 1 +chrX 71297861 71298058 NONO 1 +chrX 71298451 71298657 NONO 1 +chrX 71298736 71298921 NONO 1 +chrX 71301708 71301887 BCYRN1 1 +chrX 71302077 71302517 BCYRN1 1 +chrX 71303177 71303854 BCYRN1 1 +chrX 71304080 71304268 BCYRN1 1 +chrX 71304418 71304600 BCYRN1 1 +chrX 71305021 71305286 BCYRN1 1 +chrX 71366302 71366591 TAF1 1 +chrX 71367530 71367700 TAF1 1 +chrX 71368086 71368286 TAF1 1 +chrX 71375201 71375392 TAF1 1 +chrX 71376987 71377279 TAF1 1 +chrX 71377646 71377908 TAF1 1 +chrX 71378358 71378546 TAF1 1 +chrX 71378899 71379099 TAF1 1 +chrX 71381805 71382002 TAF1 1 +chrX 71382584 71383252 TAF1 1 +chrX 71384023 71384220 TAF1 1 +chrX 71384971 71385147 TAF1 1 +chrX 71387388 71387508 TAF1 1 +chrX 71388282 71388464 TAF1 1 +chrX 71388777 71388953 TAF1 1 +chrX 71389599 71389778 TAF1 1 +chrX 71392636 71393076 TAF1 1 +chrX 71393363 71393560 TAF1 1 +chrX 71394130 71394330 TAF1 1 +chrX 71397184 71397384 TAF1 1 +chrX 71398629 71398820 TAF1 1 +chrX 71401578 71401808 TAF1 1 +chrX 71406666 71406842 TAF1 1 +chrX 71407597 71407782 TAF1 1 +chrX 71408037 71408234 TAF1 1 +chrX 71421317 71421505 TAF1 1 +chrX 71423164 71423355 TAF1 1 +chrX 71424028 71424314 TAF1 1 +chrX 71454034 71454240 TAF1 1 +chrX 71454810 71455063 TAF1 1 +chrX 71458278 71458466 TAF1 1 +chrX 71459174 71459344 TAF1 1 +chrX 71459604 71459801 TAF1 1 +chrX 71460693 71460967 TAF1 1 +chrX 71463852 71464191 TAF1 1 +chrX 71528467 71528658 TAF1 1 +chrX 71529663 71529934 TAF1 1 +chrX 71533117 71533311 OGT 1 +chrX 71536224 71536433 OGT 1 +chrX 71536886 71537006 OGT 1 +chrX 71537876 71538141 OGT 1 +chrX 71544493 71544714 OGT 1 +chrX 71547752 71548026 OGT 1 +chrX 71554419 71554610 OGT 1 +chrX 71555259 71555432 OGT 1 +chrX 71555923 71556135 OGT 1 +chrX 71556692 71557354 OGT 1 +chrX 71557467 71557697 OGT 1 +chrX 71559248 71559706 OGT 1 +chrX 71561761 71561967 OGT 1 +chrX 71562772 71563449 OGT 1 +chrX 71564549 71564761 OGT 1 +chrX 71567431 71567693 OGT 1 +chrX 71567897 71568094 OGT 1 +chrX 71573551 71573828 OGT 1 +chrX 71580742 71580862 GCNA 1 +chrX 71592026 71592223 GCNA 1 +chrX 71592548 71592671 GCNA 1 +chrX 71594235 71594426 GCNA 1 +chrX 71594757 71594881 GCNA 1 +chrX 71597860 71598057 GCNA 1 +chrX 71603576 71603696 GCNA 1 +chrX 71604234 71604680 GCNA 1 +chrX 71605574 71605765 GCNA 1 +chrX 71608899 71609069 GCNA 1 +chrX 71610622 71610807 GCNA 1 +chrX 71612416 71612631 GCNA 1 +chrX 71612826 71613109 GCNA 1 +chrX 71616264 71617640 CXCR3 1 +chrX 71618430 71618624 CXCR3 1 +chrX 71911087 71911376 NHSL2 1 +chrX 72129723 72131621 RTL5 1 +chrX 72131990 72132243 NHSL2 1 +chrX 72134048 72134239 NHSL2 1 +chrX 72134581 72134781 NHSL2 1 +chrX 72137029 72137220 NHSL2 1 +chrX 72138474 72140825 NHSL2 1 +chrX 72142197 72142400 NHSL2 1 +chrX 72143305 72143650 NHSL2 1 +chrX 72144398 72144589 FLJ44635 1 +chrX 72159778 72160114 FLJ44635 1 +chrX 72181636 72181913 PIN4 1 +chrX 72186273 72186624 PIN4 1 +chrX 72196858 72197052 PIN4 1 +chrX 72197243 72197428 PIN4 1 +chrX 72197498 72197618 PIN4 1 +chrX 72204896 72208687 PIN4 1 +chrX 72238811 72239011 PIN4 1 +chrX 72262636 72262901 PIN4 1 +chrX 72272539 72272659 RPS4X 1 +chrX 72273353 72273473 RPS4X 1 +chrX 72273938 72274058 RPS4X 1 +chrX 72274214 72274423 RPS4X 1 +chrX 72275116 72275236 RPS4X 1 +chrX 72275688 72275808 RPS4X 1 +chrX 72276223 72276343 RPS4X 1 +chrX 72277208 72277328 RPS4X 1 +chrX 72298834 72299016 Intergenic_2624 1 +chrX 72301652 72302187 CITED1 1 +chrX 72302764 72302976 CITED1 1 +chrX 72305248 72305498 CITED1 1 +chrX 72329507 72329891 HDAC8 1 +chrX 72329919 72330039 HDAC8 1 +chrX 72351730 72351909 HDAC8 1 +chrX 72462025 72462213 HDAC8 1 +chrX 72464524 72464810 HDAC8 1 +chrX 72467828 72467948 HDAC8 1 +chrX 72474515 72474807 HDAC8 1 +chrX 72475351 72475575 HDAC8 1 +chrX 72480273 72480393 HDAC8 1 +chrX 72488874 72489101 HDAC8 1 +chrX 72489179 72489388 HDAC8 1 +chrX 72490869 72491063 HDAC8 1 +chrX 72495168 72495356 HDAC8 1 +chrX 72567683 72567951 HDAC8 1 +chrX 72568685 72568897 HDAC8 1 +chrX 72571937 72572131 HDAC8 1 +chrX 72572700 72572909 HDAC8 1 +chrX 72580904 72581190 PHKA1 1 +chrX 72582346 72582522 PHKA1 1 +chrX 72584151 72584339 PHKA1 1 +chrX 72593043 72593376 PHKA1 1 +chrX 72599755 72599925 PHKA1 1 +chrX 72601976 72602265 PHKA1 1 +chrX 72603021 72603194 PHKA1 1 +chrX 72605231 72605609 PHKA1 1 +chrX 72609626 72609811 PHKA1 1 +chrX 72610996 72611214 PHKA1 1 +chrX 72618685 72618885 PHKA1 1 +chrX 72619144 72619326 PHKA1 1 +chrX 72620772 72620987 PHKA1 1 +chrX 72623058 72623273 PHKA1 1 +chrX 72626855 72627049 PHKA1 1 +chrX 72635054 72635269 PHKA1 1 +chrX 72636234 72636428 PHKA1 1 +chrX 72644283 72644492 PHKA1 1 +chrX 72650313 72650513 PHKA1 1 +chrX 72652467 72652670 PHKA1 1 +chrX 72653337 72653567 PHKA1 1 +chrX 72656077 72656277 PHKA1 1 +chrX 72657511 72657711 PHKA1 1 +chrX 72666120 72666326 PHKA1 1 +chrX 72667314 72667529 PHKA1 1 +chrX 72676084 72676260 PHKA1 1 +chrX 72684513 72684701 PHKA1 1 +chrX 72695766 72695963 PHKA1 1 +chrX 72705196 72705378 PHKA1 1 +chrX 72712832 72713032 PHKA1 1 +chrX 73127481 73127998 NAP1L6 1 +chrX 73212989 73214611 NAP1L2 1 +chrX 73447169 73447695 CDX4 1 +chrX 73453534 73453755 CDX4 1 +chrX 73454293 73454641 CDX4 1 +chrX 73563201 73563401 CHIC1 1 +chrX 73563456 73563576 CHIC1 1 +chrX 73577350 73577523 CHIC1 1 +chrX 73577859 73578038 CHIC1 1 +chrX 73584385 73584603 CHIC1 1 +chrX 73679178 73679384 CHIC1 1 +chrX 73679652 73679858 CHIC1 1 +chrX 73680888 73681147 CHIC1 1 +chrX 73820727 73828056 TSIX 1 +chrX 73829048 73829248 TSIX 1 +chrX 73831018 73831200 XIST 1 +chrX 73833157 73833336 XIST 1 +chrX 73837295 73837498 XIST 1 +chrX 73841330 73844721 XIST 1 +chrX 73844776 73845041 XIST 1 +chrX 73845081 73845281 XIST 1 +chrX 73845351 73845921 XIST 1 +chrX 73845961 73846167 XIST 1 +chrX 73846231 73847444 XIST 1 +chrX 73847502 73852721 XIST 1 +chrX 73874973 73875197 Intergenic_2625 1 +chrX 73875473 73875652 Intergenic_2626 1 +chrX 74185847 74186047 FTX 1 +chrX 74186114 74186527 FTX 1 +chrX 74186677 74187253 FTX 1 +chrX 74218372 74218631 FTX 1 +chrX 74287114 74287385 FTX 1 +chrX 74304242 74304863 ZCCHC13 1 +chrX 74421297 74422110 SLC16A2 1 +chrX 74520934 74521128 SLC16A2 1 +chrX 74524390 74524827 SLC16A2 1 +chrX 74525661 74525846 SLC16A2 1 +chrX 74529111 74529397 SLC16A2 1 +chrX 74531368 74531666 SLC16A2 1 +chrX 74591486 74591606 RLIM 1 +chrX 74591640 74591834 RLIM 1 +chrX 74591892 74592012 RLIM 1 +chrX 74592061 74592794 RLIM 1 +chrX 74592852 74592972 RLIM 1 +chrX 74594322 74594495 RLIM 1 +chrX 74595878 74596063 RLIM 1 +chrX 74739258 74739532 NEXMIF 1 +chrX 74740143 74744568 NEXMIF 1 +chrX 74745509 74745697 NEXMIF 1 +chrX 75053280 75053640 ABCB7 1 +chrX 75060218 75060391 ABCB7 1 +chrX 75062312 75062497 ABCB7 1 +chrX 75065010 75065219 ABCB7 1 +chrX 75068950 75069387 ABCB7 1 +chrX 75070343 75070540 ABCB7 1 +chrX 75071456 75071662 ABCB7 1 +chrX 75073757 75074016 ABCB7 1 +chrX 75075355 75075635 ABCB7 1 +chrX 75076457 75076669 ABCB7 1 +chrX 75098868 75099077 ABCB7 1 +chrX 75112816 75113040 ABCB7 1 +chrX 75114693 75114881 ABCB7 1 +chrX 75156042 75156227 ABCB7 1 +chrX 75156635 75156835 Intergenic_2627 1 +chrX 75274118 75274718 UPRT 1 +chrX 75291387 75291572 UPRT 1 +chrX 75293458 75293661 UPRT 1 +chrX 75294457 75294645 UPRT 1 +chrX 75296318 75296491 UPRT 1 +chrX 75297493 75297684 UPRT 1 +chrX 75299718 75299900 UPRT 1 +chrX 75300854 75301081 UPRT 1 +chrX 75303429 75303650 UPRT 1 +chrX 75378996 75379211 ZDHHC15 1 +chrX 75416966 75417166 ZDHHC15 1 +chrX 75421763 75421972 ZDHHC15 1 +chrX 75424632 75424808 ZDHHC15 1 +chrX 75428992 75429162 ZDHHC15 1 +chrX 75429872 75430066 ZDHHC15 1 +chrX 75431457 75431657 ZDHHC15 1 +chrX 75450785 75450976 ZDHHC15 1 +chrX 75478819 75478992 ZDHHC15 1 +chrX 75505763 75505963 ZDHHC15 1 +chrX 75522833 75523113 ZDHHC15 1 +chrX 75783419 75785142 MAGEE2 1 +chrX 76173021 76173141 PBDC1 1 +chrX 76173553 76173750 PBDC1 1 +chrX 76174783 76175001 PBDC1 1 +chrX 76175436 76175627 PBDC1 1 +chrX 76176842 76177021 PBDC1 1 +chrX 76177581 76178104 PBDC1 1 +chrX 76427833 76430922 MAGEE1 1 +chrX 76919162 76919341 MIR384 1 +chrX 77005319 77005531 MIR325 1 +chrX 77454059 77454238 FGF16 1 +chrX 77456241 77456622 FGF16 1 +chrX 77508260 77508691 ATRX 1 +chrX 77520760 77520957 ATRX 1 +chrX 77521329 77521514 ATRX 1 +chrX 77522225 77522410 ATRX 1 +chrX 77523232 77523417 ATRX 1 +chrX 77557450 77557659 ATRX 1 +chrX 77558663 77558851 ATRX 1 +chrX 77574236 77574418 ATRX 1 +chrX 77589822 77590016 ATRX 1 +chrX 77593687 77593872 ATRX 1 +chrX 77599374 77599793 ATRX 1 +chrX 77600410 77600583 ATRX 1 +chrX 77616374 77616802 ATRX 1 +chrX 77618775 77618948 ATRX 1 +chrX 77620348 77620533 ATRX 1 +chrX 77633229 77633740 ATRX 1 +chrX 77634530 77634730 ATRX 1 +chrX 77635951 77636136 ATRX 1 +chrX 77652048 77652298 ATRX 1 +chrX 77654021 77654206 ATRX 1 +chrX 77656476 77656664 ATRX 1 +chrX 77663369 77663560 ATRX 1 +chrX 77664542 77664757 ATRX 1 +chrX 77676131 77676322 ATRX 1 +chrX 77681501 77684566 ATRX 1 +chrX 77684854 77685030 ATRX 1 +chrX 77688814 77688990 ATRX 1 +chrX 77693726 77694027 ATRX 1 +chrX 77696585 77696815 ATRX 1 +chrX 77697517 77697693 ATRX 1 +chrX 77698429 77698641 ATRX 1 +chrX 77698705 77698917 ATRX 1 +chrX 77717101 77717271 ATRX 1 +chrX 77786002 77786208 ATRX 1 +chrX 77829095 77829215 MAGT1 1 +chrX 77830755 77830955 MAGT1 1 +chrX 77841167 77841355 MAGT1 1 +chrX 77853757 77853972 MAGT1 1 +chrX 77855430 77855615 MAGT1 1 +chrX 77856711 77856899 MAGT1 1 +chrX 77857317 77857523 MAGT1 1 +chrX 77864154 77864274 MAGT1 1 +chrX 77870778 77870975 MAGT1 1 +chrX 77875385 77875591 MAGT1 1 +chrX 77895366 77895554 MAGT1 1 +chrX 77899488 77899673 COX7B 1 +chrX 77902679 77902879 COX7B 1 +chrX 77962558 77962749 ATP7A 1 +chrX 77965415 77965606 ATP7A 1 +chrX 77966667 77966787 ATP7A 1 +chrX 77967716 77967836 ATP7A 1 +chrX 77969612 77969732 ATP7A 1 +chrX 77971620 77971811 ATP7A 1 +chrX 77988211 77988701 ATP7A 1 +chrX 77989227 77989975 ATP7A 1 +chrX 77998450 77998653 ATP7A 1 +chrX 78003042 78003251 ATP7A 1 +chrX 78009046 78009400 ATP7A 1 +chrX 78011107 78011301 ATP7A 1 +chrX 78011445 78011778 ATP7A 1 +chrX 78012891 78013162 ATP7A 1 +chrX 78014661 78014864 ATP7A 1 +chrX 78015672 78015896 ATP7A 1 +chrX 78020181 78020402 ATP7A 1 +chrX 78020938 78021129 ATP7A 1 +chrX 78029222 78029416 ATP7A 1 +chrX 78031402 78031587 ATP7A 1 +chrX 78033533 78033828 ATP7A 1 +chrX 78038769 78038966 ATP7A 1 +chrX 78039942 78040127 ATP7A 1 +chrX 78040549 78040752 ATP7A 1 +chrX 78042556 78042744 ATP7A 1 +chrX 78043326 78043529 ATP7A 1 +chrX 78045423 78045620 ATP7A 1 +chrX 78046217 78046660 ATP7A 1 +chrX 78104182 78104361 PGK1 1 +chrX 78109866 78110036 PGK1 1 +chrX 78113800 78114056 PGK1 1 +chrX 78114126 78114246 PGK1 1 +chrX 78117335 78117532 PGK1 1 +chrX 78118085 78118285 PGK1 1 +chrX 78122928 78123048 PGK1 1 +chrX 78123339 78123459 PGK1 1 +chrX 78125017 78125137 PGK1 1 +chrX 78125350 78125541 PGK1 1 +chrX 78131486 78131781 TAF9B 1 +chrX 78133361 78133543 TAF9B 1 +chrX 78136918 78137106 TAF9B 1 +chrX 78137818 78137988 TAF9B 1 +chrX 78138058 78138178 TAF9B 1 +chrX 78138858 78139043 TAF9B 1 +chrX 78139487 78139663 TAF9B 1 +chrX 78272653 78273783 CYSLTR1 1 +chrX 78656863 78658506 RTL3 1 +chrX 78754796 78756113 LPAR4 1 +chrX 78901121 78901318 MIR4328 1 +chrX 78960415 78961682 P2RY10 1 +chrX 79170986 79172054 GPR174 1 +chrX 79360967 79361481 ITM2A 1 +chrX 79362553 79362768 ITM2A 1 +chrX 79362886 79363065 ITM2A 1 +chrX 79363403 79363615 ITM2A 1 +chrX 79367105 79367323 ITM2A 1 +chrX 80022231 80022449 TBX22 1 +chrX 80023112 80023297 TBX22 1 +chrX 80023941 80024138 TBX22 1 +chrX 80025559 80025759 TBX22 1 +chrX 80026670 80026900 TBX22 1 +chrX 80027148 80027354 TBX22 1 +chrX 80027912 80028103 TBX22 1 +chrX 80030409 80031172 TBX22 1 +chrX 80442511 80443804 TENT5D 1 +chrX 80571840 80571960 Intergenic_2628 1 +chrX 80676509 80677417 BRWD3 1 +chrX 80681307 80681519 BRWD3 1 +chrX 80681918 80682112 BRWD3 1 +chrX 80682416 80682616 BRWD3 1 +chrX 80684024 80684200 BRWD3 1 +chrX 80685413 80685595 BRWD3 1 +chrX 80686826 80687017 BRWD3 1 +chrX 80687939 80688127 BRWD3 1 +chrX 80689740 80690121 BRWD3 1 +chrX 80691027 80691212 BRWD3 1 +chrX 80691746 80692121 BRWD3 1 +chrX 80692898 80693092 BRWD3 1 +chrX 80695863 80696033 BRWD3 1 +chrX 80696694 80696897 BRWD3 1 +chrX 80699868 80700065 BRWD3 1 +chrX 80703409 80703621 BRWD3 1 +chrX 80704667 80704852 BRWD3 1 +chrX 80707397 80707579 BRWD3 1 +chrX 80709411 80709605 BRWD3 1 +chrX 80716067 80716270 BRWD3 1 +chrX 80717532 80717744 BRWD3 1 +chrX 80719502 80719693 BRWD3 1 +chrX 80722540 80722811 BRWD3 1 +chrX 80723741 80723938 BRWD3 1 +chrX 80724881 80725078 BRWD3 1 +chrX 80728743 80728928 BRWD3 1 +chrX 80729879 80730055 BRWD3 1 +chrX 80733300 80733506 BRWD3 1 +chrX 80734043 80734222 BRWD3 1 +chrX 80735073 80735261 BRWD3 1 +chrX 80735967 80736152 BRWD3 1 +chrX 80743999 80744294 BRWD3 1 +chrX 80745551 80745748 BRWD3 1 +chrX 80791802 80792002 BRWD3 1 +chrX 80793554 80793778 BRWD3 1 +chrX 80808414 80808620 BRWD3 1 +chrX 80808960 80809142 BRWD3 1 +chrX 80809224 80809563 BRWD3 1 +chrX 81114549 81115291 HMGN5 1 +chrX 81116175 81116360 HMGN5 1 +chrX 81118394 81118573 HMGN5 1 +chrX 81118629 81118805 HMGN5 1 +chrX 81119699 81119905 HMGN5 1 +chrX 81121528 81121746 HMGN5 1 +chrX 81202020 81202229 SH3BGRL 1 +chrX 81237045 81237227 SH3BGRL 1 +chrX 81277006 81277206 SH3BGRL 1 +chrX 81278285 81278464 SH3BGRL 1 +chrX 81297124 81297380 SH3BGRL 1 +chrX 83508260 83509509 POU3F4 1 +chrX 83861088 83861261 CYLC1 1 +chrX 83864655 83864852 CYLC1 1 +chrX 83869817 83870014 CYLC1 1 +chrX 83871392 83871571 CYLC1 1 +chrX 83872876 83874676 CYLC1 1 +chrX 83886505 83886690 CYLC1 1 +chrX 84064174 84064454 RPS6KA6 1 +chrX 84064904 84065119 RPS6KA6 1 +chrX 84096182 84096370 RPS6KA6 1 +chrX 84097721 84097912 RPS6KA6 1 +chrX 84101951 84102163 RPS6KA6 1 +chrX 84104489 84104674 RPS6KA6 1 +chrX 84105740 84105916 RPS6KA6 1 +chrX 84106307 84106489 RPS6KA6 1 +chrX 84106916 84107104 RPS6KA6 1 +chrX 84107588 84107764 RPS6KA6 1 +chrX 84116169 84116372 RPS6KA6 1 +chrX 84117018 84117191 RPS6KA6 1 +chrX 84117327 84117518 RPS6KA6 1 +chrX 84119846 84120040 RPS6KA6 1 +chrX 84134673 84134861 RPS6KA6 1 +chrX 84135059 84135253 RPS6KA6 1 +chrX 84145432 84145620 RPS6KA6 1 +chrX 84146956 84147132 RPS6KA6 1 +chrX 84148021 84148200 RPS6KA6 1 +chrX 84156011 84156205 RPS6KA6 1 +chrX 84164251 84164448 RPS6KA6 1 +chrX 84185985 84186161 RPS6KA6 1 +chrX 84187758 84187967 RPS6KA6 1 +chrX 84225725 84225922 MIR548I4 1 +chrX 84321788 84322059 HDX 1 +chrX 84326063 84326275 HDX 1 +chrX 84333766 84333954 HDX 1 +chrX 84336737 84336928 HDX 1 +chrX 84344238 84344465 HDX 1 +chrX 84361438 84361653 HDX 1 +chrX 84440398 84440589 HDX 1 +chrX 84468500 84469651 HDX 1 +chrX 84475193 84475378 HDX 1 +chrX 84934232 84934894 UBE2DNL 1 +chrX 85003836 85004024 APOOL 1 +chrX 85046216 85046490 APOOL 1 +chrX 85051423 85051593 APOOL 1 +chrX 85054345 85054521 APOOL 1 +chrX 85055850 85056020 APOOL 1 +chrX 85067147 85067332 APOOL 1 +chrX 85074040 85074486 APOOL 1 +chrX 85087545 85087801 APOOL 1 +chrX 85092279 85092580 APOOL 1 +chrX 85093119 85093292 APOOL 1 +chrX 85094114 85094308 SATL1 1 +chrX 85094864 85095058 SATL1 1 +chrX 85103765 85103953 SATL1 1 +chrX 85107371 85108051 SATL1 1 +chrX 85108121 85108771 SATL1 1 +chrX 85108841 85109029 SATL1 1 +chrX 85247438 85247632 ZNF711 1 +chrX 85255244 85255820 ZNF711 1 +chrX 85264258 85264446 ZNF711 1 +chrX 85265071 85265292 ZNF711 1 +chrX 85267252 85267461 ZNF711 1 +chrX 85268289 85268465 ZNF711 1 +chrX 85270019 85270207 ZNF711 1 +chrX 85270607 85271918 ZNF711 1 +chrX 85279208 85279479 POF1B 1 +chrX 85282176 85282373 POF1B 1 +chrX 85303361 85303540 POF1B 1 +chrX 85304243 85304449 POF1B 1 +chrX 85305756 85305950 POF1B 1 +chrX 85306201 85306389 POF1B 1 +chrX 85307089 85307280 POF1B 1 +chrX 85308072 85308266 POF1B 1 +chrX 85314332 85314523 POF1B 1 +chrX 