From c3630faa169bdcd6309e5709874c109866da354e Mon Sep 17 00:00:00 2001
From: marek <you@example.com>
Date: Mon, 15 Sep 2014 21:17:43 +0200
Subject: [PATCH] Migration to Apache Spark 1.1

---
 .idea/workspace.xml     | 198 ++++++++++++++++++++++------------------
 sparkseq-core/build.sbt |   2 +-
 2 files changed, 112 insertions(+), 88 deletions(-)

diff --git a/.idea/workspace.xml b/.idea/workspace.xml
index bc991b8..27cd518 100644
--- a/.idea/workspace.xml
+++ b/.idea/workspace.xml
@@ -2,20 +2,6 @@
 <project version="4">
   <component name="ChangeListManager">
     <list default="true" id="a0bbe073-1f6e-420c-9660-eda60a11a036" name="Default" comment="">
-      <change type="DELETED" beforePath="$PROJECT_DIR$/.idea/uiDesigner.xml" afterPath="" />
-      <change type="DELETED" beforePath="$PROJECT_DIR$/.idea_modules/sparkseq-build.iml" afterPath="" />
-      <change type="DELETED" beforePath="$PROJECT_DIR$/.idea_modules/sparkseq-core.iml" afterPath="" />
-      <change type="DELETED" beforePath="$PROJECT_DIR$/.idea_modules/sparkseq-repl.iml" afterPath="" />
-      <change type="DELETED" beforePath="$PROJECT_DIR$/.idea_modules/sparkseq.iml" afterPath="" />
-      <change type="MODIFICATION" beforePath="$PROJECT_DIR$/sparkseq-core/src/main/scala/pl/elka/pw/sparkseq/seqAnalysis/SparkSeqAnalysis.scala" afterPath="$PROJECT_DIR$/sparkseq-core/src/main/scala/pl/elka/pw/sparkseq/seqAnalysis/SparkSeqAnalysis.scala" />
-      <change type="MODIFICATION" beforePath="$PROJECT_DIR$/sparkseq-core/src/main/scala/pl/elka/pw/sparkseq/SparkSeqBaseDE.scala" afterPath="$PROJECT_DIR$/sparkseq-core/src/main/scala/pl/elka/pw/sparkseq/SparkSeqBaseDE.scala" />
-      <change type="MODIFICATION" beforePath="$PROJECT_DIR$/sparkseq-core/src/main/scala/pl/elka/pw/sparkseq/differentialExpression/SparkSeqDiffExpr.scala" afterPath="$PROJECT_DIR$/sparkseq-core/src/main/scala/pl/elka/pw/sparkseq/differentialExpression/SparkSeqDiffExpr.scala" />
-      <change type="MODIFICATION" beforePath="$PROJECT_DIR$/sparkseq-core/src/main/scala/pl/elka/pw/sparkseq/junctions/SparkSeqJunctionAnalysis.scala" afterPath="$PROJECT_DIR$/sparkseq-core/src/main/scala/pl/elka/pw/sparkseq/junctions/SparkSeqJunctionAnalysis.scala" />
-      <change type="MODIFICATION" beforePath="$PROJECT_DIR$/sparkseq-core/src/main/scala/pl/elka/pw/sparkseq/serialization/SparkSeqKryoRegistrator.scala" afterPath="$PROJECT_DIR$/sparkseq-core/src/main/scala/pl/elka/pw/sparkseq/serialization/SparkSeqKryoRegistrator.scala" />
-      <change type="MODIFICATION" beforePath="$PROJECT_DIR$/sparkseq-core/src/main/scala/pl/elka/pw/sparkseq/SparkSeqSimpleJob.scala" afterPath="$PROJECT_DIR$/sparkseq-core/src/main/scala/pl/elka/pw/sparkseq/SparkSeqSimpleJob.scala" />
-      <change type="MODIFICATION" beforePath="$PROJECT_DIR$/build.sbt" afterPath="$PROJECT_DIR$/build.sbt" />
-      <change type="MODIFICATION" beforePath="$PROJECT_DIR$/sparkseq-core/build.sbt" afterPath="$PROJECT_DIR$/sparkseq-core/build.sbt" />
-      <change type="MODIFICATION" beforePath="$PROJECT_DIR$/sparkseq-repl/build.sbt" afterPath="$PROJECT_DIR$/sparkseq-repl/build.sbt" />
       <change type="MODIFICATION" beforePath="$PROJECT_DIR$/.idea/workspace.xml" afterPath="$PROJECT_DIR$/.idea/workspace.xml" />
     </list>
     <ignored path="sparkseq.iws" />
@@ -42,11 +28,9 @@
       <file leaf-file-name="SparkSeqAnalysis.scala" pinned="false" current="true" current-in-tab="true">
         <entry file="file://$PROJECT_DIR$/sparkseq-core/src/main/scala/pl/elka/pw/sparkseq/seqAnalysis/SparkSeqAnalysis.scala">
           <provider selected="true" editor-type-id="text-editor">
-            <state vertical-scroll-proportion="0.36256325" vertical-offset="10450" max-vertical-offset="14625">
+            <state vertical-scroll-proportion="0.0" vertical-offset="10440" max-vertical-offset="14400">
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-              <folding>
-                <element signature="e#642#678#0" expanded="true" />
-              </folding>
+              <folding />
             </state>
           </provider>
         </entry>