85315623 85315808 POF1B 1 +chrX 85316094 85316267 POF1B 1 +chrX 85316469 85316654 POF1B 1 +chrX 85330925 85331107 POF1B 1 +chrX 85345787 85345975 POF1B 1 +chrX 85351348 85351560 POF1B 1 +chrX 85359534 85359704 POF1B 1 +chrX 85367574 85367774 POF1B 1 +chrX 85379086 85379461 POF1B 1 +chrX 85835787 85835990 MIR1321 1 +chrX 85864541 85864818 CHM 1 +chrX 85873001 85873210 CHM 1 +chrX 85878853 85879050 CHM 1 +chrX 85894135 85894320 CHM 1 +chrX 85900622 85900807 CHM 1 +chrX 85900996 85901205 CHM 1 +chrX 85903565 85903786 CHM 1 +chrX 85911214 85911384 CHM 1 +chrX 85956074 85956345 CHM 1 +chrX 85957859 85958032 CHM 1 +chrX 85958767 85958943 CHM 1 +chrX 85963689 85964129 CHM 1 +chrX 85978743 85978931 CHM 1 +chrX 85981636 85981827 CHM 1 +chrX 86027459 86027668 CHM 1 +chrX 86047475 86047690 CHM 1 +chrX 86148541 86149162 DACH2 1 +chrX 86376802 86377005 DACH2 1 +chrX 86512763 86512939 DACH2 1 +chrX 86514299 86514493 DACH2 1 +chrX 86651001 86651213 DACH2 1 +chrX 86694984 86695202 DACH2 1 +chrX 86714608 86714778 DACH2 1 +chrX 86739783 86739986 DACH2 1 +chrX 86742561 86742737 DACH2 1 +chrX 86812840 86813286 DACH2 1 +chrX 86814675 86814899 DACH2 1 +chrX 86816032 86816217 DACH2 1 +chrX 86827760 86827978 DACH2 1 +chrX 86831923 86832277 DACH2 1 +chrX 87517854 87518362 KLHL4 1 +chrX 87613860 87614069 KLHL4 1 +chrX 87614407 87614598 KLHL4 1 +chrX 87617914 87618141 KLHL4 1 +chrX 87622261 87622488 KLHL4 1 +chrX 87625632 87625838 KLHL4 1 +chrX 87632175 87632458 KLHL4 1 +chrX 87633720 87633926 KLHL4 1 +chrX 87635535 87635723 KLHL4 1 +chrX 87664707 87664934 KLHL4 1 +chrX 87666421 87666701 KLHL4 1 +chrX 87669156 87669566 KLHL4 1 +chrX 88753395 88754389 CPXCR1 1 +chrX 89922486 89922754 TGIF2LX 1 +chrX 91435520 91436834 PABPC5 1 +chrX 91815430 91815551 Intergenic_2629 1 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97114657 97114940 DIAPH2 1 +chrX 97141644 97141832 DIAPH2 1 +chrX 97247658 97247846 DIAPH2 1 +chrX 97348067 97348270 DIAPH2 1 +chrX 97383921 97384097 DIAPH2 1 +chrX 97429672 97429845 DIAPH2 1 +chrX 97469738 97469926 DIAPH2 1 +chrX 97599172 97599458 DIAPH2 1 +chrX 100296170 100296838 PCDH19 1 +chrX 100341813 100342034 PCDH19 1 +chrX 100350628 100350840 PCDH19 1 +chrX 100402582 100402927 PCDH19 1 +chrX 100403568 100403762 PCDH19 1 +chrX 100406357 100408705 PCDH19 1 +chrX 100584968 100585331 TNMD 1 +chrX 100593861 100594064 TNMD 1 +chrX 100594181 100594378 TNMD 1 +chrX 100597529 100597732 TNMD 1 +chrX 100598938 100599123 TNMD 1 +chrX 100599496 100599785 TNMD 1 +chrX 100630680 100630880 TSPAN6 1 +chrX 100632435 100632620 TSPAN6 1 +chrX 100633335 100633541 TSPAN6 1 +chrX 100633894 100634070 TSPAN6 1 +chrX 100635114 100635308 TSPAN6 1 +chrX 100635515 100635709 TSPAN6 1 +chrX 100636554 100636733 TSPAN6 1 +chrX 100646151 100646333 SRPX2 1 +chrX 100650673 100650849 SRPX2 1 +chrX 100662102 100662308 SRPX2 1 +chrX 100664746 100664916 SRPX2 1 +chrX 100665265 100665696 SRPX2 1 +chrX 100666668 100666868 SRPX2 1 +chrX 100667270 100667479 SRPX2 1 +chrX 100669148 100669342 SRPX2 1 +chrX 100670830 100671095 SRPX2 1 +chrX 100675914 100676206 SYTL4 1 +chrX 100678451 100678660 SYTL4 1 +chrX 100679190 100679387 SYTL4 1 +chrX 100681198 100681416 SYTL4 1 +chrX 100685933 100686219 SYTL4 1 +chrX 100686579 100686927 SYTL4 1 +chrX 100686973 100687330 SYTL4 1 +chrX 100688164 100688539 SYTL4 1 +chrX 100689806 100690148 SYTL4 1 +chrX 100690545 100690763 SYTL4 1 +chrX 100691124 100691321 SYTL4 1 +chrX 100700838 100701059 SYTL4 1 +chrX 100701181 100701648 SYTL4 1 +chrX 100701976 100702173 SYTL4 1 +chrX 100820432 100820733 CSTF2 1 +chrX 100821495 100821707 CSTF2 1 +chrX 100822175 100822360 CSTF2 1 +chrX 100823310 100823513 CSTF2 1 +chrX 100823825 100824176 CSTF2 1 +chrX 100826532 100826720 CSTF2 1 +chrX 100827955 100828173 CSTF2 1 +chrX 100830665 100830880 CSTF2 1 +chrX 100831560 100831745 CSTF2 1 +chrX 100832649 100832864 CSTF2 1 +chrX 100833113 100833417 CSTF2 1 +chrX 100837278 100837508 CSTF2 1 +chrX 100838218 100838445 CSTF2 1 +chrX 100843339 100843563 NOX1 1 +chrX 100843831 100844096 NOX1 1 +chrX 100848594 100848791 NOX1 1 +chrX 100849192 100849377 NOX1 1 +chrX 100849692 100849892 NOX1 1 +chrX 100850155 100850429 NOX1 1 +chrX 100851178 100851384 NOX1 1 +chrX 100862224 100862898 NOX1 1 +chrX 100863061 100863264 NOX1 1 +chrX 100863367 100863564 NOX1 1 +chrX 100870630 100870833 NOX1 1 +chrX 100874066 100874272 NOX1 1 +chrX 100914250 100915099 XKRX 1 +chrX 100922714 100922991 XKRX 1 +chrX 100927930 100928355 XKRX 1 +chrX 100973656 100973838 ARL13A 1 +chrX 100973992 100974192 ARL13A 1 +chrX 100985696 100985985 ARL13A 1 +chrX 100986724 100986918 ARL13A 1 +chrX 100987405 100987593 ARL13A 1 +chrX 100988195 100988555 ARL13A 1 +chrX 100989126 100989308 ARL13A 1 +chrX 100990473 100990673 ARL13A 1 +chrX 101010434 101010744 TRMT2B 1 +chrX 101013715 101013835 TRMT2B 1 +chrX 101018932 101019123 TRMT2B 1 +chrX 101019318 101019491 TRMT2B 1 +chrX 101020422 101020649 TRMT2B 1 +chrX 101021137 101021337 TRMT2B 1 +chrX 101021977 101022177 TRMT2B 1 +chrX 101023517 101023699 TRMT2B 1 +chrX 101035517 101035714 TRMT2B 1 +chrX 101036863 101037063 TRMT2B 1 +chrX 101037847 101038065 TRMT2B 1 +chrX 101041207 101041416 TRMT2B 1 +chrX 101042083 101042390 TRMT2B 1 +chrX 101078875 101079081 TMEM35A 1 +chrX 101094522 101095036 TMEM35A 1 +chrX 101101034 101101305 CENPI 1 +chrX 101102284 101102457 CENPI 1 +chrX 101109428 101109637 CENPI 1 +chrX 101109808 101110026 CENPI 1 +chrX 101120256 101120459 CENPI 1 +chrX 101120675 101120866 CENPI 1 +chrX 101126668 101126838 CENPI 1 +chrX 101127056 101127241 CENPI 1 +chrX 101127409 101127606 CENPI 1 +chrX 101128672 101128860 CENPI 1 +chrX 101129972 101130145 CENPI 1 +chrX 101132257 101132519 CENPI 1 +chrX 101140635 101140930 CENPI 1 +chrX 101145100 101145279 CENPI 1 +chrX 101146126 101146323 CENPI 1 +chrX 101147798 101148229 CENPI 1 +chrX 101161508 101161702 CENPI 1 +chrX 101162817 101163082 CENPI 1 +chrX 101231527 101231706 DRP2 1 +chrX 101235913 101236095 DRP2 1 +chrX 101237533 101237721 DRP2 1 +chrX 101238892 101239068 DRP2 1 +chrX 101241730 101242010 DRP2 1 +chrX 101242249 101242431 DRP2 1 +chrX 101242793 101242975 DRP2 1 +chrX 101244892 101245086 DRP2 1 +chrX 101245267 101245473 DRP2 1 +chrX 101246966 101247160 DRP2 1 +chrX 101248023 101248220 DRP2 1 +chrX 101248432 101248620 DRP2 1 +chrX 101250473 101250676 DRP2 1 +chrX 101250974 101251153 DRP2 1 +chrX 101252521 101252730 DRP2 1 +chrX 101254374 101254559 DRP2 1 +chrX 101254734 101254940 DRP2 1 +chrX 101255113 101255313 DRP2 1 +chrX 101256164 101256364 DRP2 1 +chrX 101258272 101258567 DRP2 1 +chrX 101259933 101260136 DRP2 1 +chrX 101260538 101260744 DRP2 1 +chrX 101269037 101269305 TAF7L 1 +chrX 101275085 101275285 TAF7L 1 +chrX 101275901 101276101 TAF7L 1 +chrX 101276208 101276497 TAF7L 1 +chrX 101277505 101277690 TAF7L 1 +chrX 101277921 101278130 TAF7L 1 +chrX 101278845 101279054 TAF7L 1 +chrX 101281629 101281802 TAF7L 1 +chrX 101282274 101282486 TAF7L 1 +chrX 101283443 101283652 TAF7L 1 +chrX 101286546 101286740 TAF7L 1 +chrX 101287445 101287710 TAF7L 1 +chrX 101292851 101293119 TAF7L 1 +chrX 101346616 101346736 TIMM8A 1 +chrX 101348392 101348761 TIMM8A 1 +chrX 101349717 101349917 BTK 1 +chrX 101353160 101353378 BTK 1 +chrX 101353783 101353959 BTK 1 +chrX 101354507 101354686 BTK 1 +chrX 101356086 101356369 BTK 1 +chrX 101356703 101356903 BTK 1 +chrX 101357490 101357696 BTK 1 +chrX 101358303 101358743 BTK 1 +chrX 101359144 101359356 BTK 1 +chrX 101360030 101360215 BTK 1 +chrX 101360561 101360764 BTK 1 +chrX 101362031 101362240 BTK 1 +chrX 101362464 101362649 BTK 1 +chrX 101369959 101370171 BTK 1 +chrX 101371596 101371793 BTK 1 +chrX 101374475 101374669 BTK 1 +chrX 101375121 101375327 BTK 1 +chrX 101390368 101390541 BTK 1 +chrX 101390821 101391000 RPL36A 1 +chrX 101391566 101391686 RPL36A 1 +chrX 101391780 101391965 RPL36A 1 +chrX 101391968 101392156 RPL36A 1 +chrX 101395435 101395709 RPL36A 1 +chrX 101395776 101395896 RPL36A 1 +chrX 101397754 101398016 GLA 1 +chrX 101398416 101398628 GLA 1 +chrX 101398774 101398950 GLA 1 +chrX 101400599 101400802 GLA 1 +chrX 101401476 101401741 GLA 1 +chrX 101403788 101404012 GLA 1 +chrX 101407647 101407841 GLA 1 +chrX 101411862 101412779 HNRNPH2 1 +chrX 101412849 101412969 HNRNPH2 1 +chrX 101413009 101413182 HNRNPH2 1 +chrX 101413246 101413437 HNRNPH2 1 +chrX 101487489 101487686 ARMCX4 1 +chrX 101487920 101488108 ARMCX4 1 +chrX 101488470 101491212 ARMCX4 1 +chrX 101491270 101494006 ARMCX4 1 +chrX 101494070 101495520 ARMCX4 1 +chrX 101498080 101498280 ARMCX4 1 +chrX 101552834 101554400 ARMCX1 1 +chrX 101597511 101597631 Intergenic_2630 1 +chrX 101616157 101616647 ARMCX6 1 +chrX 101624895 101626218 ARMCX3 1 +chrX 101655556 101657682 ARMCX2 1 +chrX 101832091 101832276 NXF5 1 +chrX 101836163 101836357 NXF5 1 +chrX 101836721 101836897 NXF5 1 +chrX 101837495 101837825 NXF5 1 +chrX 101841770 101841890 NXF5 1 +chrX 101841930 101842050 NXF5 1 +chrX 101842714 101842914 NXF5 1 +chrX 101883461 101884834 ZMAT1 1 +chrX 101886569 101886766 ZMAT1 1 +chrX 101897815 101898160 ZMAT1 1 +chrX 101904149 101904337 ZMAT1 1 +chrX 101918627 101918747 ZMAT1 1 +chrX 102126842 102127623 TCEAL2 1 +chrX 102153804 102154321 BEX5 1 +chrX 102182260 102182439 Intergenic_2631 1 +chrX 102184702 102184822 Intergenic_2632 1 +chrX 102513940 102514060 TMSB15A 1 +chrX 102515071 102515265 TMSB15A 1 +chrX 102602034 102603884 ARMCX5 1 +chrX 102653849 102657403 GPRASP1 1 +chrX 102657473 102658144 GPRASP1 1 +chrX 102714817 102716679 GPRASP2 1 +chrX 102716749 102717488 GPRASP2 1 +chrX 102748924 102750214 BHLHB9 1 +chrX 102750275 102750709 BHLHB9 1 +chrX 102887812 102887932 LINC00630 1 +chrX 102919173 102919346 LINC00630 1 +chrX 102937230 102937350 RAB40AL 1 +chrX 102937390 102937510 RAB40AL 1 +chrX 102938012 102938135 RAB40AL 1 +chrX 102938140 102938260 RAB40AL 1 +chrX 103062749 103062949 BEX1 1 +chrX 103063099 103063373 BEX1 1 +chrX 103065465 103065680 Intergenic_2633 1 +chrX 103065750 103065950 Intergenic_2634 1 +chrX 103076246 103076431 NXF3 1 +chrX 103077018 103077218 NXF3 1 +chrX 103077525 103077713 NXF3 1 +chrX 103078620 103078740 NXF3 1 +chrX 103079426 103079795 NXF3 1 +chrX 103079850 103080284 NXF3 1 +chrX 103080451 103080657 NXF3 1 +chrX 103082170 103082373 NXF3 1 +chrX 103082705 103083613 NXF3 1 +chrX 103084387 103084581 NXF3 1 +chrX 103084743 103084922 NXF3 1 +chrX 103092977 103093201 NXF3 1 +chrX 103216145 103216582 BEX4 1 +chrX 103241628 103241819 Intergenic_2635 1 +chrX 103253585 103254010 TCEAL8 1 +chrX 103273832 103274005 TCEAL5 1 +chrX 103274285 103274675 TCEAL5 1 +chrX 103309448 103309648 BEX2 1 +chrX 103309718 103310075 BEX2 1 +chrX 103310382 103310680 BEX2 1 +chrX 103331276 103331799 TCEAL7 1 +chrX 103357591 103358102 TCEAL9 1 +chrX 103377454 103377909 BEX3 1 +chrX 103499942 103500062 RAB40A 1 +chrX 103500517 103500702 RAB40A 1 +chrX 103500754 103500874 RAB40A 1 +chrX 103576313 103576486 TCEAL4 1 +chrX 103577020 103577226 TCEAL4 1 +chrX 103585547 103585720 TCEAL4 1 +chrX 103586705 103587213 TCEAL4 1 +chrX 103587283 103587403 TCEAL4 1 +chrX 103609657 103609777 TCEAL3 1 +chrX 103629836 103630516 TCEAL1 1 +chrX 103676018 103677092 MORF4L2 1 +chrX 103707240 103707446 GLRA4 1 +chrX 103712174 103712353 GLRA4 1 +chrX 103713557 103714092 GLRA4 1 +chrX 103718876 103719251 GLRA4 1 +chrX 103722052 103722252 GLRA4 1 +chrX 103723843 103724289 GLRA4 1 +chrX 103724399 103724599 GLRA4 1 +chrX 103724843 103725016 GLRA4 1 +chrX 103726502 103726681 GLRA4 1 +chrX 103728085 103728362 GLRA4 1 +chrX 103776840 103777067 PLP1 1 +chrX 103781274 103781465 PLP1 1 +chrX 103785646 103785834 PLP1 1 +chrX 103786174 103786377 PLP1 1 +chrX 103786400 103786680 PLP1 1 +chrX 103787853 103788044 PLP1 1 +chrX 103788445 103788627 PLP1 1 +chrX 103789244 103789435 PLP1 1 +chrX 103790452 103790738 PLP1 1 +chrX 103825064 103825839 RAB9B 1 +chrX 103928222 103928341 TMSB15B 1 +chrX 103964495 103964737 TMSB15B 1 +chrX 103965504 103965728 TMSB15B 1 +chrX 104012694 104012879 H2BFWT 1 +chrX 104013147 104013320 H2BFWT 1 +chrX 104013384 104013800 H2BFWT 1 +chrX 104019536 104019736 Intergenic_2636 1 +chrX 104039861 104040156 H2BFM 1 +chrX 104040199 104040378 H2BFM 1 +chrX 104040831 104041028 H2BFM 1 +chrX 104104276 104104968 SLC25A53 1 +chrX 104105011 104105371 SLC25A53 1 +chrX 104114169 104115385 ZCCHC18 1 +chrX 104166746 104167026 FAM199X 1 +chrX 104175562 104175836 FAM199X 1 +chrX 104186043 104186237 FAM199X 1 +chrX 104186446 104186625 FAM199X 1 +chrX 104188095 104188366 FAM199X 1 +chrX 104189541 104189818 FAM199X 1 +chrX 104250121 104250315 ESX1 1 +chrX 104250545 104250896 ESX1 1 +chrX 104252666 104252872 ESX1 1 +chrX 104254160 104254603 ESX1 1 +chrX 104254698 104254883 ESX1 1 +chrX 104658839 104659045 IL1RAPL2 1 +chrX 105195540 105195799 IL1RAPL2 1 +chrX 105218909 105219777 TEX13A 1 +chrX 105219890 105220380 TEX13A 1 +chrX 105233813 105234016 IL1RAPL2 1 +chrX 105267367 105267555 IL1RAPL2 1 +chrX 105484267 105484485 IL1RAPL2 1 +chrX 105717403 105717585 IL1RAPL2 1 +chrX 105740527 105740709 IL1RAPL2 1 +chrX 105748919 105749131 IL1RAPL2 1 +chrX 105755167 105755361 IL1RAPL2 1 +chrX 105766866 105767789 IL1RAPL2 1 +chrX 105822666 105822869 NRK 1 +chrX 105831048 105831260 NRK 1 +chrX 105880135 105880323 NRK 1 +chrX 105881666 105881881 NRK 1 +chrX 105888240 105888452 NRK 1 +chrX 105893774 105893974 NRK 1 +chrX 105895203 105895504 NRK 1 +chrX 105898566 105898778 NRK 1 +chrX 105900598 105900813 NRK 1 +chrX 105905212 105905400 NRK 1 +chrX 105906340 105906531 NRK 1 +chrX 105908194 105908388 NRK 1 +chrX 105908771 105909928 NRK 1 +chrX 105912609 105912809 NRK 1 +chrX 105915647 105915820 NRK 1 +chrX 105917509 105917730 NRK 1 +chrX 105921890 105922087 NRK 1 +chrX 105923074 105923404 NRK 1 +chrX 105924637 105925024 NRK 1 +chrX 105934310 105934510 NRK 1 +chrX 105935098 105935298 NRK 1 +chrX 105937418 105937600 NRK 1 +chrX 105939867 105940052 NRK 1 +chrX 105943935 105944117 NRK 1 +chrX 105945827 105946045 NRK 1 +chrX 105946303 105946488 NRK 1 +chrX 105948611 105948808 NRK 1 +chrX 105949550 105949750 NRK 1 +chrX 105952990 105953208 NRK 1 +chrX 105955461 105955714 NRK 1 +chrX 106033470 106033655 SERPINA7 1 +chrX 106034211 106034393 SERPINA7 1 +chrX 106035167 106035432 SERPINA7 1 +chrX 106036354 106037200 SERPINA7 1 +chrX 106205339 106207604 MUM1L1 1 +chrX 106612037 106612779 CXorf57 1 +chrX 106622630 106622806 CXorf57 1 +chrX 106625055 106625243 CXorf57 1 +chrX 106632614 106632799 CXorf57 1 +chrX 106632911 106633259 CXorf57 1 +chrX 106636533 106636712 CXorf57 1 +chrX 106637718 106637980 CXorf57 1 +chrX 106639485 106639833 CXorf57 1 +chrX 106640542 106640733 CXorf57 1 +chrX 106648264 106648434 CXorf57 1 +chrX 106661986 106662269 CXorf57 1 +chrX 106669092 106669271 CXorf57 1 +chrX 106678072 106678328 CXorf57 1 +chrX 106693906 106694411 RNF128 1 +chrX 106726782 106727465 RNF128 1 +chrX 106772908 106773170 RNF128 1 +chrX 106785030 106785221 RNF128 1 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107147646 107147843 NUP62CL 1 +chrX 107150778 107150972 NUP62CL 1 +chrX 107153142 107153493 NUP62CL 1 +chrX 107154070 107154267 NUP62CL 1 +chrX 107167631 107167816 NUP62CL 1 +chrX 107175000 107175224 NUP62CL 1 +chrX 107212911 107213114 PIH1D3 1 +chrX 107216606 107216809 PIH1D3 1 +chrX 107218762 107218962 PIH1D3 1 +chrX 107222734 107222928 PIH1D3 1 +chrX 107238876 107239055 PIH1D3 1 +chrX 107243134 107243414 PIH1D3 1 +chrX 107522290 107522490 FRMPD3 1 +chrX 107525465 107525677 FRMPD3 1 +chrX 107526501 107526692 FRMPD3 1 +chrX 107530395 107530574 FRMPD3 1 +chrX 107533378 107533554 FRMPD3 1 +chrX 107545613 107545816 FRMPD3 1 +chrX 107549986 107550168 FRMPD3 1 +chrX 107552834 107553016 FRMPD3 1 +chrX 107554400 107554603 FRMPD3 1 +chrX 107560155 107560376 FRMPD3 1 +chrX 107560614 107560814 FRMPD3 1 +chrX 107562985 107563194 FRMPD3 1 +chrX 107564941 107565150 FRMPD3 1 +chrX 107576214 107576414 FRMPD3 1 +chrX 107597265 107598111 FRMPD3 1 +chrX 107600264 107603445 FRMPD3 1 +chrX 107628494 107628614 PRPS1 1 +chrX 107639355 107639561 PRPS1 1 +chrX 107640946 107641208 PRPS1 1 +chrX 107642390 107642584 PRPS1 1 +chrX 107645238 107645435 PRPS1 1 +chrX 107647642 107647848 PRPS1 1 +chrX 107649866 107650170 PRPS1 1 +chrX 107714376 107714825 TSC22D3 1 +chrX 107715698 107716034 TSC22D3 1 +chrX 107716709 107716909 TSC22D3 1 +chrX 107721839 107722030 TSC22D3 1 +chrX 107775054 107775473 TSC22D3 1 +chrX 107794226 107794728 NCBP2L 1 +chrX 107826286 107826406 MID2 1 +chrX 107840693 107841474 MID2 1 +chrX 107854616 107854825 MID2 1 +chrX 107903920 107904123 MID2 1 +chrX 107905448 107905651 MID2 1 +chrX 107915920 107916117 MID2 1 +chrX 107917443 107917723 MID2 1 +chrX 107924263 107924457 MID2 1 +chrX 107926079 107926258 MID2 1 +chrX 107926625 107927163 MID2 1 +chrX 107980951 107982102 TEX13B 1 +chrX 108045039 108045239 VSIG1 1 +chrX 108058004 108058216 VSIG1 1 +chrX 108061375 108061581 VSIG1 1 +chrX 108066904 108067095 VSIG1 1 +chrX 108072618 108072836 VSIG1 1 +chrX 108073176 108073382 VSIG1 1 +chrX 108076008 108076202 VSIG1 1 +chrX 108077075 108077450 VSIG1 1 +chrX 108084892 108085202 PSMD10 1 +chrX 108087746 108087996 PSMD10 1 +chrX 108088066 108088186 PSMD10 1 +chrX 108088585 108088770 PSMD10 1 +chrX 108091476 108091916 ATG4A 1 +chrX 108126103 108126300 ATG4A 1 +chrX 108126678 108126866 ATG4A 1 +chrX 108128788 108128982 ATG4A 1 +chrX 108131283 108131474 ATG4A 1 +chrX 108134101 108134479 ATG4A 1 +chrX 108137006 108137206 ATG4A 1 +chrX 108137768 108138223 ATG4A 1 +chrX 108150121 108150312 ATG4A 1 +chrX 108151672 108151860 ATG4A 1 +chrX 108152869 108153069 ATG4A 1 +chrX 108153666 108153878 ATG4A 1 +chrX 108156914 108157185 COL4A6 1 +chrX 108159508 108159948 COL4A6 1 +chrX 108160506 108160733 COL4A6 1 +chrX 108161507 108161716 COL4A6 1 +chrX 108162939 108163136 COL4A6 1 +chrX 108164523 108164993 COL4A6 1 +chrX 108165402 108165593 COL4A6 1 +chrX 108169457 108169657 COL4A6 1 +chrX 108169955 108170152 COL4A6 1 +chrX 108170654 108170990 COL4A6 1 +chrX 108171368 108171550 COL4A6 1 +chrX 108172376 108172555 COL4A6 1 +chrX 108174379 108174555 COL4A6 1 +chrX 108175049 108175255 COL4A6 1 +chrX 108175691 108175876 COL4A6 1 +chrX 108176891 108177070 COL4A6 1 +chrX 108178739 108178924 COL4A6 1 +chrX 108179127 108179410 COL4A6 1 +chrX 108180456 108180680 COL4A6 1 +chrX 108180901 108181083 COL4A6 1 +chrX 108187141 108187359 COL4A6 1 +chrX 108187894 108188106 COL4A6 1 +chrX 108188571 108188753 COL4A6 1 +chrX 108190415 108190588 COL4A6 1 +chrX 108191290 108191487 COL4A6 1 +chrX 108192495 108192692 COL4A6 1 +chrX 108193562 108193762 COL4A6 1 +chrX 108194453 108194656 COL4A6 1 +chrX 108194976 108195179 COL4A6 1 +chrX 108196489 108196674 COL4A6 1 +chrX 108202809 108202979 COL4A6 1 +chrX 108204329 108204609 COL4A6 1 +chrX 108205378 108205646 COL4A6 1 +chrX 108206418 108206870 COL4A6 1 +chrX 108209880 108210083 COL4A6 1 +chrX 108211650 108211850 COL4A6 1 +chrX 108214015 108214197 COL4A6 1 +chrX 108219559 108219750 COL4A6 1 +chrX 108221093 108221361 COL4A6 1 +chrX 108269071 108269280 COL4A6 1 +chrX 108310672 108310902 COL4A6 1 +chrX 108383353 108383950 COL4A6 1 +chrX 108437792 108437992 COL4A6 1 +chrX 108438241 108438361 COL4A6 1 +chrX 108439370 108439490 COL4A6 1 +chrX 108439950 108440218 COL4A5 1 +chrX 108539675 108539863 COL4A5 1 +chrX 108558963 108559133 COL4A5 1 +chrX 108563815 108564000 COL4A5 1 +chrX 108568681 108568893 COL4A5 1 +chrX 108571330 108571536 COL4A5 1 +chrX 108571738 108571923 COL4A5 1 +chrX 108573510 108573716 COL4A5 1 +chrX 108575840 108576046 COL4A5 1 +chrX 108577950 108578390 COL4A5 1 +chrX 108580568 108580780 COL4A5 1 +chrX 108580934 108581137 COL4A5 1 +chrX 108582780 108582986 COL4A5 1 +chrX 108584401 108584604 COL4A5 1 +chrX 108586595 108586822 COL4A5 1 +chrX 108590984 108591169 COL4A5 1 +chrX 108591496 108591714 COL4A5 1 +chrX 108595472 108595687 COL4A5 1 +chrX 108596977 108597153 COL4A5 1 +chrX 108597309 108597512 COL4A5 1 +chrX 108598706 108598927 COL4A5 1 +chrX 108601320 108601517 COL4A5 1 +chrX 108601851 108602075 COL4A5 1 +chrX 108602897 108603121 COL4A5 1 +chrX 108606650 108606841 COL4A5 1 +chrX 108614858 108615082 COL4A5 1 +chrX 108620230 108620454 COL4A5 1 +chrX 108621741 108621962 COL4A5 1 +chrX 108622635 108622865 COL4A5 1 +chrX 108624169 108624399 COL4A5 1 +chrX 108625613 108625834 COL4A5 1 +chrX 108626138 108626492 COL4A5 1 +chrX 108655368 108655553 COL4A5 1 +chrX 108665431 108665646 COL4A5 1 +chrX 108666429 108666653 COL4A5 1 +chrX 108667054 108667245 COL4A5 1 +chrX 108668260 108668442 COL4A5 1 +chrX 108670140 108670316 COL4A5 1 +chrX 108670563 108670754 COL4A5 1 +chrX 108674651 108674836 COL4A5 1 +chrX 108677411 108677587 COL4A5 1 +chrX 108680602 108680882 COL4A5 1 +chrX 108681654 108681851 COL4A5 1 +chrX 108685925 108686104 COL4A5 1 +chrX 108687553 108687738 COL4A5 1 +chrX 108692718 108692894 COL4A5 1 +chrX 108694835 108695014 COL4A5 1 +chrX 108695324 108695521 COL4A5 1 +chrX 108696269 108696546 COL4A5 1 +chrX 108732494 108736371 IRS4 1 +chrX 109375964 109376220 GUCY2F 1 +chrX 109382064 109382267 GUCY2F 1 +chrX 109385204 109385398 GUCY2F 1 +chrX 109388538 109388747 GUCY2F 1 +chrX 109391878 109392060 GUCY2F 1 +chrX 109392834 109393037 GUCY2F 1 +chrX 109395344 109395556 GUCY2F 1 +chrX 109398559 109398756 GUCY2F 1 +chrX 109404281 109404481 GUCY2F 1 +chrX 109409015 109409200 GUCY2F 1 +chrX 109430281 109430496 GUCY2F 1 +chrX 109441304 109441531 GUCY2F 1 +chrX 109448037 109448231 GUCY2F 1 +chrX 109451889 109452119 GUCY2F 1 +chrX 109453573 109453924 GUCY2F 1 +chrX 109465160 109465520 GUCY2F 1 +chrX 109475228 109475991 GUCY2F 1 +chrX 109535824 109536021 NXT2 1 +chrX 109536801 109536998 NXT2 1 +chrX 109538053 109538247 NXT2 1 +chrX 109541455 109541652 NXT2 1 +chrX 109542437 109542782 NXT2 1 +chrX 109624502 109625099 KCNE5 1 +chrX 109643891 109644233 ACSL4 1 +chrX 109659332 109659523 ACSL4 1 +chrX 109661499 109661681 ACSL4 1 +chrX 109663200 109663406 ACSL4 1 +chrX 109665362 109665559 ACSL4 1 +chrX 109668071 109668301 ACSL4 1 +chrX 109668982 109669158 ACSL4 1 +chrX 109674334 109674522 ACSL4 1 +chrX 109677921 109678352 ACSL4 1 +chrX 109680975 109681397 ACSL4 1 +chrX 109682722 109682892 ACSL4 1 +chrX 109683142 109683579 ACSL4 1 +chrX 110003648 110004239 TMEM164 1 +chrX 110055208 110055408 MIR652 1 +chrX 110067262 110067486 TMEM164 1 +chrX 110082124 110082327 TMEM164 1 +chrX 110108949 110109137 TMEM164 1 +chrX 110144661 110144867 TMEM164 1 +chrX 110171444 110171641 TMEM164 1 +chrX 110173200 110173501 TMEM164 1 +chrX 110175849 110176452 TMEM164 1 +chrX 110198410 110198681 AMMECR1 1 +chrX 110200916 110201101 AMMECR1 1 +chrX 110202405 110202581 AMMECR1 1 +chrX 110216492 110216698 AMMECR1 1 +chrX 110224999 110225169 AMMECR1 1 +chrX 110264452 110264628 AMMECR1 1 +chrX 110317532 110318188 AMMECR1 1 +chrX 110346857 110346977 AMMECR1 1 +chrX 110450616 110454751 RTL9 1 +chrX 110455117 110455412 RTL9 1 +chrX 110676086 110676378 CHRDL1 1 +chrX 110679214 110679408 CHRDL1 1 +chrX 110681536 110681721 CHRDL1 1 +chrX 110688526 110688735 CHRDL1 1 +chrX 110694221 110694400 CHRDL1 1 +chrX 110700515 110700739 CHRDL1 1 +chrX 110719854 110720033 CHRDL1 1 +chrX 110721392 110721592 CHRDL1 1 +chrX 110759676 110759867 CHRDL1 1 +chrX 110762680 110762868 CHRDL1 1 +chrX 110792092 110792277 CHRDL1 1 +chrX 111123020 111123202 PAK3 1 +chrX 111142042 111142257 PAK3 1 +chrX 111144787 111144990 PAK3 1 +chrX 111146388 111146576 PAK3 1 +chrX 111147722 111147913 PAK3 1 +chrX 111152334 111152525 PAK3 1 +chrX 111162883 111163089 PAK3 1 +chrX 111163544 111163750 PAK3 1 +chrX 111172919 111173104 PAK3 1 +chrX 111178182 111178382 PAK3 1 +chrX 111189789 111189971 PAK3 1 +chrX 111192080 111192280 PAK3 1 +chrX 111192428 111192616 PAK3 1 +chrX 111194280 111194501 PAK3 1 +chrX 111195803 111195982 PAK3 1 +chrX 111196510 111196701 PAK3 1 +chrX 111216386 111216598 PAK3 1 +chrX 111217421 111217651 PAK3 1 +chrX 111220302 111220582 PAK3 1 +chrX 111246476 111246685 CAPN6 1 +chrX 111247290 111247493 CAPN6 1 +chrX 111247816 111248040 CAPN6 1 +chrX 111248621 111249132 CAPN6 1 +chrX 111250966 111251314 CAPN6 1 +chrX 111251605 111251820 CAPN6 1 +chrX 111252275 111252457 CAPN6 1 +chrX 111253059 111253274 CAPN6 1 +chrX 111254204 111254419 CAPN6 1 +chrX 111263805 111263987 CAPN6 1 +chrX 111301531 111301805 DCX 1 +chrX 111312528 111312716 DCX 1 +chrX 111330797 111331000 DCX 1 +chrX 111333001 111333195 DCX 1 +chrX 111400964 111401345 DCX 1 +chrX 111409932 111410402 DCX 1 +chrX 111410704 111411049 DCX 1 +chrX 111681115 111681309 ALG13 1 +chrX 111682148 111682333 ALG13 1 +chrX 111684945 111685127 ALG13 1 +chrX 111686078 111686260 ALG13 1 +chrX 111687810 111688093 ALG13 1 +chrX 111708101 111708437 ALG13 1 +chrX 111708896 111709105 ALG13 1 +chrX 111711626 111711820 ALG13 1 +chrX 111712481 111712660 ALG13 1 +chrX 111713170 111713361 ALG13 1 +chrX 111717848 111718054 ALG13 1 +chrX 111718149 111718355 ALG13 1 +chrX 111720007 111720213 ALG13 1 +chrX 111721553 111721744 ALG13 1 +chrX 111722652 111722867 ALG13 1 +chrX 111723702 111723878 ALG13 1 +chrX 111724914 111725132 ALG13 1 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112790723 AMOT 1 +chrX 112791881 112792081 AMOT 1 +chrX 112804994 112805185 AMOT 1 +chrX 112809911 112810093 AMOT 1 +chrX 112811295 112811471 AMOT 1 +chrX 112815281 112815819 AMOT 1 +chrX 112822290 112823234 AMOT 1 +chrX 113347534 113347648 LOC101928437 1 +chrX 114630835 114631014 HTR2C 1 +chrX 114639331 114639540 HTR2C 1 +chrX 114651483 114651668 HTR2C 1 +chrX 114652651 114652833 HTR2C 1 +chrX 114715188 114715394 HTR2C 1 +chrX 114726842 114727033 HTR2C 1 +chrX 114731273 114731633 HTR2C 1 +chrX 114763060 114763269 HTR2C 1 +chrX 114823462 114823677 HTR2C 1 +chrX 114847960 114848163 HTR2C 1 +chrX 114906538 114907467 HTR2C 1 +chrX 115004001 115004216 IL13RA2 1 +chrX 115005119 115005322 IL13RA2 1 +chrX 115007912 115008112 IL13RA2 1 +chrX 115009514 115009723 IL13RA2 1 +chrX 115010671 115010856 IL13RA2 1 +chrX 115013788 115013985 IL13RA2 1 +chrX 115014397 115014606 IL13RA2 1 +chrX 115015588 115015791 IL13RA2 1 +chrX 115017152 115017322 IL13RA2 1 +chrX 115113102 115113379 LRCH2 1 +chrX 115122567 115122912 LRCH2 1 +chrX 115123029 115123241 LRCH2 1 +chrX 115123801 115124004 LRCH2 1 +chrX 115126749 115126937 LRCH2 1 +chrX 115130073 115130273 LRCH2 1 +chrX 115149793 115150070 LRCH2 1 +chrX 115156534 115156719 LRCH2 1 +chrX 115163662 115163862 LRCH2 1 +chrX 115165461 115165720 LRCH2 1 +chrX 115165778 115165960 LRCH2 1 +chrX 115166192 115166383 LRCH2 1 +chrX 115170244 115170423 LRCH2 1 +chrX 115179429 115179801 LRCH2 1 +chrX 115184373 115184567 LRCH2 1 +chrX 115188212 115188382 LRCH2 1 +chrX 115189422 115191192 LRCH2 1 +chrX 115191327 115191447 LRCH2 1 +chrX 115191502 115191752 LRCH2 1 +chrX 115191822 115192730 LRCH2 1 +chrX 115233710 115234162 LRCH2 1 +chrX 115289734 115289904 LUZP4 1 +chrX 115302002 115302178 LUZP4 1 +chrX 115303222 115303437 LUZP4 1 +chrX 115306125 115306464 LUZP4 1 +chrX 115306685 115306867 LUZP4 1 +chrX 115610195 115610374 PLS3 1 +chrX 115610802 115611014 PLS3 1 +chrX 115614233 115614353 PLS3 1 +chrX 115622212 115622382 PLS3 1 +chrX 115629189 115629386 PLS3 1 +chrX 115629845 115630015 PLS3 1 +chrX 115634012 115634188 PLS3 1 +chrX 115634818 115635042 PLS3 1 +chrX 115636803 115637009 PLS3 1 +chrX 115639634 115639843 PLS3 1 +chrX 115639962 115640150 PLS3 1 +chrX 115640328 115640519 PLS3 1 +chrX 115643298 115643519 PLS3 1 +chrX 115644992 115645174 PLS3 1 +chrX 115646013 115646186 PLS3 1 +chrX 115646356 115646583 PLS3 1 +chrX 115647466 115647696 PLS3 1 +chrX 115647920 115648108 PLS3 1 +chrX 115649389 115649678 PLS3 1 +chrX 116172174 116173473 AGTR2 1 +chrX 116436620 116436835 SLC6A14 1 +chrX 116437736 116437936 SLC6A14 1 +chrX 116440937 116441119 SLC6A14 1 +chrX 116442679 116442867 SLC6A14 1 +chrX 116443661 116443831 SLC6A14 1 +chrX 116444880 116445098 SLC6A14 1 +chrX 116446635 116446835 SLC6A14 1 +chrX 116451490 116451770 SLC6A14 1 +chrX 116452931 116453104 SLC6A14 1 +chrX 116454213 116454407 SLC6A14 1 +chrX 116454857 116455051 SLC6A14 1 +chrX 116455386 116455568 SLC6A14 1 +chrX 116457517 116457717 SLC6A14 1 +chrX 116458747 116459077 SLC6A14 1 +chrX 116461707 116462061 CT83 1 +chrX 116462811 116463014 CT83 1 +chrX 117898847 117899376 KLHL13 1 +chrX 117901804 117901977 KLHL13 1 +chrX 117909242 117910100 KLHL13 1 +chrX 117919476 117919673 KLHL13 1 +chrX 117920197 117920412 KLHL13 1 +chrX 117945351 117945723 KLHL13 1 +chrX 117972616 117972822 KLHL13 1 +chrX 117973246 117973437 KLHL13 1 +chrX 117983355 117983567 KLHL13 1 +chrX 117985204 117985374 KLHL13 1 +chrX 118028357 118028542 KLHL13 1 +chrX 118346343 118346620 WDR44 1 +chrX 118378278 118378463 WDR44 1 +chrX 118386272 118386472 WDR44 1 +chrX 118387261 118387452 WDR44 1 +chrX 118392617 118393291 WDR44 1 +chrX 118393938 118394224 WDR44 1 +chrX 118395202 118395396 WDR44 1 +chrX 118396976 118397152 WDR44 1 +chrX 118398334 118398513 WDR44 1 +chrX 118404290 118404478 WDR44 1 +chrX 118406853 118407035 WDR44 1 +chrX 118409403 118409606 WDR44 1 +chrX 118410802 118410999 WDR44 1 +chrX 118432719 118432907 WDR44 1 +chrX 118436606 118436877 WDR44 1 +chrX 118441333 118441530 WDR44 1 +chrX 118442185 118442388 WDR44 1 +chrX 118442582 118442767 WDR44 1 +chrX 118443556 118443738 WDR44 1 +chrX 118444335 118444511 WDR44 1 +chrX 118444875 118444995 WDR44 1 +chrX 118447061 118447261 WDR44 1 +chrX 118448831 118449102 WDR44 1 +chrX 118456779 118456899 Intergenic_2637 1 +chrX 118495928 118496101 DOCK11 1 +chrX 118542786 118543063 DOCK11 1 +chrX 118543463 118543651 DOCK11 1 +chrX 118545332 118545523 DOCK11 1 +chrX 118546043 118546213 DOCK11 1 +chrX 118561388 118561582 DOCK11 1 +chrX 118565999 118566187 DOCK11 1 +chrX 118566588 118566788 DOCK11 1 +chrX 118568095 118568271 DOCK11 1 +chrX 118572253 118572474 DOCK11 1 +chrX 118573886 118574074 DOCK11 1 +chrX 118578533 118578736 DOCK11 1 +chrX 118580112 118580297 DOCK11 1 +chrX 118584657 118585070 DOCK11 1 +chrX 118588282 118588544 DOCK11 1 +chrX 118590230 118590403 DOCK11 1 +chrX 118593250 118593426 DOCK11 1 +chrX 118597466 118597666 DOCK11 1 +chrX 118598047 118598229 DOCK11 1 +chrX 118599158 118599346 DOCK11 1 +chrX 118605265 118605453 DOCK11 1 +chrX 118608028 118608278 DOCK11 1 +chrX 118609288 118609473 DOCK11 1 +chrX 118610193 118610369 DOCK11 1 +chrX 118614708 118614878 DOCK11 1 +chrX 118615630 118615815 DOCK11 1 +chrX 118616156 118616335 DOCK11 1 +chrX 118618613 118618813 DOCK11 1 +chrX 118624565 118624744 DOCK11 1 +chrX 118627456 118627662 DOCK11 1 +chrX 118628192 118628383 DOCK11 1 +chrX 118630409 118630597 DOCK11 1 +chrX 118636350 118636550 DOCK11 1 +chrX 118638078 118638251 DOCK11 1 +chrX 118639357 118639530 DOCK11 1 +chrX 118641222 118641407 DOCK11 1 +chrX 118643500 118643682 DOCK11 1 +chrX 118649010 118649204 DOCK11 1 +chrX 118651974 118652180 DOCK11 1 +chrX 118654676 118655036 DOCK11 1 +chrX 118662713 118662883 DOCK11 1 +chrX 118671040 118671246 DOCK11 1 +chrX 118675952 118676164 DOCK11 1 +chrX 118676638 118676814 DOCK11 1 +chrX 118680561 118680734 DOCK11 1 +chrX 118681127 118681324 DOCK11 1 +chrX 118681712 118681912 DOCK11 1 +chrX 118683127 118683309 DOCK11 1 +chrX 118685601 118685952 DOCK11 1 +chrX 118727489 118727683 IL13RA1 1 +chrX 118740980 118741183 IL13RA1 1 +chrX 118746937 118747167 IL13RA1 1 +chrX 118749680 118749865 IL13RA1 1 +chrX 118757973 118758173 IL13RA1 1 +chrX 118761035 118761404 IL13RA1 1 +chrX 118766519 118766716 IL13RA1 1 +chrX 118766857 118767075 IL13RA1 1 +chrX 118770211 118770666 IL13RA1 1 +chrX 118773853 118774059 IL13RA1 1 +chrX 118776296 118776496 IL13RA1 1 +chrX 118791759 118791959 IL13RA1 1 +chrX 118804921 118805041 Intergenic_2638 1 +chrX 118825117 118826514 ZCCHC12 1 +chrX 118974683 118975683 LONRF3 1 +chrX 118978228 118978446 LONRF3 1 +chrX 118982727 118982915 LONRF3 1 +chrX 118986878 118987087 LONRF3 1 +chrX 118989474 118989742 LONRF3 1 +chrX 118990489 118990674 LONRF3 1 +chrX 119006086 119006262 LONRF3 1 +chrX 119009026 119009232 LONRF3 1 +chrX 119011721 119011918 LONRF3 1 +chrX 119012810 119013149 LONRF3 1 +chrX 119014181 119014381 LONRF3 1 +chrX 119017569 119017781 LONRF3 1 +chrX 119073168 119074014 Intergenic_2639 1 +chrX 119074852 119075043 Intergenic_2640 1 +chrX 119081275 119081466 KIAA1210 1 +chrX 119082936 119083139 KIAA1210 1 +chrX 119085381 119085581 KIAA1210 1 +chrX 119086564 119089798 KIAA1210 1 +chrX 119093617 119093814 KIAA1210 1 +chrX 119093878 119094066 KIAA1210 1 +chrX 119096431 119096619 KIAA1210 1 +chrX 119104923 119105126 KIAA1210 1 +chrX 119108378 119108554 KIAA1210 1 +chrX 119108963 119109163 KIAA1210 1 +chrX 119116548 119116745 KIAA1210 1 +chrX 119123492 119123671 KIAA1210 1 +chrX 119147507 119147698 KIAA1210 1 +chrX 119150237 119150511 KIAA1210 1 +chrX 119236324 119236746 PGRMC1 1 +chrX 119240361 119240555 PGRMC1 1 +chrX 119243102 119243400 PGRMC1 1 +chrX 119379612 119380052 Intergenic_2641 1 +chrX 119399334 119399685 SLC25A43 1 +chrX 119406365 119406654 SLC25A43 1 +chrX 119410124 119410300 SLC25A43 1 +chrX 119426150 119426362 SLC25A43 1 +chrX 119451945 119452148 SLC25A43 1 +chrX 119452859 119453142 SLC25A43 1 +chrX 119468384 119468504 SLC25A5 1 +chrX 119469848 119469968 SLC25A5 1 +chrX 119470118 119470238 SLC25A5 1 +chrX 119470417 119470605 SLC25A5 1 +chrX 119539584 119539864 CXorf56 1 +chrX 119541348 119541536 CXorf56 1 +chrX 119542524 119542724 CXorf56 1 +chrX 119544396 119544590 CXorf56 1 +chrX 119545398 119545592 CXorf56 1 +chrX 119560301 119560501 CXorf56 1 +chrX 119565276 119565476 CXorf56 1 +chrX 119574594 119575043 UBE2A 1 +chrX 119575299 119575475 UBE2A 1 +chrX 119581354 119581563 UBE2A 1 +chrX 119582540 119582719 UBE2A 1 +chrX 119583072 119583346 UBE2A 1 +chrX 119589275 119591368 NKRF 1 +chrX 119592325 119592611 NKRF 1 +chrX 119603387 119603587 NKRF 1 +chrX 119616568 119616836 SEPT6 1 +chrX 119618662 119618927 SEPT6 1 +chrX 119619844 119620062 SEPT6 1 +chrX 119623925 119624134 SEPT6 1 +chrX 119625284 119625478 SEPT6 1 +chrX 119629311 119629514 SEPT6 1 +chrX 119633322 119633531 SEPT6 1 +chrX 119635018 119635236 SEPT6 1 +chrX 119637016 119637284 SEPT6 1 +chrX 119640636 119640845 SEPT6 1 +chrX 119646632 119646829 SEPT6 1 +chrX 119649881 119650084 SEPT6 1 +chrX 119652915 119653121 SEPT6 1 +chrX 119663530 119663751 SEPT6 1 +chrX 119675453 119675635 SEPT6 1 +chrX 119686564 119686764 SEPT6 1 +chrX 119693084 119693284 SEPT6 1 +chrX 119695506 119695709 Intergenic_2642 1 +chrX 119758659 119759742 SOWAHD 1 +chrX 119786714 119786834 RPL39 1 +chrX 119787321 119787512 RPL39 1 +chrX 119790005 119790125 RPL39 1 +chrX 119791088 119791288 RPL39 1 +chrX 119791582 119791758 RPL39 1 +chrX 119834820 119835091 UPF3B 1 +chrX 119837745 119838007 UPF3B 1 +chrX 119838331 119838510 UPF3B 1 +chrX 119840492 119840704 UPF3B 1 +chrX 119841126 119841341 UPF3B 1 +chrX 119841731 119841922 UPF3B 1 +chrX 119843085 119843279 UPF3B 1 +chrX 119845203 119845400 UPF3B 1 +chrX 119851412 119851855 UPF3B 1 +chrX 119852813 119852995 UPF3B 1 +chrX 119870549 119871715 RNF113A 1 +chrX 119871770 119872029 NDUFA1 1 +chrX 119873275 119873493 NDUFA1 1 +chrX 119876471 119876641 NDUFA1 1 +chrX 119903152 119903598 AKAP14 1 +chrX 119914613 119914816 AKAP14 1 +chrX 119919265 119919453 AKAP14 1 +chrX 119919836 119920024 AKAP14 1 +chrX 119920495 119920683 AKAP14 1 +chrX 119925154 119925330 NKAP 1 +chrX 119930065 119930244 NKAP 1 +chrX 119931896 119932185 NKAP 1 +chrX 119934455 119934649 NKAP 1 +chrX 119936328 119936839 NKAP 1 +chrX 119938684 119938854 NKAP 1 +chrX 119943254 119943682 NKAP 1 +chrX 120109039 120109340 RHOXF1 1 +chrX 120112755 120112970 RHOXF1 1 +chrX 120115373 120115902 RHOXF1 1 +chrX 120253470 120255504 ZBTB33 1 +chrX 120260768 120261110 TMEM255A 1 +chrX 120268161 120268340 TMEM255A 1 +chrX 120276790 120276990 TMEM255A 1 +chrX 120285115 120285330 TMEM255A 1 +chrX 120285599 120285778 TMEM255A 1 +chrX 120285841 120286029 TMEM255A 1 +chrX 120287072 120287293 TMEM255A 1 +chrX 120291135 120291329 TMEM255A 1 +chrX 120293934 120294116 TMEM255A 1 +chrX 120304394 120304570 TMEM255A 1 +chrX 120311162 120311433 TMEM255A 1 +chrX 120362138 120362317 ATP1B4 1 +chrX 120366470 120366765 ATP1B4 1 +chrX 120370627 120370815 ATP1B4 1 +chrX 120371051 120371257 ATP1B4 1 +chrX 120375324 120375494 ATP1B4 1 +chrX 120376352 120376540 ATP1B4 1 +chrX 120378685 120378882 ATP1B4 1 +chrX 120379505 120379770 ATP1B4 1 +chrX 120428402 120428682 LAMP2 1 +chrX 120431239 120431415 LAMP2 1 +chrX 120439019 120439293 LAMP2 1 +chrX 120441732 120441935 LAMP2 1 +chrX 120442506 120442694 LAMP2 1 +chrX 120446280 120446507 LAMP2 1 +chrX 120447892 120448098 LAMP2 1 +chrX 120448912 120449103 LAMP2 1 +chrX 120455420 120455620 LAMP2 1 +chrX 120456663 120456866 LAMP2 1 +chrX 120469118 120469330 LAMP2 1 +chrX 120526635 120526912 CUL4B 1 +chrX 120530071 120530262 CUL4B 1 +chrX 120532467 120532667 CUL4B 1 +chrX 120534388 120534603 CUL4B 1 +chrX 120535801 120535980 CUL4B 1 +chrX 120536865 120537044 CUL4B 1 +chrX 120538004 120538210 CUL4B 1 +chrX 120538590 120538778 CUL4B 1 +chrX 120539291 120539464 CUL4B 1 +chrX 120540344 120540526 CUL4B 1 +chrX 120541530 120541724 CUL4B 1 +chrX 120542902 120543108 CUL4B 1 +chrX 120543697 120543912 CUL4B 1 +chrX 120544037 120544231 CUL4B 1 +chrX 120544398 120544601 CUL4B 1 +chrX 120545392 120545568 CUL4B 1 +chrX 120546538 120546756 CUL4B 1 +chrX 120547072 120547272 CUL4B 1 +chrX 120557917 120558096 CUL4B 1 +chrX 120559710 120559916 CUL4B 1 +chrX 120559944 120560645 CUL4B 1 +chrX 120561368 120561553 CUL4B 1 +chrX 120574504 120574728 CUL4B 1 +chrX 120604070 120604439 MCTS1 1 +chrX 120604725 120604928 MCTS1 1 +chrX 120605439 120605645 MCTS1 1 +chrX 120605964 120606167 MCTS1 1 +chrX 120608266 120608451 MCTS1 1 +chrX 120610977 120611174 MCTS1 1 +chrX 120612249 120612369 MCTS1 1 +chrX 120626131 120627199 C1GALT1C1 1 +chrX 120777870 120777990 Intergenic_2643 1 +chrX 120838035 120838205 Intergenic_2644 1 +chrX 120874807 120874995 CT47B1 1 +chrX 120875050 120875327 CT47B1 1 +chrX 121047608 121047858 GLUD2 1 +chrX 121047919 121048039 GLUD2 1 +chrX 121048301 121048498 GLUD2 1 +chrX 121048568 121048978 GLUD2 1 +chrX 121049048 121049304 GLUD2 1 +chrX 121370948 121371148 MIR3672 1 +chrX 122242253 122242426 Intergenic_2645 1 +chrX 123116866 123117875 Intergenic_2646 1 +chrX 123184377 123184643 GRIA3 1 +chrX 123184851 123185045 GRIA3 1 +chrX 123185885 123186055 GRIA3 1 +chrX 123202680 123202878 GRIA3 1 +chrX 123204359 123204639 GRIA3 1 +chrX 123253336 123253631 GRIA3 1 +chrX 123326085 123326276 GRIA3 1 +chrX 123354833 123355027 GRIA3 1 +chrX 123394894 123395073 GRIA3 1 +chrX 123398688 123398873 GRIA3 1 +chrX 123402897 123403100 GRIA3 1 +chrX 123403302 123403493 GRIA3 1 +chrX 123404683 123404880 GRIA3 1 +chrX 123417408 123417922 GRIA3 1 +chrX 123427978 123428175 GRIA3 1 +chrX 123464791 123465080 GRIA3 1 +chrX 123465785 123465905 GRIA3 1 +chrX 123480094 123480291 GRIA3 1 +chrX 123482838 123483109 GRIA3 1 +chrX 123562073 123562264 Intergenic_2647 1 +chrX 123610852 123611031 THOC2 1 +chrX 123611452 123611625 THOC2 1 +chrX 123613403 123613772 THOC2 1 +chrX 123614035 123614205 THOC2 1 +chrX 123619366 123619557 THOC2 1 +chrX 123620761 123620985 THOC2 1 +chrX 123621100 123621540 THOC2 1 +chrX 123622648 123622842 THOC2 1 +chrX 123623069 123623266 THOC2 1 +chrX 123623573 123624173 THOC2 1 +chrX 123624501 123624689 THOC2 1 +chrX 123625872 123626063 THOC2 1 +chrX 123626503 123626685 THOC2 1 +chrX 123627663 123627949 THOC2 1 +chrX 123631639 123631842 THOC2 1 +chrX 123632820 123633035 THOC2 1 +chrX 123633896 123634072 THOC2 1 +chrX 123636005 123636187 THOC2 1 +chrX 123637946 123638161 THOC2 1 +chrX 123638919 123639104 THOC2 1 +chrX 123640519 123640740 THOC2 1 +chrX 123644573 123644927 THOC2 1 +chrX 123645188 123645379 THOC2 1 +chrX 123665624 123665800 THOC2 1 +chrX 123667091 123667288 THOC2 1 +chrX 123668145 123668324 THOC2 1 +chrX 123671587 123671769 THOC2 1 +chrX 123686545 123686730 THOC2 1 +chrX 123695990 123696184 THOC2 1 +chrX 123696696 123696893 THOC2 1 +chrX 123697684 123697869 THOC2 1 +chrX 123703388 123703567 THOC2 1 +chrX 123706845 123707033 THOC2 1 +chrX 123712775 123712963 THOC2 1 +chrX 123732941 123733144 THOC2 1 +chrX 123885700 123886620 XIAP 1 +chrX 123888643 123888834 XIAP 1 +chrX 123891251 123891424 XIAP 1 +chrX 123892576 123892791 XIAP 1 +chrX 123900599 123900719 XIAP 1 +chrX 124022441 124022650 STAG2 1 +chrX 124025832 124026053 STAG2 1 +chrX 124026429 124026626 STAG2 1 +chrX 124030906 124031106 STAG2 1 +chrX 124037459 124037632 STAG2 1 +chrX 124042470 124042670 STAG2 1 +chrX 124045162 124045371 STAG2 1 +chrX 124047368 124047556 STAG2 1 +chrX 124048926 124049156 STAG2 1 +chrX 124050138 124050359 STAG2 1 +chrX 124051093 124051367 STAG2 1 +chrX 124056081 124056269 STAG2 1 +chrX 124057824 124058012 STAG2 1 +chrX 124061182 124061379 STAG2 1 +chrX 124061752 124061937 STAG2 1 +chrX 124062867 124063233 STAG2 1 +chrX 124063852 124064052 STAG2 1 +chrX 124065819 124065995 STAG2 1 +chrX 124066168 124066457 STAG2 1 +chrX 124068554 124068727 STAG2 1 +chrX 124071138 124071326 STAG2 1 +chrX 124076280 124076456 STAG2 1 +chrX 124077967 124078155 STAG2 1 +chrX 124081419 124081601 STAG2 1 +chrX 124083399 124083572 STAG2 1 +chrX 124086518 124086798 STAG2 1 +chrX 124090573 124091022 STAG2 1 +chrX 124093950 124094150 STAG2 1 +chrX 124095370 124095570 STAG2 1 +chrX 124097593 124097796 STAG2 1 +chrX 124100508 124100779 STAG2 1 +chrX 124346516 124346731 SH2D1A 1 +chrX 124353131 124353343 SH2D1A 1 +chrX 124364286 124364513 SH2D1A 1 +chrX 124365707 124365898 SH2D1A 1 +chrX 124370177 124370374 SH2D1A 1 +chrX 124371291 124371580 SH2D1A 1 +chrX 124380492 124381341 TENM1 1 +chrX 124382610 124382819 TENM1 1 +chrX 124383632 124384857 TENM1 1 +chrX 124385599 124386033 TENM1 1 +chrX 124392061 124392409 TENM1 1 +chrX 124404972 124405270 TENM1 1 +chrX 124406242 124406427 TENM1 1 +chrX 124420257 124420777 TENM1 1 +chrX 124422289 124422661 TENM1 1 +chrX 124453274 124453489 TENM1 1 +chrX 124481701 124481987 TENM1 1 +chrX 124487109 124487318 TENM1 1 +chrX 124496991 124497286 TENM1 1 +chrX 124503543 124503731 TENM1 1 +chrX 124520474 124520757 TENM1 1 +chrX 124523411 124523682 TENM1 1 +chrX 124529748 124529957 TENM1 1 +chrX 124546862 124547136 TENM1 1 +chrX 124561571 124561771 TENM1 1 +chrX 124563732 124563911 TENM1 1 +chrX 124565412 124565627 TENM1 1 +chrX 124641715 124641942 TENM1 1 +chrX 124645202 124645414 TENM1 1 +chrX 124646641 124646829 TENM1 1 +chrX 124651867 124652043 TENM1 1 +chrX 124653523 124653723 TENM1 1 +chrX 124671658 124671873 TENM1 1 +chrX 124704934 124705214 TENM1 1 +chrX 124736867 124737171 TENM1 1 +chrX 124894238 124894438 TENM1 1 +chrX 124895925 124896178 TENM1 1 +chrX 124963523 124963806 TENM1 1 +chrX 125320125 125321205 TEX13C 1 +chrX 125321245 125321365 TEX13C 1 +chrX 125321574 125321765 TEX13C 1 +chrX 125322525 125322645 TEX13C 1 +chrX 125322694 125323131 TEX13C 1 +chrX 126164575 126165385 DCAF12L2 1 +chrX 126165446 126166028 DCAF12L2 1 +chrX 126551247 126551989 DCAF12L1 1 +chrX 126552127 126552727 DCAF12L1 1 +chrX 126819776 126819973 PRR32 1 +chrX 126820585 126821650 PRR32 1 +chrX 128050975 128052310 ACTRT1 1 +chrX 129447100 129447291 SMARCA1 1 +chrX 129448288 129448464 SMARCA1 1 +chrX 129465508 129465963 SMARCA1 1 +chrX 129468723 129468908 SMARCA1 1 +chrX 129471179 129471352 SMARCA1 1 +chrX 129480693 129480878 SMARCA1 1 +chrX 129481023 129481244 SMARCA1 1 +chrX 129487016 129487207 SMARCA1 1 +chrX 129488919 129489095 SMARCA1 1 +chrX 129490067 129490252 SMARCA1 1 +chrX 129491907 129492116 SMARCA1 1 +chrX 129493029 129493217 SMARCA1 1 +chrX 129496713 129496913 SMARCA1 1 +chrX 129497829 129498088 SMARCA1 1 +chrX 129499641 129499832 SMARCA1 1 +chrX 129504634 129504837 SMARCA1 1 +chrX 129506054 129506245 SMARCA1 1 +chrX 129507930 129508103 SMARCA1 1 +chrX 129511784 129511993 SMARCA1 1 +chrX 129515687 129516050 SMARCA1 1 +chrX 129516328 129516501 SMARCA1 1 +chrX 129518324 129518530 SMARCA1 1 +chrX 129523191 129523477 SMARCA1 1 +chrX 129540253 129540447 OCRL 1 +chrX 129540722 129540916 OCRL 1 +chrX 129544825 129545040 OCRL 1 +chrX 129548445 129548636 OCRL 1 +chrX 129557273 129557491 OCRL 1 +chrX 129557769 129557963 OCRL 1 +chrX 129558561 129558921 OCRL 1 +chrX 129560515 129560715 OCRL 1 +chrX 129561135 129561350 OCRL 1 +chrX 129562289 129562744 OCRL 1 +chrX 129565703 129565885 OCRL 1 +chrX 129567244 129567429 OCRL 1 +chrX 129569228 129569428 OCRL 1 +chrX 129575049 129575225 OCRL 1 +chrX 129575822 129576004 OCRL 1 +chrX 129576255 129576550 OCRL 1 +chrX 129584285 129584479 OCRL 1 +chrX 129586742 129587105 OCRL 1 +chrX 129588156 129588350 OCRL 1 +chrX 129588876 129589082 OCRL 1 +chrX 129589824 129590030 OCRL 1 +chrX 129590183 129590377 OCRL 1 +chrX 129590921 129591278 OCRL 1 +chrX 129591860 129592220 OCRL 1 +chrX 129647627 129647883 APLN 1 +chrX 129648534 129648734 APLN 1 +chrX 129654511 129654684 APLN 1 +chrX 129739025 129739216 XPNPEP2 1 +chrX 129741975 129742175 XPNPEP2 1 +chrX 129743870 129744043 XPNPEP2 1 +chrX 129745110 129745307 XPNPEP2 1 +chrX 129746244 129746462 XPNPEP2 1 +chrX 129746650 129746856 XPNPEP2 1 +chrX 129747662 129747948 XPNPEP2 1 +chrX 129750346 129750549 XPNPEP2 1 +chrX 129751652 129751867 XPNPEP2 1 +chrX 129752147 129752344 XPNPEP2 1 +chrX 129753100 129753309 XPNPEP2 1 +chrX 129754501 129754689 XPNPEP2 1 +chrX 129755208 129755396 XPNPEP2 1 +chrX 129756479 129756676 XPNPEP2 1 +chrX 129759094 129759270 XPNPEP2 1 +chrX 129760506 129760706 XPNPEP2 1 +chrX 129761174 129761389 XPNPEP2 1 +chrX 129761875 129762069 XPNPEP2 1 +chrX 129762661 129762873 XPNPEP2 1 +chrX 129767562 129767738 XPNPEP2 1 +chrX 129768359 129768565 XPNPEP2 1 +chrX 129780032 129780235 SASH3 1 +chrX 129787937 129788107 SASH3 1 +chrX 129788412 129788594 SASH3 1 +chrX 129790836 129791054 SASH3 1 +chrX 129792388 129793225 SASH3 1 +chrX 129793685 129793888 SASH3 1 +chrX 129806262 129806432 ZDHHC9 1 +chrX 129810810 129811031 ZDHHC9 1 +chrX 129811342 129811551 ZDHHC9 1 +chrX 129812659 129812871 ZDHHC9 1 +chrX 129813645 129813818 ZDHHC9 1 +chrX 129814671 129814901 ZDHHC9 1 +chrX 129823585 129823791 ZDHHC9 1 +chrX 129828888 129829100 ZDHHC9 1 +chrX 129841808 129841996 ZDHHC9 1 +chrX 129906062 129906235 UTP14A 1 +chrX 129907373 129907561 UTP14A 1 +chrX 129908069 129908254 UTP14A 1 +chrX 129908676 129908855 UTP14A 1 +chrX 129911053 129911253 UTP14A 1 +chrX 129911677 129911871 UTP14A 1 +chrX 129913209 129913400 UTP14A 1 +chrX 129919217 129919574 UTP14A 1 +chrX 129920481 129920856 UTP14A 1 +chrX 129921231 129921689 UTP14A 1 +chrX 129924840 129925268 UTP14A 1 +chrX 129926063 129926423 UTP14A 1 +chrX 129929397 129929653 UTP14A 1 +chrX 130005078 130005278 BCORL1 1 +chrX 130012498 130012683 BCORL1 1 +chrX 130012963 130016268 BCORL1 1 +chrX 130020937 130021131 BCORL1 1 +chrX 130022770 130022961 BCORL1 1 +chrX 130024889 130025350 BCORL1 1 +chrX 130028544 130028824 BCORL1 1 +chrX 130034440 130034738 BCORL1 1 +chrX 130037292 130037486 BCORL1 1 +chrX 130039157 130039378 BCORL1 1 +chrX 130050697 130050888 BCORL1 1 +chrX 130051780 130051971 BCORL1 1 +chrX 130055824 130056202 BCORL1 1 +chrX 130066605 130067522 ELF4 1 +chrX 130069223 130069687 ELF4 1 +chrX 130071012 130071446 ELF4 1 +chrX 130072194 130072376 ELF4 1 +chrX 130073931 130074119 ELF4 1 +chrX 130074494 130074703 ELF4 1 +chrX 130081205 130081479 ELF4 1 +chrX 130129390 130129560 AIFM1 1 +chrX 130129901 130130095 AIFM1 1 +chrX 130131663 130131863 AIFM1 1 +chrX 130133355 130133537 AIFM1 1 +chrX 130136086 130136283 AIFM1 1 +chrX 130136514 130136738 AIFM1 1 +chrX 130136985 130137680 AIFM1 1 +chrX 130138540 130138755 AIFM1 1 +chrX 130139687 130139863 AIFM1 1 +chrX 130140474 130140665 AIFM1 1 +chrX 130145498 130145674 AIFM1 1 +chrX 130147533 130147964 AIFM1 1 +chrX 130149412 130149621 AIFM1 1 +chrX 130155069 130155248 AIFM1 1 +chrX 130156503 130156685 AIFM1 1 +chrX 130165600 130165788 AIFM1 1 +chrX 130171959 130172325 RAB33A 1 +chrX 130184309 130184826 RAB33A 1 +chrX 130204914 130205443 ZNF280C 1 +chrX 130209508 130209738 ZNF280C 1 +chrX 130215162 130215347 ZNF280C 1 +chrX 130215771 130216134 ZNF280C 1 +chrX 130220359 130220538 ZNF280C 1 +chrX 130226806 130226991 ZNF280C 1 +chrX 130227703 130227894 ZNF280C 1 +chrX 130228895 130229086 ZNF280C 1 +chrX 130230523 130230773 ZNF280C 1 +chrX 130236212 130236643 ZNF280C 1 +chrX 130239519 130239695 ZNF280C 1 +chrX 130243461 130243848 ZNF280C 1 +chrX 130246888 130247094 ZNF280C 1 +chrX 130260322 130260495 ZNF280C 1 +chrX 130340139 130340404 SLC25A14 1 +chrX 130345128 130345340 SLC25A14 1 +chrX 130346517 130346720 SLC25A14 1 +chrX 130349272 130349445 SLC25A14 1 +chrX 130350660 130350848 SLC25A14 1 +chrX 130358659 130358835 SLC25A14 1 +chrX 130358929 130359117 SLC25A14 1 +chrX 130364665 130364865 SLC25A14 1 +chrX 130365433 130365633 SLC25A14 1 +chrX 130371437 130371631 SLC25A14 1 +chrX 130372985 130373105 SLC25A14 1 +chrX 130384500 130385503 GPR119 1 +chrX 130401939 130402118 RBMX2 1 +chrX 130402367 130402487 RBMX2 1 +chrX 130403823 130404002 RBMX2 1 +chrX 130409352 130409472 RBMX2 1 +chrX 130411408 130411608 RBMX2 1 +chrX 130412335 130412455 RBMX2 1 +chrX 130412655 130412855 RBMX2 1 +chrX 130495080 130495327 FAM45BP 1 +chrX 130495350 130495520 FAM45BP 1 +chrX 130495587 130496160 FAM45BP 1 +chrX 130625186 130625531 ENOX2 1 +chrX 130627951 130628163 ENOX2 1 +chrX 130631496 130631675 ENOX2 1 +chrX 130634901 130635092 ENOX2 1 +chrX 130637261 130637461 ENOX2 1 +chrX 130656576 130656767 ENOX2 1 +chrX 130665526 130665741 ENOX2 1 +chrX 130667475 130667675 ENOX2 1 +chrX 130669893 130670158 ENOX2 1 +chrX 130679595 130679816 ENOX2 1 +chrX 130688837 130689049 ENOX2 1 +chrX 130703077 130703286 ENOX2 1 +chrX 130709122 130709307 ENOX2 1 +chrX 131058237 131058425 ARHGAP36 1 +chrX 131078695 131078889 ARHGAP36 1 +chrX 131081566 131081923 ARHGAP36 1 +chrX 131083079 131083267 ARHGAP36 1 +chrX 131083640 131083917 ARHGAP36 1 +chrX 131084282 131084473 ARHGAP36 1 +chrX 131084568 131084762 ARHGAP36 1 +chrX 131084918 131085109 ARHGAP36 1 +chrX 131085650 131086143 ARHGAP36 1 +chrX 131086241 131086619 ARHGAP36 1 +chrX 131088694 131088894 ARHGAP36 1 +chrX 131273665 131274182 IGSF1 1 +chrX 131274635 131275300 IGSF1 1 +chrX 131275550 131275833 IGSF1 1 +chrX 131275919 131276172 IGSF1 1 +chrX 131276939 131277216 IGSF1 1 +chrX 131277896 131278179 IGSF1 1 +chrX 131278537 131278796 IGSF1 1 +chrX 131279069 131279269 IGSF1 1 +chrX 131281204 131281404 IGSF1 1 +chrX 131281706 131281959 IGSF1 1 +chrX 131282387 131282658 IGSF1 1 +chrX 131282924 131283189 IGSF1 1 +chrX 131285016 131285551 IGSF1 1 +chrX 131285707 131285987 IGSF1 1 +chrX 131286431 131286812 IGSF1 1 +chrX 131289109 131289389 IGSF1 1 +chrX 131290294 131290414 Intergenic_2648 1 +chrX 131299772 131299892 Intergenic_2649 1 +chrX 131304012 131304191 Intergenic_2650 1 +chrX 131544019 131545022 OR13H1 1 +chrX 132023263 132023673 STK26 1 +chrX 132054578 132054840 STK26 1 +chrX 132055379 132055597 STK26 1 +chrX 132063372 132063548 STK26 1 +chrX 132068205 132068571 STK26 1 +chrX 132069449 132069637 STK26 1 +chrX 132071066 132071257 STK26 1 +chrX 132072202 132072417 STK26 1 +chrX 132072854 132073110 STK26 1 +chrX 132074200 132074320 STK26 1 +chrX 132077812 132078963 FRMD7 1 +chrX 132080043 132080338 FRMD7 1 +chrX 132082269 132082469 FRMD7 1 +chrX 132084497 132084694 FRMD7 1 +chrX 132085590 132085784 FRMD7 1 +chrX 132085951 132086121 FRMD7 1 +chrX 132094023 132094285 FRMD7 1 +chrX 132097150 132097347 FRMD7 1 +chrX 132099394 132099576 FRMD7 1 +chrX 132100602 132100787 FRMD7 1 +chrX 132127747 132128012 FRMD7 1 +chrX 132214089 132214440 RAP2C 1 +chrX 132216922 132217362 RAP2C 1 +chrX 132379479 132379762 MBNL3 1 +chrX 132381356 132381556 MBNL3 1 +chrX 132382112 132382339 MBNL3 1 +chrX 132384592 132384771 MBNL3 1 +chrX 132386680 132386895 MBNL3 1 +chrX 132390899 132391176 MBNL3 1 +chrX 132392096 132392323 MBNL3 1 +chrX 132406224 132406439 MBNL3 1 +chrX 132413359 132413562 MBNL3 1 +chrX 132439385 132439668 MBNL3 1 +chrX 132628141 132629052 HS6ST2 1 +chrX 132669025 132669237 HS6ST2 1 +chrX 132708423 132708623 HS6ST2 1 +chrX 132956877 132957382 HS6ST2 1 +chrX 132958228 132958686 HS6ST2 1 +chrX 133025391 133028317 USP26 1 +chrX 133216923 133217253 TFDP3 1 +chrX 133217320 133218308 TFDP3 1 +chrX 133302784 133303357 GPC4 1 +chrX 133304680 133304898 GPC4 1 +chrX 133305760 133306224 GPC4 1 +chrX 133311177 133311368 GPC4 1 +chrX 133324078 133324518 GPC4 1 +chrX 133339113 133339292 GPC4 1 +chrX 133414761 133415023 GPC4 1 +chrX 133536024 133536322 GPC3 1 +chrX 133596351 133596575 GPC3 1 +chrX 133661713 133661913 GPC3 1 +chrX 133692315 133692536 GPC3 1 +chrX 133699816 133700013 GPC3 1 +chrX 133704165 133704371 GPC3 1 +chrX 133753518 133754195 GPC3 1 +chrX 133953042 133953236 GPC3 1 +chrX 133985303 133985506 GPC3 1 +chrX 134169382 134170314 MIR363 1 +chrX 134244766 134245816 CCDC160 1 +chrX 134377543 134377734 PHF6 1 +chrX 134377997 134378170 PHF6 1 +chrX 134393449 134393637 PHF6 1 +chrX 134393833 134394027 PHF6 1 +chrX 134413529 134414049 PHF6 1 +chrX 134414952 134415226 PHF6 1 +chrX 134417173 134417447 PHF6 1 +chrX 134425113 134425470 PHF6 1 +chrX 134460152 134460346 HPRT1 1 +chrX 134473347 134473535 HPRT1 1 +chrX 134475229 134475441 HPRT1 1 +chrX 134486479 134486688 HPRT1 1 +chrX 134490165 134490359 HPRT1 1 +chrX 134492349 134492549 HPRT1 1 +chrX 134493463 134493651 HPRT1 1 +chrX 134498324 134498631 HPRT1 1 +chrX 134500046 134500240 HPRT1 1 +chrX 134540187 134540612 MIR450B 1 +chrX 134541216 134541416 MIR542 1 +chrX 134546187 134546393 MIR503 1 +chrX 134546604 134546777 MIR424 1 +chrX 134565932 134566784 PLAC1 1 +chrX 134771178 134771529 FAM122B 1 +chrX 134772058 134772341 FAM122B 1 +chrX 134781795 134781992 FAM122B 1 +chrX 134785817 134786011 FAM122B 1 +chrX 134787372 134787575 FAM122B 1 +chrX 134788686 134788865 FAM122B 1 +chrX 134789133 134789333 FAM122B 1 +chrX 134789576 134789779 FAM122B 1 +chrX 134791566 134791751 FAM122B 1 +chrX 134793708 134793890 FAM122B 1 +chrX 134796010 134796373 FAM122B 1 +chrX 134804133 134804306 FAM122C 1 +chrX 134807470 134807729 FAM122C 1 +chrX 134814766 134814963 FAM122C 1 +chrX 134821263 134821519 FAM122C 1 +chrX 134829156 134829347 FAM122C 1 +chrX 134845274 134845465 FAM122C 1 +chrX 134847280 134847483 FAM122C 1 +chrX 134847808 134847984 FAM122C 1 +chrX 134849034 134849252 FAM122C 1 +chrX 134852762 134852956 FAM122C 1 +chrX 134854025 134854364 FAM122C 1 +chrX 134889048 134889168 MOSPD1 1 +chrX 134891402 134891584 MOSPD1 1 +chrX 134896845 134897110 MOSPD1 1 +chrX 134899060 134899497 MOSPD1 1 +chrX 134989160 134989351 Intergenic_2651 1 +chrX 134990947 134991369 SMIM10 1 +chrX 135022375 135022495 RTL8B 1 +chrX 135032387 135032507 RTL8C 1 +chrX 135051215 135051557 RTL8A 1 +chrX 135051668 135051788 RTL8A 1 +chrX 135052018 135052194 RTL8A 1 +chrX 135158097 135158285 CT55 1 +chrX 135160322 135160507 CT55 1 +chrX 135169740 135169860 CT55 1 +chrX 135171071 135171301 CT55 1 +chrX 135287002 135287282 ZNF75D 1 +chrX 135287325 135287445 ZNF75D 1 +chrX 135287482 135287931 ZNF75D 1 +chrX 135291037 135291234 ZNF75D 1 +chrX 135291486 135291677 ZNF75D 1 +chrX 135292324 135292551 ZNF75D 1 +chrX 135293657 135294204 ZNF75D 1 +chrX 135347084 135347681 ZNF449 1 +chrX 135348622 135348970 ZNF449 1 +chrX 135349013 135349379 ZNF449 1 +chrX 135359785 135359976 ZNF449 1 +chrX 135360141 135361206 ZNF449 1 +chrX 135520874 135521293 INTS6L 1 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SAGE1 1 +chrX 135909575 135909769 SAGE1 1 +chrX 135909939 135910124 SAGE1 1 +chrX 135910339 135910509 SAGE1 1 +chrX 135911110 135911286 SAGE1 1 +chrX 135911574 135911907 SAGE1 1 +chrX 135912857 135913063 SAGE1 1 +chrX 135964885 135965183 MMGT1 1 +chrX 135967353 135967529 MMGT1 1 +chrX 135971010 135971198 MMGT1 1 +chrX 135973493 135974013 MMGT1 1 +chrX 135974688 135974808 Intergenic_2652 1 +chrX 135985498 135985870 SLC9A6 1 +chrX 135994728 135994925 SLC9A6 1 +chrX 135998115 135998303 SLC9A6 1 +chrX 135998404 135998595 SLC9A6 1 +chrX 135998826 135999011 SLC9A6 1 +chrX 136002090 136002278 SLC9A6 1 +chrX 136010382 136010597 SLC9A6 1 +chrX 136012844 136013026 SLC9A6 1 +chrX 136013268 136013468 SLC9A6 1 +chrX 136016610 136016786 SLC9A6 1 +chrX 136022604 136022804 SLC9A6 1 +chrX 136024342 136024524 SLC9A6 1 +chrX 136030091 136030321 SLC9A6 1 +chrX 136033362 136033538 SLC9A6 1 +chrX 136040103 136040273 SLC9A6 1 +chrX 136044466 136044826 SLC9A6 1 +chrX 136196776 136197139 FHL1 1 +chrX 136206446 136206655 FHL1 1 +chrX 136207047 136207217 FHL1 1 +chrX 136207412 136207597 FHL1 1 +chrX 136207704 136207901 FHL1 1 +chrX 136208378 136208572 FHL1 1 +chrX 136209310 136209516 FHL1 1 +chrX 136209918 136210106 FHL1 1 +chrX 136219393 136219756 MAP7D3 1 +chrX 136220805 136220978 MAP7D3 1 +chrX 136222348 136222539 MAP7D3 1 +chrX 136224705 136224884 MAP7D3 1 +chrX 136225788 136226003 MAP7D3 1 +chrX 136227227 136227442 MAP7D3 1 +chrX 136228560 136228772 MAP7D3 1 +chrX 136230379 136230591 MAP7D3 1 +chrX 136230757 136230978 MAP7D3 1 +chrX 136231496 136232206 MAP7D3 1 +chrX 136236230 136236409 MAP7D3 1 +chrX 136240345 136240518 MAP7D3 1 +chrX 136241127 136241303 MAP7D3 1 +chrX 136244559 136244747 MAP7D3 1 +chrX 136246128 136246402 MAP7D3 1 +chrX 136251307 136251513 MAP7D3 1 +chrX 136256151 136256336 MAP7D3 1 +chrX 136308633 136308848 ADGRG4 1 +chrX 136322823 136323414 ADGRG4 1 +chrX 136344407 136350426 ADGRG4 1 +chrX 136351375 136351569 ADGRG4 1 +chrX 136353343 136353528 ADGRG4 1 +chrX 136356033 136356242 ADGRG4 1 +chrX 136357695 136357886 ADGRG4 1 +chrX 136359213 136359407 ADGRG4 1 +chrX 136361417 136361635 ADGRG4 1 +chrX 136363411 136363602 ADGRG4 1 +chrX 136371241 136371530 ADGRG4 1 +chrX 136372825 136373016 ADGRG4 1 +chrX 136387679 136387876 ADGRG4 1 +chrX 136392198 136392392 ADGRG4 1 +chrX 136393532 136393732 ADGRG4 1 +chrX 136395350 136395535 ADGRG4 1 +chrX 136397799 136398014 ADGRG4 1 +chrX 136399844 136400118 ADGRG4 1 +chrX 136403113 136403328 ADGRG4 1 +chrX 136405736 136406040 ADGRG4 1 +chrX 136412206 136412430 ADGRG4 1 +chrX 136414131 136414358 ADGRG4 1 +chrX 136416440 136416560 ADGRG4 1 +chrX 136488009 136488615 BRS3 1 +chrX 136490176 136490554 BRS3 1 +chrX 136491920 136492464 BRS3 1 +chrX 136497586 136497943 HTATSF1 1 +chrX 136499602 136499820 HTATSF1 1 +chrX 136500006 136500206 HTATSF1 1 +chrX 136500706 136500909 HTATSF1 1 +chrX 136502774 136502947 HTATSF1 1 +chrX 136504271 136504492 HTATSF1 1 +chrX 136509032 136509232 HTATSF1 1 +chrX 136510035 136510253 HTATSF1 1 +chrX 136510750 136512085 HTATSF1 1 +chrX 136535918 136536180 VGLL1 1 +chrX 136548536 136548988 VGLL1 1 +chrX 136550732 136550929 VGLL1 1 +chrX 136556510 136556701 VGLL1 1 +chrX 136648259 136648465 CD40LG 1 +chrX 136650297 136650479 CD40LG 1 +chrX 136654241 136654441 CD40LG 1 +chrX 136656265 136656441 CD40LG 1 +chrX 136659019 136659548 CD40LG 1 +chrX 136667883 136668228 ARHGEF6 1 +chrX 136669420 136669599 ARHGEF6 1 +chrX 136672008 136672211 ARHGEF6 1 +chrX 136674912 136675133 ARHGEF6 1 +chrX 136676585 136676761 ARHGEF6 1 +chrX 136677818 136678006 ARHGEF6 1 +chrX 136679452 136679628 ARHGEF6 1 +chrX 136680688 136680912 ARHGEF6 1 +chrX 136681849 136682058 ARHGEF6 1 +chrX 136682691 136682888 ARHGEF6 1 +chrX 136685676 136685876 ARHGEF6 1 +chrX 136687927 136688127 ARHGEF6 1 +chrX 136690581 136690763 ARHGEF6 1 +chrX 136706871 136707056 ARHGEF6 1 +chrX 136708616 136708807 ARHGEF6 1 +chrX 136713237 136713407 ARHGEF6 1 +chrX 136732051 136732239 ARHGEF6 1 +chrX 136737448 136737568 ARHGEF6 1 +chrX 136743657 136743842 ARHGEF6 1 +chrX 136745178 136745399 ARHGEF6 1 +chrX 136747431 136747613 ARHGEF6 1 +chrX 136779343 136779564 ARHGEF6 1 +chrX 136780764 136780949 ARHGEF6 1 +chrX 136872281 136872457 RBMX 1 +chrX 136874412 136874532 RBMX 1 +chrX 136875135 136875308 RBMX 1 +chrX 136875348 136875468 RBMX 1 +chrX 136875538 136875658 RBMX 1 +chrX 136876612 136876732 RBMX 1 +chrX 136878052 136878172 RBMX 1 +chrX 136879088 136879338 RBMX 1 +chrX 136879405 136879525 RBMX 1 +chrX 137030067 137031639 GPR101 1 +chrX 137566618 137567707 ZIC3 1 +chrX 137568868 137569083 ZIC3 1 +chrX 137569819 137570173 ZIC3 1 +chrX 137577043 137577403 ZIC3 1 +chrX 138632708 138632908 FGF13 1 +chrX 138635416 138635637 FGF13 1 +chrX 138667723 138667911 FGF13 1 +chrX 138702926 138703135 FGF13 1 +chrX 138708757 138708987 FGF13 1 +chrX 138710780 138711078 FGF13 1 +chrX 138739214 138739429 FGF13 1 +chrX 138857528 138857716 FGF13 1 +chrX 138985010 138985207 FGF13 1 +chrX 139204013 139204189 FGF13 1 +chrX 139362003 139362440 Intergenic_2653 1 +chrX 139530675 139530878 F9 1 +chrX 139537027 139537212 F9 1 +chrX 139537330 139537548 F9 1 +chrX 139541017 139541196 F9 1 +chrX 139548359 139548544 F9 1 +chrX 139551062 139551259 F9 1 +chrX 139560736 139560918 F9 1 +chrX 139561446 139562209 F9 1 +chrX 139582312 139582571 MCF2 1 +chrX 139585054 139585254 MCF2 1 +chrX 139586299 139586514 MCF2 1 +chrX 139587660 139587848 MCF2 1 +chrX 139588268 139588477 MCF2 1 +chrX 139589720 139589914 MCF2 1 +chrX 139596489 139596781 MCF2 1 +chrX 139597371 139597571 MCF2 1 +chrX 139598276 139598503 MCF2 1 +chrX 139602399 139602614 MCF2 1 +chrX 139604700 139605066 MCF2 1 +chrX 139605597 139605782 MCF2 1 +chrX 139607619 139607819 MCF2 1 +chrX 139610144 139610356 MCF2 1 +chrX 139613184 139613414 MCF2 1 +chrX 139614863 139615072 MCF2 1 +chrX 139616277 139616474 MCF2 1 +chrX 139617508 139617714 MCF2 1 +chrX 139619558 139619752 MCF2 1 +chrX 139626098 139626304 MCF2 1 +chrX 139626589 139626786 MCF2 1 +chrX 139629669 139629875 MCF2 1 +chrX 139631319 139631531 MCF2 1 +chrX 139632324 139632524 MCF2 1 +chrX 139642519 139642639 MCF2 1 +chrX 139645545 139645727 MCF2 1 +chrX 139646787 139646975 MCF2 1 +chrX 139651713 139651922 MCF2 1 +chrX 139691856 139692059 MCF2 1 +chrX 139728731 139728999 ATP11C 1 +chrX 139731600 139731803 ATP11C 1 +chrX 139732385 139732588 ATP11C 1 +chrX 139737771 139738128 ATP11C 1 +chrX 139740999 139741196 ATP11C 1 +chrX 139743536 139743727 ATP11C 1 +chrX 139745704 139745913 ATP11C 1 +chrX 139749976 139750188 ATP11C 1 +chrX 139757746 139757925 ATP11C 1 +chrX 139761978 139762184 ATP11C 1 +chrX 139763248 139763421 ATP11C 1 +chrX 139768195 139768395 ATP11C 1 +chrX 139774747 139775030 ATP11C 1 +chrX 139782543 139782734 ATP11C 1 +chrX 139783088 139783270 ATP11C 1 +chrX 139785147 139785332 ATP11C 1 +chrX 139787036 139787245 ATP11C 1 +chrX 139788164 139788361 ATP11C 1 +chrX 139789352 139789528 ATP11C 1 +chrX 139796265 139796459 ATP11C 1 +chrX 139797087 139797284 ATP11C 1 +chrX 139798258 139798473 ATP11C 1 +chrX 139798685 139798870 ATP11C 1 +chrX 139799933 139800124 ATP11C 1 +chrX 139802175 139802378 ATP11C 1 +chrX 139804437 139804619 ATP11C 1 +chrX 139814873 139815073 ATP11C 1 +chrX 139816802 139817017 ATP11C 1 +chrX 139819315 139819509 ATP11C 1 +chrX 139826699 139826899 ATP11C 1 +chrX 139832053 139832253 ATP11C 1 +chrX 139924038 139924214 ATP11C 1 +chrX 139931999 139932196 ATP11C 1 +chrX 139955833 139956768 CXorf66 1 +chrX 139957980 139958180 CXorf66 1 +chrX 139965393 139965605 CXorf66 1 +chrX 140017240 140017410 LOC728660 1 +chrX 140503639 140504562 SOX3 1 +chrX 140504620 140505069 SOX3 1 +chrX 140709640 140709870 LINC00632 1 +chrX 140711574 140711753 LINC00632 1 +chrX 140713458 140713889 LINC00632 1 +chrX 140783453 140784459 CDR1 1 +chrX 140926167 140926355 MIR320D2 1 +chrX 141176492 141177071 LDOC1 1 +chrX 141625941 141626307 LOC645188 1 +chrX 141626396 141626602 LOC645188 1 +chrX 141697602 141697722 SPANXD 1 +chrX 141838201 141838401 MAGEC3 1 +chrX 141865380 141865571 MAGEC3 1 +chrX 141879237 141879496 MAGEC3 1 +chrX 141880837 141881034 MAGEC3 1 +chrX 141881424 141881888 MAGEC3 1 +chrX 141894622 141894807 MAGEC3 1 +chrX 141895255 141895526 MAGEC3 1 +chrX 141896526 141897754 MAGEC3 1 +chrX 141905078 141905198 MAGEC1 1 +chrX 141905335 141905858 MAGEC1 1 +chrX 141906882 141907052 MAGEC1 1 +chrX 141907202 141908892 MAGEC1 1 +chrX 142202758 142203183 MAGEC2 1 +chrX 142203253 142203983 MAGEC2 1 +chrX 143025871 143026083 SPANXN4 1 +chrX 143033964 143034223 SPANXN4 1 +chrX 143034580 143034765 Intergenic_2654 1 +chrX 143508699 143509154 SPANXN3 1 +chrX 143628517 143631167 SLITRK4 1 +chrX 143711932 143712052 SPANXN2 1 +chrX 143712353 143712473 SPANXN2 1 +chrX 143720700 143720820 Intergenic_2655 1 +chrX 143884026 143884146 UBE2NL 1 +chrX 143884186 143884306 UBE2NL 1 +chrX 145255715 145255918 SPANXN1 1 +chrX 145822306 145825054 SLITRK2 1 +chrX 145827610 145828074 Intergenic_2656 1 +chrX 145994197 145994373 MIR890 1 +chrX 145994652 145994846 MIR888 1 +chrX 145996650 145996871 MIR892A 1 +chrX 145997117 145997290 MIR892B 1 +chrX 146001006 146001179 MIR891B 1 +chrX 146027747 146027923 MIR891A 1 +chrX 147199140 147199260 Intergenic_2657 1 +chrX 147230679 147231048 MIR506 1 +chrX 147236938 147237135 MIR508 1 +chrX 147250066 147250260 MIR514B 1 +chrX 147272298 147272489 MIR510 1 +chrX 147912105 147912290 FMR1 1 +chrX 147921903 147922130 FMR1 1 +chrX 147925444 147925653 FMR1 1 +chrX 147928287 147928472 FMR1 1 +chrX 147928674 147928856 FMR1 1 +chrX 147929942 147930317 FMR1 1 +chrX 147932377 147932743 FMR1 1 +chrX 147933373 147933582 FMR1 1 +chrX 147936464 147936655 FMR1 1 +chrX 147937411 147937602 FMR1 1 +chrX 147937993 147938205 FMR1 1 +chrX 147940467 147940667 FMR1 1 +chrX 147943107 147943292 FMR1 1 +chrX 147944811 147944984 FMR1 1 +chrX 147945474 147945671 FMR1 1 +chrX 147948646 147948920 FMR1 1 +chrX 147981369 147981699 FMR1NB 1 +chrX 148003169 148003354 FMR1NB 1 +chrX 148006686 148006862 FMR1NB 1 +chrX 148008564 148008770 FMR1NB 1 +chrX 148024825 148025037 FMR1NB 1 +chrX 148500919 148501217 AFF2 1 +chrX 148638067 148638187 AFF2 1 +chrX 148651784 148652156 AFF2 1 +chrX 148661832 148662782 AFF2 1 +chrX 148719147 148719335 AFF2 1 +chrX 148809803 148809988 AFF2 1 +chrX 148837586 148837789 AFF2 1 +chrX 148842883 148843083 AFF2 1 +chrX 148843361 148843567 AFF2 1 +chrX 148885779 148885961 AFF2 1 +chrX 148904143 148904337 AFF2 1 +chrX 148953484 148953714 AFF2 1 +chrX 148955562 148956547 AFF2 1 +chrX 148958252 148958422 AFF2 1 +chrX 148962670 148962938 AFF2 1 +chrX 148966728 148967008 AFF2 1 +chrX 148967626 148967832 AFF2 1 +chrX 148973465 148973683 AFF2 1 +chrX 148977808 148977993 AFF2 1 +chrX 148978263 148978457 AFF2 1 +chrX 148980711 148980938 AFF2 1 +chrX 148987436 148987630 AFF2 1 +chrX 148991120 148991415 AFF2 1 +chrX 149482650 149483259 IDS 1 +chrX 149486862 149487311 IDS 1 +chrX 149490351 149490536 IDS 1 +chrX 149491539 149491730 IDS 1 +chrX 149496270 149496458 IDS 1 +chrX 149498154 149498381 IDS 1 +chrX 149500886 149501092 IDS 1 +chrX 149502053 149502235 IDS 1 +chrX 149503075 149503260 IDS 1 +chrX 149504184 149504375 IDS 1 +chrX 149504970 149505256 IDS 1 +chrX 149525972 149526159 Intergenic_2658 1 +chrX 149538196 149538315 LINC00893 1 +chrX 149541200 149541390 CXorf40A 1 +chrX 149541876 149541996 CXorf40A 1 +chrX 149546951 149547071 CXorf40A 1 +chrX 149599460 149599581 TMEM185A 1 +chrX 149603820 149604100 TMEM185A 1 +chrX 149608699 149608878 TMEM185A 1 +chrX 149611199 149611399 TMEM185A 1 +chrX 149631517 149631794 TMEM185A 1 +chrX 149688868 149689083 MAGEA11 1 +chrX 149713024 149713236 MAGEA11 1 +chrX 149715589 149716559 MAGEA11 1 +chrX 149716626 149716820 MAGEA11 1 +chrX 149769794 149769916 Intergenic_2659 1 +chrX 149884218 149885138 MAGEA8 1 +chrX 149885190 149885310 MAGEA8 1 +chrX 149932407 149932527 CXorf40A 1 +chrX 150228015 150228203 MIR2114 1 +chrX 150445412 150445588 MAMLD1 1 +chrX 150462633 150462839 MAMLD1 1 +chrX 150469732 150471562 MAMLD1 1 +chrX 150473715 150473909 MAMLD1 1 +chrX 150503180 150503475 MAMLD1 1 +chrX 150509845 150510042 MAMLD1 1 +chrX 150511986 150513075 MAMLD1 1 +chrX 150592505 150592717 MTM1 1 +chrX 150596414 150596605 MTM1 1 +chrX 150598604 150598792 MTM1 1 +chrX 150614546 150614737 MTM1 1 +chrX 150618940 150619113 MTM1 1 +chrX 150638956 150639138 MTM1 1 +chrX 150641210 150641398 MTM1 1 +chrX 150645709 150645912 MTM1 1 +chrX 150649708 150649908 MTM1 1 +chrX 150657778 150658008 MTM1 1 +chrX 150659591 150659779 MTM1 1 +chrX 150660369 150660551 MTM1 1 +chrX 150663495 150663665 MTM1 1 +chrX 150671451 150671728 MTM1 1 +chrX 150693419 150693720 MTMR1 1 +chrX 150699195 150699404 MTMR1 1 +chrX 150712274 150712486 MTMR1 1 +chrX 150712787 150712999 MTMR1 1 +chrX 150714478 150714663 MTMR1 1 +chrX 150718634 150718834 MTMR1 1 +chrX 150727143 150727334 MTMR1 1 +chrX 150727625 150727849 MTMR1 1 +chrX 150730044 150730259 MTMR1 1 +chrX 150730514 150730723 MTMR1 1 +chrX 150731444 150731650 MTMR1 1 +chrX 150732610 150732786 MTMR1 1 +chrX 150735441 150735656 MTMR1 1 +chrX 150736608 150736817 MTMR1 1 +chrX 150737193 150737378 MTMR1 1 +chrX 150744267 150744488 MTMR1 1 +chrX 150750689 150750874 MTMR1 1 +chrX 150751002 150751229 MTMR1 1 +chrX 150755685 150755873 MTMR1 1 +chrX 150762559 150762857 MTMR1 1 +chrX 150768827 150769027 CD99L2 1 +chrX 150770191 150770400 CD99L2 1 +chrX 150771725 150771898 CD99L2 1 +chrX 150776100 150776291 CD99L2 1 +chrX 150777367 150777540 CD99L2 1 +chrX 150793593 150793784 CD99L2 1 +chrX 150795217 150795491 CD99L2 1 +chrX 150814798 150815013 CD99L2 1 +chrX 150815112 150815297 CD99L2 1 +chrX 150816006 150816191 CD99L2 1 +chrX 150829322 150829676 CD99L2 1 +chrX 150831086 150831298 CD99L2 1 +chrX 150898446 150898637 CD99L2 1 +chrX 150985467 150985587 HMGB3 1 +chrX 150986158 150986278 HMGB3 1 +chrX 150987266 150987386 HMGB3 1 +chrX 151168107 151168298 MIR4330 1 +chrX 151176698 151176975 GPR50 1 +chrX 151179690 151181431 GPR50 1 +chrX 151396794 151397068 Intergenic_2660 1 +chrX 151397132 151397317 VMA21 1 +chrX 151403660 151403833 VMA21 1 +chrX 151404933 151405133 VMA21 1 +chrX 151601463 151601660 PASD1 1 +chrX 151604625 151604816 PASD1 1 +chrX 151611623 151611805 PASD1 1 +chrX 151620837 151621034 PASD1 1 +chrX 151621496 151621711 PASD1 1 +chrX 151622834 151623043 PASD1 1 +chrX 151625418 151625618 PASD1 1 +chrX 151648555 151648773 PASD1 1 +chrX 151659707 151659892 PASD1 1 +chrX 151664024 151664313 PASD1 1 +chrX 151670956 151671159 PASD1 1 +chrX 151671635 151671832 PASD1 1 +chrX 151672227 151672738 PASD1 1 +chrX 151673868 151674136 PASD1 1 +chrX 151676055 151676237 PASD1 1 +chrX 151698658 151698834 PRRG3 1 +chrX 151700028 151700379 PRRG3 1 +chrX 151700491 151701106 PRRG3 1 +chrX 151705131 151705488 Intergenic_2661 1 +chrX 151716000 151716206 FATE1 1 +chrX 151717169 151717378 FATE1 1 +chrX 151721272 151721499 FATE1 1 +chrX 151721781 151721981 FATE1 1 +chrX 151722639 151722842 FATE1 1 +chrX 151738455 151738643 CNGA2 1 +chrX 151738666 151738869 CNGA2 1 +chrX 151739489 151739677 CNGA2 1 +chrX 151740693 151740887 CNGA2 1 +chrX 151742551 151742757 CNGA2 1 +chrX 151743118 151744610 CNGA2 1 +chrX 151912507 151912683 Intergenic_2662 1 +chrX 151923495 151923665 MAGEA4 1 +chrX 151923735 151924065 MAGEA4 1 +chrX 151924135 151924385 MAGEA4 1 +chrX 151924449 151924569 MAGEA4 1 +chrX 151954661 151955806 GABRE 1 +chrX 151957430 151957636 GABRE 1 +chrX 151958532 151958705 GABRE 1 +chrX 151958881 151959093 GABRE 1 +chrX 151959589 151959949 GABRE 1 +chrX 151961178 151961381 GABRE 1 +chrX 151962323 151962600 GABRE 1 +chrX 151969551 151969754 GABRE 1 +chrX 151970201 151970496 GABRE 1 +chrX 151971195 151971365 GABRE 1 +chrX 151974508 151974678 GABRE 1 +chrX 152115136 152115487 MAGEA5 1 +chrX 152134432 152134762 MAGEA10 1 +chrX 152134826 152135749 MAGEA10 1 +chrX 152168174 152168522 GABRA3 1 +chrX 152189789 152190010 GABRA3 1 +chrX 152197683 152197865 GABRA3 1 +chrX 152207960 152208184 GABRA3 1 +chrX 152224682 152224873 GABRA3 1 +chrX 152251054 152251242 GABRA3 1 +chrX 152255810 152256102 GABRA3 1 +chrX 152284532 152284729 GABRA3 1 +chrX 152345538 152345747 GABRA3 1 +chrX 152364495 152364686 GABRA3 1 +chrX 152392233 152392415 GABRA3 1 +chrX 152393407 152393604 GABRA3 1 +chrX 152394426 152394602 GABRA3 1 +chrX 152638230 152638412 GABRQ 1 +chrX 152640296 152640472 GABRQ 1 +chrX 152645475 152645660 GABRQ 1 +chrX 152646866 152647137 GABRQ 1 +chrX 152649176 152649352 GABRQ 1 +chrX 152649680 152649874 GABRQ 1 +chrX 152650436 152650636 GABRQ 1 +chrX 152651498 152651748 GABRQ 1 +chrX 152652606 152653363 GABRQ 1 +chrX 152701220 152701340 MAGEA6 1 +chrX 152736816 152736936 CSAG4 1 +chrX 152736283 152736533 CSAG4 1 +chrX 152736025 152736145 CSAG4 1 +chrX 152732528 152732648 CSAG1 1 +chrX 152767142 152767262 MAGEA3 1 +chrX 152827752 152827961 CETN2 1 +chrX 152828547 152828741 CETN2 1 +chrX 152829097 152829312 CETN2 1 +chrX 152829610 152829810 CETN2 1 +chrX 152830569 152830775 CETN2 1 +chrX 152846191 152846385 NSDHL 1 +chrX 152850255 152850452 NSDHL 1 +chrX 152858700 152858903 NSDHL 1 +chrX 152862595 152862795 NSDHL 1 +chrX 152865843 152866061 NSDHL 1 +chrX 152867467 152867661 NSDHL 1 +chrX 152868752 152869204 NSDHL 1 +chrX 152914342 152914512 ZNF185 1 +chrX 152914671 152914862 ZNF185 1 +chrX 152915010 152915210 ZNF185 1 +chrX 152917034 152917320 ZNF185 1 +chrX 152918042 152918242 ZNF185 1 +chrX 152918988 152919188 ZNF185 1 +chrX 152920344 152920544 ZNF185 1 +chrX 152920639 152920812 ZNF185 1 +chrX 152922051 152922266 ZNF185 1 +chrX 152922601 152922792 ZNF185 1 +chrX 152928517 152928708 ZNF185 1 +chrX 152931558 152931743 ZNF185 1 +chrX 152932770 152932949 ZNF185 1 +chrX 152936296 152936493 ZNF185 1 +chrX 152938027 152938206 ZNF185 1 +chrX 152941590 152941790 ZNF185 1 +chrX 152945340 152945540 ZNF185 1 +chrX 152959772 152959945 ZNF185 1 +chrX 152963853 152964047 ZNF185 1 +chrX 152965368 152965544 ZNF185 1 +chrX 152967087 152967293 ZNF185 1 +chrX 152969362 152969556 ZNF185 1 +chrX 152970376 152970546 ZNF185 1 +chrX 152990125 152991673 PNMA5 1 +chrX 153056955 153058574 PNMA3 1 +chrX 153183178 153183298 MAGEA1 1 +chrX 153182796 153183055 MAGEA1 1 +chrX 153182393 153182741 MAGEA1 1 +chrX 153336616 153336843 ZNF275 1 +chrX 153343271 153343477 ZNF275 1 +chrX 153344026 153344226 ZNF275 1 +chrX 153344619 153344792 ZNF275 1 +chrX 153345435 153345647 ZNF275 1 +chrX 153346863 153348017 ZNF275 1 +chrX 153418178 153418366 ZFP92 1 +chrX 153418635 153418826 ZFP92 1 +chrX 153420113 153420310 ZFP92 1 +chrX 153420680 153421707 ZFP92 1 +chrX 153444657 153445568 TREX2 1 +chrX 153447609 153447904 HAUS7 1 +chrX 153454278 153454502 HAUS7 1 +chrX 153454939 153455121 HAUS7 1 +chrX 153455468 153455763 HAUS7 1 +chrX 153456228 153456662 HAUS7 1 +chrX 153457082 153457276 HAUS7 1 +chrX 153461878 153461998 HAUS7 1 +chrX 153462576 153462776 HAUS7 1 +chrX 153464858 153465046 HAUS7 1 +chrX 153469115 153469297 HAUS7 1 +chrX 153470501 153470698 HAUS7 1 +chrX 153481522 153481932 HAUS7 1 +chrX 153482247 153482426 HAUS7 1 +chrX 153482717 153482923 HAUS7 1 +chrX 153483301 153483498 HAUS7 1 +chrX 153485680 153486037 HAUS7 1 +chrX 153486593 153486855 HAUS7 1 +chrX 153504650 153504912 BGN 1 +chrX 153505233 153505412 BGN 1 +chrX 153505824 153505997 BGN 1 +chrX 153506462 153506659 BGN 1 +chrX 153506800 153507142 BGN 1 +chrX 153508254 153508537 BGN 1 +chrX 153536209 153536406 ATP2B3 1 +chrX 153541318 153541897 ATP2B3 1 +chrX 153542288 153542470 ATP2B3 1 +chrX 153542981 153543166 ATP2B3 1 +chrX 153545978 153546166 ATP2B3 1 +chrX 153547858 153548034 ATP2B3 1 +chrX 153548667 153548879 ATP2B3 1 +chrX 153549543 153549823 ATP2B3 1 +chrX 153550100 153550377 ATP2B3 1 +chrX 153552945 153553216 ATP2B3 1 +chrX 153555999 153556359 ATP2B3 1 +chrX 153556803 153557021 ATP2B3 1 +chrX 153558182 153558358 ATP2B3 1 +chrX 153559702 153559890 ATP2B3 1 +chrX 153560756 153560953 ATP2B3 1 +chrX 153562100 153562297 ATP2B3 1 +chrX 153564845 153565042 ATP2B3 1 +chrX 153569212 153569385 ATP2B3 1 +chrX 153569673 153569876 ATP2B3 1 +chrX 153574652 153574861 ATP2B3 1 +chrX 153580008 153580392 ATP2B3 1 +chrX 153588092 153588212 CCNQ 1 +chrX 153592699 153592819 CCNQ 1 +chrX 153594664 153594784 CCNQ 1 +chrX 153596150 153596270 CCNQ 1 +chrX 153598904 153599178 CCNQ 1 +chrX 153643388 153643558 DUSP9 1 +chrX 153647951 153648406 DUSP9 1 +chrX 153649262 153649767 DUSP9 1 +chrX 153650005 153650371 DUSP9 1 +chrX 153669646 153669849 PNCK 1 +chrX 153670483 153671699 PNCK 1 +chrX 153671880 153672240 PNCK 1 +chrX 153672473 153673257 PNCK 1 +chrX 153673999 153674424 PNCK 1 +chrX 153688493 153688613 SLC6A8 1 +chrX 153692595 153692765 SLC6A8 1 +chrX 153693155 153693325 SLC6A8 1 +chrX 153694582 153694752 SLC6A8 1 +chrX 153694952 153695072 SLC6A8 1 +chrX 153702111 153702231 BCAP31 1 +chrX 153703863 153704075 BCAP31 1 +chrX 153715557 153715745 BCAP31 1 +chrX 153720890 153721072 BCAP31 1 +chrX 153723077 153723730 BCAP31 1 +chrX 153725148 153726225 ABCD1 1 +chrX 153729228 153729671 ABCD1 1 +chrX 153735210 153735413 ABCD1 1 +chrX 153736038 153736472 ABCD1 1 +chrX 153737085 153737261 ABCD1 1 +chrX 153740127 153740336 ABCD1 1 +chrX 153743705 153743825 ABCD1 1 +chrX 153765495 153765686 PLXNB3 1 +chrX 153766227 153766412 PLXNB3 1 +chrX 153766912 153767977 PLXNB3 1 +chrX 153768223 153768435 PLXNB3 1 +chrX 153768849 153769239 PLXNB3 1 +chrX 153769798 153771148 PLXNB3 1 +chrX 153771242 153771602 PLXNB3 1 +chrX 153771918 153772361 PLXNB3 1 +chrX 153772609 153772993 PLXNB3 1 +chrX 153773201 153775416 PLXNB3 1 +chrX 153775526 153775723 PLXNB3 1 +chrX 153775875 153776472 PLXNB3 1 +chrX 153776870 153777722 PLXNB3 1 +chrX 153777966 153778717 PLXNB3 1 +chrX 153778997 153779176 PLXNB3 1 +chrX 153780114 153780563 Intergenic_2663 1 +chrX 153781084 153781906 SRPK3 1 +chrX 153782109 153782279 SRPK3 1 +chrX 153782769 153783292 SRPK3 1 +chrX 153783693 153784373 SRPK3 1 +chrX 153784740 153785568 SRPK3 1 +chrX 153785762 153786534 IDH3G 1 +chrX 153786802 153787153 IDH3G 1 +chrX 153787457 153787657 IDH3G 1 +chrX 153787864 153788203 IDH3G 1 +chrX 153788984 153789211 IDH3G 1 +chrX 153789598 153789819 IDH3G 1 +chrX 153790107 153790310 IDH3G 1 +chrX 153790481 153790654 IDH3G 1 +chrX 153790799 153790996 IDH3G 1 +chrX 153794305 153794816 SSR4 1 +chrX 153796455 153796652 SSR4 1 +chrX 153797440 153797818 SSR4 1 +chrX 153798072 153798248 SSR4 1 +chrX 153798306 153798503 SSR4 1 +chrX 153803262 153804985 PDZD4 1 +chrX 153805081 153805275 PDZD4 1 +chrX 153805446 153805646 PDZD4 1 +chrX 153806061 153806246 PDZD4 1 +chrX 153806723 153806905 PDZD4 1 +chrX 153807262 153807447 PDZD4 1 +chrX 153807866 153808066 PDZD4 1 +chrX 153808335 153808624 PDZD4 1 +chrX 153830178 153830434 PDZD4 1 +chrX 153862552 153862853 L1CAM 1 +chrX 153863385 153863594 L1CAM 1 +chrX 153863858 153864034 L1CAM 1 +chrX 153864329 153865548 L1CAM 1 +chrX 153865736 153865936 L1CAM 1 +chrX 153866641 153867167 L1CAM 1 +chrX 153867408 153867605 L1CAM 1 +chrX 153867861 153869000 L1CAM 1 +chrX 153869569 153870581 L1CAM 1 +chrX 153870749 153871174 L1CAM 1 +chrX 153872158 153872337 L1CAM 1 +chrX 153872484 153872699 L1CAM 1 +chrX 153873173 153873352 L1CAM 1 +chrX 153875589 153875931 L1CAM 1 +chrX 153880669 153880854 L1CAM 1 +chrX 153883767 153884353 L1CAM 1 +chrX 153885371 153885547 L1CAM 1 +chrX 153885723 153885947 L1CAM 1 +chrX 153886864 153887067 LCA10 1 +chrX 153888422 153888714 LCA10 1 +chrX 153904992 153905112 AVPR2 1 +chrX 153905575 153906981 AVPR2 1 +chrX 153907635 153908001 ARHGAP4 1 +chrX 153908971 153909153 ARHGAP4 1 +chrX 153909322 153909516 ARHGAP4 1 +chrX 153909688 153911168 ARHGAP4 1 +chrX 153912626 153912814 ARHGAP4 1 +chrX 153913021 153913938 ARHGAP4 1 +chrX 153918852 153919301 ARHGAP4 1 +chrX 153919463 153919660 ARHGAP4 1 +chrX 153920704 153920886 ARHGAP4 1 +chrX 153920951 153921167 ARHGAP4 1 +chrX 153921321 153921773 ARHGAP4 1 +chrX 153926066 153926251 ARHGAP4 1 +chrX 153929879 153930248 NAA10 1 +chrX 153930768 153930980 NAA10 1 +chrX 153931977 153932153 NAA10 1 +chrX 153932272 153932558 NAA10 1 +chrX 153933829 153934035 NAA10 1 +chrX 153934310 153934513 NAA10 1 +chrX 153934934 153935054 NAA10 1 +chrX 153935183 153935614 RENBP 1 +chrX 153937234 153937354 RENBP 1 +chrX 153940082 153940273 RENBP 1 +chrX 153941399 153941608 RENBP 1 +chrX 153941953 153942141 RENBP 1 +chrX 153942757 153943043 RENBP 1 +chrX 153943516 153944667 RENBP 1 +chrX 153949300 153949660 HCFC1 1 +chrX 153950257 153950644 HCFC1 1 +chrX 153950811 153951020 HCFC1 1 +chrX 153951286 153952114 HCFC1 1 +chrX 153952536 153953118 HCFC1 1 +chrX 153953600 153953782 HCFC1 1 +chrX 153954138 153955615 HCFC1 1 +chrX 153956229 153956509 HCFC1 1 +chrX 153956697 153957137 HCFC1 1 +chrX 153957208 153957509 HCFC1 1 +chrX 153957740 153958248 HCFC1 1 +chrX 153958498 153958707 HCFC1 1 +chrX 153959382 153959555 HCFC1 1 +chrX 153959825 153960422 HCFC1 1 +chrX 153961569 153961748 HCFC1 1 +chrX 153962217 153962417 HCFC1 1 +chrX 153963273 153963464 HCFC1 1 +chrX 153964040 153964228 HCFC1 1 +chrX 153964500 153964691 HCFC1 1 +chrX 153970601 153970911 HCFC1 1 +chrX 153981069 153981257 TMEM187 1 +chrX 153981979 153982976 TMEM187 1 +chrX 154010834 154011084 IRAK1 1 +chrX 154011616 154011970 IRAK1 1 +chrX 154012536 154012721 IRAK1 1 +chrX 154013080 154013517 IRAK1 1 +chrX 154014091 154014368 IRAK1 1 +chrX 154016027 154016221 IRAK1 1 +chrX 154016512 154016715 IRAK1 1 +chrX 154016916 154017104 IRAK1 1 +chrX 154017985 154018342 IRAK1 1 +chrX 154018529 154018723 IRAK1 1 +chrX 154018908 154019926 IRAK1 1 +chrX 154030277 154031467 MECP2 1 +chrX 154032186 154032573 MECP2 1 +chrX 154092216 154092401 MECP2 1 +chrX 154097591 154097782 MECP2 1 +chrX 154144135 154144255 OPN1LW 1 +chrX 154295752 154295940 TKTL1 1 +chrX 154304849 154305372 TKTL1 1 +chrX 154309332 154309508 TKTL1 1 +chrX 154310744 154311193 TKTL1 1 +chrX 154312546 154312740 TKTL1 1 +chrX 154315079 154315288 TKTL1 1 +chrX 154320797 154320997 TKTL1 1 +chrX 154323240 154323428 TKTL1 1 +chrX 154325211 154325411 TKTL1 1 +chrX 154327310 154327892 TKTL1 1 +chrX 154329583 154329774 TKTL1 1 +chrX 154348529 154348987 FLNA 1 +chrX 154349409 154350231 FLNA 1 +chrX 154350910 154351110 FLNA 1 +chrX 154351610 154351789 FLNA 1 +chrX 154351832 154353712 FLNA 1 +chrX 154353916 154355064 FLNA 1 +chrX 154357302 154357668 FLNA 1 +chrX 154358278 154358623 FLNA 1 +chrX 154358893 154360533 FLNA 1 +chrX 154361317 154361837 FLNA 1 +chrX 154361946 154362786 FLNA 1 +chrX 154363950 154365439 FLNA 1 +chrX 154366079 154366904 FLNA 1 +chrX 154367328 154368008 FLNA 1 +chrX 154370885 154371073 FLNA 1 +chrX 154371140 154371325 FLNA 1 +chrX 154379408 154380073 EMD 1 +chrX 154380230 154380436 EMD 1 +chrX 154380825 154381244 EMD 1 +chrX 154398118 154398493 RPL10 1 +chrX 154399259 154399530 RPL10 1 +chrX 154399906 154400026 RPL10 1 +chrX 154400588 154400708 RPL10 1 +chrX 154400893 154401093 RPL10 1 +chrX 154402588 154403683 DNASE1L1 1 +chrX 154404890 154405167 DNASE1L1 1 +chrX 154405331 154405614 DNASE1L1 1 +chrX 154409045 154409236 DNASE1L1 1 +chrX 154411742 154412283 TAZ 1 +chrX 154413057 154413263 TAZ 1 +chrX 154413454 154413639 TAZ 1 +chrX 154413982 154414188 TAZ 1 +chrX 154419505 154419729 TAZ 1 +chrX 154419977 154420266 TAZ 1 +chrX 154420665 154421120 TAZ 1 +chrX 154428670 154429362 ATP6AP1 1 +chrX 154431793 154431990 ATP6AP1 1 +chrX 154432232 154432432 ATP6AP1 1 +chrX 154432865 154433035 ATP6AP1 1 +chrX 154433517 154433702 ATP6AP1 1 +chrX 154434186 154434457 ATP6AP1 1 +chrX 154435066 154435986 ATP6AP1 1 +chrX 154437107 154437384 GDI1 1 +chrX 154438173 154439108 GDI1 1 +chrX 154439662 154440080 GDI1 1 +chrX 154440409 154440612 GDI1 1 +chrX 154441042 154441236 GDI1 1 +chrX 154441677 154441865 GDI1 1 +chrX 154442027 154442802 GDI1 1 +chrX 154444129 154444396 FAM50A 1 +chrX 154445562 154445860 FAM50A 1 +chrX 154446363 154446554 FAM50A 1 +chrX 154448389 154448927 FAM50A 1 +chrX 154449170 154449343 FAM50A 1 +chrX 154449690 154450527 FAM50A 1 +chrX 154460172 154460852 PLXNA3 1 +chrX 154461044 154461638 PLXNA3 1 +chrX 154462058 154462243 PLXNA3 1 +chrX 154463315 154463690 PLXNA3 1 +chrX 154463865 154464456 PLXNA3 1 +chrX 154464650 154465188 PLXNA3 1 +chrX 154465405 154466805 PLXNA3 1 +chrX 154467124 154469534 PLXNA3 1 +chrX 154469641 154469841 PLXNA3 1 +chrX 154469947 154470147 PLXNA3 1 +chrX 154470501 154470686 PLXNA3 1 +chrX 154471126 154471670 PLXNA3 1 +chrX 154472576 154472761 PLXNA3 1 +chrX 154477792 154478140 LAGE3 1 +chrX 154478165 154478463 LAGE3 1 +chrX 154478797 154478994 LAGE3 1 +chrX 154485265 154486265 UBL4A 1 +chrX 154486457 154486642 UBL4A 1 +chrX 154487453 154489105 SLC10A3 1 +chrX 154489959 154490129 SLC10A3 1 +chrX 154506650 154506853 FAM3A 1 +chrX 154507218 154507492 FAM3A 1 +chrX 154507685 154507873 FAM3A 1 +chrX 154508318 154508829 FAM3A 1 +chrX 154511696 154511902 FAM3A 1 +chrX 154512421 154512541 FAM3A 1 +chrX 154512812 154513021 FAM3A 1 +chrX 154515675 154515952 FAM3A 1 +chrX 154531674 154533169 G6PD 1 +chrX 154533613 154533875 G6PD 1 +chrX 154533942 154534465 G6PD 1 +chrX 154535163 154535449 G6PD 1 +chrX 154535953 154536239 G6PD 1 +chrX 154542253 154542441 G6PD 1 +chrX 154545954 154546124 G6PD 1 +chrX 154546817 154547035 G6PD 1 +chrX 154551920 154552117 IKBKG 1 +chrX 154652354 154652705 CTAG2 1 +chrX 154653165 154653356 CTAG2 1 +chrX 154678049 154678326 GAB3 1 +chrX 154679133 154679410 GAB3 1 +chrX 154680020 154680223 GAB3 1 +chrX 154695906 154696094 GAB3 1 +chrX 154697147 154697344 GAB3 1 +chrX 154699203 154699486 GAB3 1 +chrX 154699856 154700083 GAB3 1 +chrX 154712204 154712736 GAB3 1 +chrX 154713220 154713527 GAB3 1 +chrX 154716060 154716429 GAB3 1 +chrX 154750914 154751102 GAB3 1 +chrX 154755830 154755950 Intergenic_2664 1 +chrX 154762755 154762964 DKC1 1 +chrX 154764769 154764981 DKC1 1 +chrX 154765395 154765583 DKC1 1 +chrX 154765792 154766004 DKC1 1 +chrX 154766171 154766392 DKC1 1 +chrX 154766865 154767059 DKC1 1 +chrX 154767260 154767445 DKC1 1 +chrX 154768174 154768608 DKC1 1 +chrX 154769123 154769347 DKC1 1 +chrX 154770733 154770906 DKC1 1 +chrX 154773044 154773220 DKC1 1 +chrX 154774517 154774726 DKC1 1 +chrX 154775005 154775267 DKC1 1 +chrX 154776095 154776283 DKC1 1 +chrX 154776755 154777023 DKC1 1 +chrX 154779099 154779296 MPP1 1 +chrX 154781208 154781414 MPP1 1 +chrX 154781606 154781815 MPP1 1 +chrX 154783327 154783539 MPP1 1 +chrX 154783997 154784200 MPP1 1 +chrX 154784821 154785190 MPP1 1 +chrX 154786276 154786461 MPP1 1 +chrX 154789830 154790036 MPP1 1 +chrX 154790994 154791173 MPP1 1 +chrX 154791716 154791907 MPP1 1 +chrX 154792161 154792388 MPP1 1 +chrX 154799730 154799924 MPP1 1 +chrX 154804616 154804801 MPP1 1 +chrX 154805201 154805463 MPP1 1 +chrX 154823579 154823838 SMIM9 1 +chrX 154829568 154829774 SMIM9 1 +chrX 154830724 154831001 SMIM9 1 +chrX 154837542 154837822 F8 1 +chrX 154860365 154860547 F8 1 +chrX 154861763 154861948 F8 1 +chrX 154863066 154863257 F8 1 +chrX 154896060 154896260 F8 1 +chrX 154899817 154900020 F8 1 +chrX 154901342 154901542 F8 1 +chrX 154901933 154902163 F8 1 +chrX 154903824 154904039 F8 1 +chrX 154904218 154904480 F8 1 +chrX 154904807 154905016 F8 1 +chrX 154906423 154906635 F8 1 +chrX 154928489 154931646 F8 1 +chrX 154947687 154947905 F8 1 +chrX 154953938 154954132 F8 1 +chrX 154957008 154957190 F8 1 +chrX 154961030 154961221 F8 1 +chrX 154965925 154966128 F8 1 +chrX 154966479 154966741 F8 1 +chrX 154969361 154969635 F8 1 +chrX 154984611 154984817 F8 1 +chrX 154987188 154987391 F8 1 +chrX 154993001 154993198 F8 1 +chrX 154996864 154997070 F8 1 +chrX 154999442 154999636 F8 1 +chrX 155022475 155022648 F8 1 +chrX 155026715 155027158 FUNDC2 1 +chrX 155033526 155033646 FUNDC2 1 +chrX 155046521 155046721 FUNDC2 1 +chrX 155047339 155047551 FUNDC2 1 +chrX 155051790 155051910 FUNDC2 1 +chrX 155054730 155054850 FUNDC2 1 +chrX 155061737 155062005 CMC4 1 +chrX 155063901 155064098 CMC4 1 +chrX 155065408 155065996 CMC4 1 +chrX 155071403 155071603 BRCC3 1 +chrX 155072309 155072506 BRCC3 1 +chrX 155073374 155073550 BRCC3 1 +chrX 155077183 155077392 BRCC3 1 +chrX 155078664 155078834 BRCC3 1 +chrX 155089131 155089331 BRCC3 1 +chrX 155090785 155090955 BRCC3 1 +chrX 155099326 155099505 BRCC3 1 +chrX 155116096 155116281 BRCC3 1 +chrX 155116640 155116828 BRCC3 1 +chrX 155120056 155120250 BRCC3 1 +chrX 155216407 155216610 VBP1 1 +chrX 155220114 155220314 VBP1 1 +chrX 155227230 155227427 VBP1 1 +chrX 155228327 155228538 VBP1 1 +chrX 155236125 155236337 VBP1 1 +chrX 155238753 155239021 VBP1 1 +chrX 155260683 155261292 RAB39B 1 +chrX 155264100 155264365 RAB39B 1 +chrX 155277783 155278051 CLIC2 1 +chrX 155279139 155279354 CLIC2 1 +chrX 155279974 155280189 CLIC2 1 +chrX 155298754 155299123 CLIC2 1 +chrX 155334423 155334543 CLIC2 1 +chrX 155348496 155348616 TMLHE-AS1 1 +chrX 155349509 155349630 TMLHE-AS1 1 +chrX 155491617 155491737 TMLHE 1 +chrX 155492630 155492750 TMLHE 1 +chrX 155506869 155507155 TMLHE 1 +chrX 155511620 155511838 TMLHE 1 +chrX 155513970 155514259 TMLHE 1 +chrX 155524368 155524571 TMLHE 1 +chrX 155545028 155545216 TMLHE 1 diff --git a/src/test/resources/ximmer/exomedepth/expected.chr1.counts.tsv b/src/test/resources/ximmer/exomedepth/expected.chr1.counts.tsv new file mode 100644 index 00000000..ae68b315 --- /dev/null +++ b/src/test/resources/ximmer/exomedepth/expected.chr1.counts.tsv @@ -0,0 +1,3 @@ +"chromosome" "start" "end" "exon" "XI001" "XI002" +"chr1" 2781952 2781990 "chr1-2781951-2781990" 8 10 +"chr1" 2781993 2782029 "chr1-2781992-2782029" 25 30 diff --git a/src/test/resources/ximmer/exomedepth/expected.chr2.counts.tsv b/src/test/resources/ximmer/exomedepth/expected.chr2.counts.tsv new file mode 100644 index 00000000..c5f180c8 --- /dev/null +++ b/src/test/resources/ximmer/exomedepth/expected.chr2.counts.tsv @@ -0,0 +1,2 @@ +"chromosome" "start" "end" "exon" "XI001" "XI002" +"chr2" 2782032 2782106 "chr2-2782031-2782106" 28 52 diff --git a/src/test/resources/ximmer/exomedepth/expected.chrX.counts.tsv b/src/test/resources/ximmer/exomedepth/expected.chrX.counts.tsv new file mode 100644 index 00000000..74ab0d7c --- /dev/null +++ b/src/test/resources/ximmer/exomedepth/expected.chrX.counts.tsv @@ -0,0 +1,12 @@ +"chromosome" "start" "end" "exon" "XI001" "XI002" +"chrX" 2789525 2789699 "chrX-2789524-2789699" 36 57 +"chrX" 2794532 2794742 "chrX-2794531-2794742" 72 100 +"chrX" 2830005 2830182 "chrX-2830004-2830182" 35 56 +"chrX" 2843069 2843343 "chrX-2843068-2843343" 60 69 +"chrX" 2854015 2854231 "chrX-2854014-2854231" 72 103 +"chrX" 115640329 115640518 "chrX-115640328-115640518" 100 106 +"chrX" 115643299 115643518 "chrX-115643298-115643518" 46 61 +"chrX" 115644993 115645173 "chrX-115644992-115645173" 70 77 +"chrX" 154993002 154993197 "chrX-154993001-154993197" 69 74 +"chrX" 154996865 154997069 "chrX-154996864-154997069" 66 75 +"chrX" 154999443 154999635 "chrX-154999442-154999635" 89 138 diff --git a/src/test/resources/ximmer/exomedepth/expected_cov_ed_XI001.txt b/src/test/resources/ximmer/exomedepth/expected_cov_ed_XI001.txt new file mode 100644 index 00000000..60c172ab --- /dev/null +++ b/src/test/resources/ximmer/exomedepth/expected_cov_ed_XI001.txt @@ -0,0 +1,6157 @@ +91 +36 +72 +37 +45 +18 +57 +55 +35 +60 +72 +103 +52 +91 +70 +87 +81 +82 +52 +101 +195 +50 +57 +106 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b/src/test/resources/ximmer/xhmm/expected.stats.tsv new file mode 100644 index 00000000..79229a92 --- /dev/null +++ b/src/test/resources/ximmer/xhmm/expected.stats.tsv @@ -0,0 +1,2 @@ +Median Coverage Mean Coverage perc_bases_above_1 perc_bases_above_5 perc_bases_above_10 perc_bases_above_20 perc_bases_above_50 +29 32.1374280362765 99.74308408167445 97.85040893980589 91.94067507064214 70.15106678255798 15.252914996833763 \ No newline at end of file diff --git a/src/test/resources/ximmer/xhmm/expected_calculated_stats.csv b/src/test/resources/ximmer/xhmm/expected_calculated_stats.csv new file mode 100644 index 00000000..8248420e --- /dev/null +++ b/src/test/resources/ximmer/xhmm/expected_calculated_stats.csv @@ -0,0 +1 @@ +27,30,99.6,98,92.3,69.2,13.1 \ No newline at end of file diff --git a/src/test/resources/ximmer/xhmm/expected_mean_coverage.csv b/src/test/resources/ximmer/xhmm/expected_mean_coverage.csv new file mode 100644 index 00000000..512140fe --- /dev/null +++ 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+chrX,155349509,155349630,1.8249999999999993 +chrX,155491617,155491737,8.008403361344538 +chrX,155492630,155492750,10.621848739495798 +chrX,155506869,155507155,18.557894736842126 +chrX,155511620,155511838,17.571428571428573 +chrX,155513970,155514259,17.000000000000007 +chrX,155524368,155524571,16.767326732673276 +chrX,155545028,155545216,23.946524064171133 \ No newline at end of file diff --git a/src/test/scala/org/biodatageeks/sequila/tests/ximmer/PerBaseCoverageTest.scala b/src/test/scala/org/biodatageeks/sequila/tests/ximmer/PerBaseCoverageTest.scala new file mode 100644 index 00000000..a429ccb7 --- /dev/null +++ b/src/test/scala/org/biodatageeks/sequila/tests/ximmer/PerBaseCoverageTest.scala @@ -0,0 +1,73 @@ +/** + * Created by Krzysztof Kobyliński + */ +package org.biodatageeks.sequila.tests.ximmer + +import com.holdenkarau.spark.testing.{DataFrameSuiteBase, SharedSparkContext} +import org.apache.spark.sql.SequilaSession +import org.biodatageeks.sequila.apps.PileupApp.createSparkSessionWithExtraStrategy +import org.biodatageeks.sequila.ximmer.PerBaseCoverage +import org.junit.Assert.assertEquals +import org.scalatest.{BeforeAndAfter, FunSuite} + +class PerBaseCoverageTest extends FunSuite + with DataFrameSuiteBase + with SharedSparkContext + with BeforeAndAfter { + + val ximmerResourceDir: String = getClass.getResource("/ximmer").getPath + val refPath: String = getClass.getResource("/NA12878.slice.fasta").getPath + + test("Test calculated perBaseCoverage and meanCoverage") { + val spark = createSparkSessionWithExtraStrategy() + val ss = SequilaSession(spark) + val targetsPath = ximmerResourceDir + "/coverage_test_input/hg38.bed" + val bamFile = ximmerResourceDir + "/coverage_test_input/XI001.hg38.sorted.bam" + val expectedMeanCoverage = scala.io.Source.fromFile(ximmerResourceDir + "/xhmm/expected_mean_coverage.csv").bufferedReader() + val expectedStats = scala.io.Source.fromFile(ximmerResourceDir + "/xhmm/expected_calculated_stats.csv").bufferedReader() + //when + val result = new PerBaseCoverage().calculatePerBaseCoverage(ss, List(bamFile), targetsPath, refPath) + //then + assertEquals("XI001", result.head._1) + val meanCoverageDF = result.head._2._1 + val statsDF = result.head._2._2 + + //Differences here are due to fact that gngs shorten reads - replace alignmentEnd while reading bam with mateStart + meanCoverageDF.collect().foreach(row => { + val lineElements = expectedMeanCoverage.readLine().split(",") + val expectedChr = lineElements(0) + val expectedStart = lineElements(1).toInt + val expectedEnd = lineElements(2).toInt + val expectedCov = lineElements(3).toDouble + + assertEquals(expectedChr, row.getString(0)) + assertEquals(expectedStart, row.getString(1).toInt) + assertEquals(expectedEnd, row.getString(2).toInt) + + val percDiff = (row.getDouble(3) / expectedCov - 1) * 100 + val diff = row.getDouble(3) / expectedCov + val bothEqualsZero = row.getDouble(3) == 0 && expectedCov == 0 + assertTrue(bothEqualsZero || percDiff < 13 || diff <= 3) + }) + + val expectedStatsLine = expectedStats.readLine().split(",") + val row = statsDF.first() + val median = row.getShort(0) + val mean = row.getDouble(1) + val countNr = row.getLong(2).toDouble + val perc_bases_above_1 = row.getLong(3) / countNr * 100 + val perc_bases_above_5 = row.getLong(4) / countNr * 100 + val perc_bases_above_10 = row.getLong(5) / countNr * 100 + val perc_bases_above_20 = row.getLong(6) / countNr * 100 + val perc_bases_above_50 = row.getLong(7) / countNr * 100 + assertTrue(median - expectedStatsLine(0).toInt <= 2) + assertTrue(mean - expectedStatsLine(1).toDouble <= 2.2) + assertTrue(perc_bases_above_1 - expectedStatsLine(2).toDouble <= 0.2) + assertTrue(expectedStatsLine(3).toDouble - perc_bases_above_5 <= 0.2) + assertTrue(perc_bases_above_10 - expectedStatsLine(4).toDouble <= 2) + assertTrue(perc_bases_above_20 - expectedStatsLine(5).toDouble <= 2) + assertTrue(perc_bases_above_50 - expectedStatsLine(6).toDouble <= 2.2) + + expectedMeanCoverage.close();expectedStats.close() + } +} diff --git a/src/test/scala/org/biodatageeks/sequila/tests/ximmer/TargetsCountTest.scala b/src/test/scala/org/biodatageeks/sequila/tests/ximmer/TargetsCountTest.scala new file mode 100644 index 00000000..604b148e --- /dev/null +++ b/src/test/scala/org/biodatageeks/sequila/tests/ximmer/TargetsCountTest.scala @@ -0,0 +1,71 @@ +/** + * Created by Krzysztof Kobyliński + */ +package org.biodatageeks.sequila.tests.ximmer + +import com.holdenkarau.spark.testing.{DataFrameSuiteBase, SharedSparkContext} +import org.biodatageeks.sequila.apps.PileupApp.createSparkSessionWithExtraStrategy +import org.biodatageeks.sequila.ximmer.TargetCounts +import org.junit.Assert.assertEquals +import org.scalactic.{Equality, TolerantNumerics} +import org.scalatest.{BeforeAndAfter, FunSuite} + +class TargetsCountTest extends FunSuite + with DataFrameSuiteBase + with SharedSparkContext + with BeforeAndAfter { + + val ximmerResourceDir: String = getClass.getResource("/ximmer").getPath + + test("Test calculated coverage for Codex, cnmops, exomedepth, conifer") { + //given + val spark = createSparkSessionWithExtraStrategy() + val targetsPath = ximmerResourceDir + "/coverage_test_input/hg38.bed" + val bamFile = ximmerResourceDir + "/coverage_test_input/XI001.hg38.sorted.bam" + val expectedCnmops = scala.io.Source.fromFile(ximmerResourceDir + "/cnmops/expected_cov_cnmops_XI001.txt").bufferedReader() + val expectedCodex = scala.io.Source.fromFile(ximmerResourceDir + "/codex/expected_cov_codex_XI001.txt").bufferedReader() + val expectedConifer = scala.io.Source.fromFile(ximmerResourceDir + "/conifer/expected_cov_conifer_XI001.txt").bufferedReader() + val expectedExomeDepth = scala.io.Source.fromFile(ximmerResourceDir + "/exomedepth/expected_cov_ed_XI001.txt").bufferedReader() + val epsilon = 1 + implicit val longEq: Equality[Long] = TolerantNumerics.tolerantLongEquality(epsilon) + //when + val result = new TargetCounts().calculateTargetCounts(spark, targetsPath, List(bamFile), saveBamInfo = true) + //then + var errorsCodex = 0 + var errorsConifer = 0 + + assertEquals("XI001", result.head._1) + assertEquals(626359, result.head._2._2) + val resultDF = result.head._2._1 + resultDF.collect().foreach(row => { + val expectedCnmopsCov = expectedCnmops.readLine().toLong + val expectedCodexCov = expectedCodex.readLine().toLong + val expectedConiferCov = expectedConifer.readLine().toLong + val expectedExomeDepthCov = expectedExomeDepth.readLine().toLong + + val resultCodexCov = row.getLong(3) + val resultCnmopsCov = row.getLong(4) + val resultExomedepthCov = row.getLong(5) + val resultConiferCov = row.getLong(6) + + assertEquals(resultCnmopsCov, expectedCnmopsCov) + assertEquals(resultExomedepthCov, expectedExomeDepthCov) + // Differences here comes from calculate read length method. When Codex calculate length from "CIGAR" fields, does not + // count deletes, sequilla does. Reads in Codex may be shorter and that's why in 2 targets coverage is smaller + if (!(resultCodexCov == expectedCodexCov)) { + assertTrue(resultCodexCov - expectedCodexCov == 1) + errorsCodex += 1 + } + //Differences here are because conifer read contig from "referenceName" fields instead of "contig". + //When read is unmapped, contig is null and is filter out in sequila, but referenceName may be filled and counted in Conifer + if (!(resultConiferCov === expectedConiferCov)) { + assertTrue((resultConiferCov / expectedConiferCov.toDouble) >= 0.984) + errorsConifer += 1 + } + }) + assertEquals(2, errorsCodex) + assertEquals(3, errorsConifer) + + expectedCnmops.close();expectedCodex.close();expectedConifer.close();expectedExomeDepth.close() + } +} diff --git a/src/test/scala/org/biodatageeks/sequila/tests/ximmer/converters/CnMopsConverterTest.scala b/src/test/scala/org/biodatageeks/sequila/tests/ximmer/converters/CnMopsConverterTest.scala new file mode 100644 index 00000000..c0fdaeea --- /dev/null +++ b/src/test/scala/org/biodatageeks/sequila/tests/ximmer/converters/CnMopsConverterTest.scala @@ -0,0 +1,24 @@ +/** + * Created by Krzysztof Kobyliński + */ +package org.biodatageeks.sequila.tests.ximmer.converters + +import org.biodatageeks.sequila.ximmer.converters.CnMopsConverter +import org.skyscreamer.jsonassert.{JSONAssert, JSONCompareMode} + +class CnMopsConverterTest extends XimmerConverterTestBase { + + test("Convert to cnmops format") { + //given + val expectedJson = scala.io.Source.fromFile(ximmerResourceDir + "/cnmops/expected.cnmops.json") + //when + new CnMopsConverter().convertToCnMopsFormat(targetCountsResult, tempDir) + //then + val result = scala.io.Source.fromFile(tempDir + "/analysis.cnmops.cnvs.json") + + JSONAssert.assertEquals(expectedJson.mkString, result.mkString, JSONCompareMode.NON_EXTENSIBLE) + + expectedJson.close() + result.close() + } +} diff --git a/src/test/scala/org/biodatageeks/sequila/tests/ximmer/converters/CodexConverterTest.scala b/src/test/scala/org/biodatageeks/sequila/tests/ximmer/converters/CodexConverterTest.scala new file mode 100644 index 00000000..5fc48c04 --- /dev/null +++ b/src/test/scala/org/biodatageeks/sequila/tests/ximmer/converters/CodexConverterTest.scala @@ -0,0 +1,31 @@ +/** + * Created by Krzysztof Kobyliński + */ +package org.biodatageeks.sequila.tests.ximmer.converters + +import org.biodatageeks.sequila.ximmer.converters.CodexConverter +import org.skyscreamer.jsonassert.{JSONAssert, JSONCompareMode} + +class CodexConverterTest extends XimmerConverterTestBase { + + test("Convert to codex format") { + //given + val expectedChr1 = scala.io.Source.fromFile(ximmerResourceDir + "/codex/expected.codex_coverage.chr1.json") + val expectedChr2 = scala.io.Source.fromFile(ximmerResourceDir + "/codex/expected.codex_coverage.chr2.json") + val expectedChrX = scala.io.Source.fromFile(ximmerResourceDir + "/codex/expected.codex_coverage.chrX.json") + //when + new CodexConverter().convertToCodexFormat(targetCountsResult, tempDir) + //then + val resultChr1 = scala.io.Source.fromFile(tempDir + "/analysis.codex_coverage.chr1.json") + val resultChr2 = scala.io.Source.fromFile(tempDir + "/analysis.codex_coverage.chr2.json") + val resultChrX = scala.io.Source.fromFile(tempDir + "/analysis.codex_coverage.chrX.json") + + JSONAssert.assertEquals(expectedChr1.mkString, resultChr1.mkString, JSONCompareMode.NON_EXTENSIBLE) + JSONAssert.assertEquals(expectedChr2.mkString, resultChr2.mkString, JSONCompareMode.NON_EXTENSIBLE) + JSONAssert.assertEquals(expectedChrX.mkString, resultChrX.mkString, JSONCompareMode.NON_EXTENSIBLE) + + expectedChr1.close(); expectedChr2.close(); expectedChrX.close() + resultChr1.close(); resultChr2.close(); resultChrX.close() + } + +} diff --git a/src/test/scala/org/biodatageeks/sequila/tests/ximmer/converters/ConiferConverterTest.scala b/src/test/scala/org/biodatageeks/sequila/tests/ximmer/converters/ConiferConverterTest.scala new file mode 100644 index 00000000..f976fea0 --- /dev/null +++ b/src/test/scala/org/biodatageeks/sequila/tests/ximmer/converters/ConiferConverterTest.scala @@ -0,0 +1,24 @@ +/** + * Created by Krzysztof Kobyliński + */ +package org.biodatageeks.sequila.tests.ximmer.converters + +import org.biodatageeks.sequila.ximmer.converters.ConiferConverter + +class ConiferConverterTest extends XimmerConverterTestBase { + + test("Convert to conifer format") { + //given + val expected = scala.io.Source.fromFile(ximmerResourceDir + "/conifer/expected.XI001.rpkm") + //when + new ConiferConverter().convertToConiferFormat(targetCountsResult.head, tempDir) + //then + val result = scala.io.Source.fromFile(tempDir + "/XI001.rpkm") + + assert(expected.getLines().mkString == result.getLines().mkString) + + expected.close() + result.close() + } + +} \ No newline at end of file diff --git a/src/test/scala/org/biodatageeks/sequila/tests/ximmer/converters/ExomeDepthConverterTest.scala b/src/test/scala/org/biodatageeks/sequila/tests/ximmer/converters/ExomeDepthConverterTest.scala new file mode 100644 index 00000000..a9d4b8e0 --- /dev/null +++ b/src/test/scala/org/biodatageeks/sequila/tests/ximmer/converters/ExomeDepthConverterTest.scala @@ -0,0 +1,31 @@ +/** + * Created by Krzysztof Kobyliński + */ +package org.biodatageeks.sequila.tests.ximmer.converters + +import org.biodatageeks.sequila.ximmer.converters.ExomeDepthConverter + +class ExomeDepthConverterTest extends XimmerConverterTestBase { + + test("Convert to exomeDepth format") { + //given + val expectedChr1Json = scala.io.Source.fromFile(ximmerResourceDir + "/exomedepth/expected.chr1.counts.tsv") + val expectedChr2Json = scala.io.Source.fromFile(ximmerResourceDir + "/exomedepth/expected.chr2.counts.tsv") + val expectedChrXJson = scala.io.Source.fromFile(ximmerResourceDir + "/exomedepth/expected.chrX.counts.tsv") + //when + new ExomeDepthConverter().convertToExomeDepthFormat(targetCountsResult, tempDir) + //then + val resultChr1 = scala.io.Source.fromFile(tempDir + "/analysis.chr1.counts.tsv") + val resultChr2 = scala.io.Source.fromFile(tempDir + "/analysis.chr2.counts.tsv") + val resultChrX = scala.io.Source.fromFile(tempDir + "/analysis.chrX.counts.tsv") + + assert(expectedChr1Json.getLines().mkString == resultChr1.getLines().mkString) + assert(expectedChr2Json.getLines().mkString == resultChr2.getLines().mkString) + assert(expectedChrXJson.getLines().mkString == resultChrX.getLines().mkString) + + expectedChr1Json.close(); expectedChr2Json.close(); expectedChrXJson.close() + resultChr1.close(); resultChr2.close(); resultChrX.close() + } + +} + diff --git a/src/test/scala/org/biodatageeks/sequila/tests/ximmer/converters/GngsConverterTest.scala b/src/test/scala/org/biodatageeks/sequila/tests/ximmer/converters/GngsConverterTest.scala new file mode 100644 index 00000000..61c53cb9 --- /dev/null +++ b/src/test/scala/org/biodatageeks/sequila/tests/ximmer/converters/GngsConverterTest.scala @@ -0,0 +1,73 @@ +/** + * Created by Krzysztof Kobyliński + */ +package org.biodatageeks.sequila.tests.ximmer.converters + +import com.holdenkarau.spark.testing.{DataFrameSuiteBase, SharedSparkContext} +import org.apache.spark.sql.types._ +import org.biodatageeks.sequila.ximmer.converters.GngsConverter +import org.biodatageeks.sequila.utils.InternalParams +import org.scalatest.{BeforeAndAfter, FunSuite} + +import java.io.File +import scala.reflect.io.Directory + +class GngsConverterTest extends FunSuite + with DataFrameSuiteBase + with SharedSparkContext + with BeforeAndAfter { + + val tempDir = "src/test/resources/ximmer/temp" + val ximmerResourceDir = "src/test/resources/ximmer" + val meanCoverageSchema: StructType = StructType( + Seq(StructField("chr", StringType), + StructField("start", StringType), + StructField("end", StringType), + StructField("mean_cov", DoubleType))) + val statsSchema: StructType = StructType( + Seq(StructField("median", ShortType), + StructField("mean", DoubleType), + StructField("readsNr", LongType), + StructField("above1", LongType), + StructField("above5", LongType), + StructField("above10", LongType), + StructField("above20", LongType), + StructField("above50", LongType))) + + before { + val directory = new Directory(new File(tempDir)) + directory.createDirectory() + } + + test("Convert to xhmm format") { + //given + spark.conf.set(InternalParams.saveAsSparkFormat, "false") + val meanCoverageDF = spark.read + .option("header", "false") + .schema(meanCoverageSchema) + .csv(ximmerResourceDir + "/converter_tests_input/mean_coverage_XI001.csv") + val statsDF = spark.read + .option("header", "false") + .schema(statsSchema) + .csv(ximmerResourceDir + "/converter_tests_input/stats_XI001.csv") + val expectedStats = scala.io.Source.fromFile(ximmerResourceDir + "/xhmm/expected.stats.tsv") + val expectedSummary = scala.io.Source.fromFile(ximmerResourceDir + "/xhmm/expected.sample_interval_summary") + //when + new GngsConverter().calculateStatsAndConvertToGngsFormat(tempDir, "XI001", meanCoverageDF, statsDF) + //then + val resultStats = scala.io.Source.fromFile(tempDir + "/XI001.stats.tsv") + val resultSummary = scala.io.Source.fromFile(tempDir + "/XI001.calc_target_covs.sample_interval_summary") + + assert(resultStats.getLines().mkString.trim == expectedStats.getLines().mkString) + assert(resultSummary.getLines().mkString.trim == expectedSummary.getLines().mkString) + + expectedStats.close(); expectedSummary.close + resultStats.close(); resultSummary.close + } + + after { + val directory = new Directory(new File(tempDir)) + directory.deleteRecursively() + } + +} diff --git a/src/test/scala/org/biodatageeks/sequila/tests/ximmer/converters/XimmerConverterTestBase.scala b/src/test/scala/org/biodatageeks/sequila/tests/ximmer/converters/XimmerConverterTestBase.scala new file mode 100644 index 00000000..16248cfd --- /dev/null +++ b/src/test/scala/org/biodatageeks/sequila/tests/ximmer/converters/XimmerConverterTestBase.scala @@ -0,0 +1,56 @@ +/** + * Created by Krzysztof Kobyliński + */ +package org.biodatageeks.sequila.tests.ximmer.converters + +import com.holdenkarau.spark.testing.{DataFrameSuiteBase, SharedSparkContext} +import org.apache.spark.sql.Row +import org.apache.spark.sql.types.{LongType, StringType, StructField, StructType} +import org.biodatageeks.sequila.utils.InternalParams +import org.scalatest.{BeforeAndAfter, FunSuite} + +import java.io.File +import scala.collection.mutable +import scala.reflect.io.Directory + +class XimmerConverterTestBase extends FunSuite + with DataFrameSuiteBase + with SharedSparkContext + with BeforeAndAfter { + + val tempDir = "src/test/resources/ximmer/temp" + val ximmerResourceDir = "src/test/resources/ximmer" + val targetCountsResult: mutable.Map[String, (Array[Row], Long)] = mutable.SortedMap[String, (Array[Row], Long)]() + + val schema = StructType( + Seq(StructField("chr", StringType), + StructField("start", StringType), + StructField("end", StringType), + StructField("codex_cov", LongType), + StructField("cnmops_cov", LongType), + StructField("ed_cov", LongType), + StructField("conifer_cov", LongType))) + + before { + val directory = new Directory(new File(tempDir)) + directory.createDirectory() + + val df1 = spark.read + .option("header", "false") + .schema(schema) + .csv(ximmerResourceDir + "/converter_tests_input/target_counts_XI001.csv") + val df2 = spark.read + .option("header", "false") + .schema(schema) + .csv(ximmerResourceDir + "/converter_tests_input/target_counts_XI002.csv") + targetCountsResult += ("XI001" -> (df1.collect(), 735229)) + targetCountsResult += ("XI002" -> (df2.collect(), 930845)) + + spark.conf.set(InternalParams.saveAsSparkFormat, "false") + } + + after { + val directory = new Directory(new File(tempDir)) + directory.deleteRecursively() + } +}