@@ -54,7 +38,7 @@
       <file leaf-file-name="SparkSeqKryoRegistrator.scala" pinned="false" current="false" current-in-tab="false">
         <entry file="file://$PROJECT_DIR$/sparkseq-core/src/main/scala/pl/elka/pw/sparkseq/serialization/SparkSeqKryoRegistrator.scala">
           <provider selected="true" editor-type-id="text-editor">
-            <state vertical-scroll-proportion="0.0" vertical-offset="0" max-vertical-offset="435">
+            <state vertical-scroll-proportion="0.0" vertical-offset="480" max-vertical-offset="645">
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               <folding />
             </state>
@@ -64,11 +48,9 @@
       <file leaf-file-name="SparkSeqJunctionAnalysis.scala" pinned="false" current="false" current-in-tab="false">
         <entry file="file://$PROJECT_DIR$/sparkseq-core/src/main/scala/pl/elka/pw/sparkseq/junctions/SparkSeqJunctionAnalysis.scala">
           <provider selected="true" editor-type-id="text-editor">
-            <state vertical-scroll-proportion="0.0" vertical-offset="1042" max-vertical-offset="1695">
+            <state vertical-scroll-proportion="0.0" vertical-offset="1815" max-vertical-offset="1905">
               <caret line="121" column="0" selection-start-line="121" selection-start-column="0" selection-end-line="121" selection-end-column="0" />
-              <folding>
-                <element signature="e#641#677#0" expanded="true" />
-              </folding>
+              <folding />
             </state>
           </provider>
         </entry>
@@ -76,7 +58,7 @@
       <file leaf-file-name="SAMRecord.class" pinned="false" current="false" current-in-tab="false">
         <entry file="jar://$USER_HOME$/.ivy2/cache/org.seqdoop/htsjdk/jars/htsjdk-1.118.jar!/htsjdk/samtools/SAMRecord.class">
           <provider selected="true" editor-type-id="text-editor">
-            <state vertical-scroll-proportion="-3.0" vertical-offset="0" max-vertical-offset="5085">
+            <state vertical-scroll-proportion="0.0" vertical-offset="90" max-vertical-offset="5100">
               <caret line="6" column="13" selection-start-line="6" selection-start-column="13" selection-end-line="6" selection-end-column="13" />
               <folding />
             </state>
@@ -86,7 +68,7 @@
       <file leaf-file-name="SparkSeqBaseDE.scala" pinned="false" current="false" current-in-tab="false">
         <entry file="file://$PROJECT_DIR$/sparkseq-core/src/main/scala/pl/elka/pw/sparkseq/SparkSeqBaseDE.scala">
           <provider selected="true" editor-type-id="text-editor">
-            <state vertical-scroll-proportion="0.0" vertical-offset="0" max-vertical-offset="2100">
+            <state vertical-scroll-proportion="0.0" vertical-offset="345" max-vertical-offset="2310">
               <caret line="23" column="7" selection-start-line="23" selection-start-column="7" selection-end-line="23" selection-end-column="7" />
               <folding />
             </state>
@@ -98,9 +80,7 @@
           <provider selected="true" editor-type-id="text-editor">
             <state vertical-scroll-proportion="0.0" vertical-offset="0" max-vertical-offset="2775">
               <caret line="0" column="0" selection-start-line="0" selection-start-column="0" selection-end-line="0" selection-end-column="0" />
-              <folding>
-                <element signature="e#55#91#0" expanded="true" />
-              </folding>
+              <folding />
             </state>
           </provider>
         </entry>
@@ -108,12 +88,9 @@
       <file leaf-file-name="SparkSeqDiffExpr.scala" pinned="false" current="false" current-in-tab="false">
         <entry file="file://$PROJECT_DIR$/sparkseq-core/src/main/scala/pl/elka/pw/sparkseq/differentialExpression/SparkSeqDiffExpr.scala">
           <provider selected="true" editor-type-id="text-editor">
-            <state vertical-scroll-proportion="-0.0" vertical-offset="0" max-vertical-offset="10770">
+            <state vertical-scroll-proportion="0.0" vertical-offset="0" max-vertical-offset="10770">
               <caret line="0" column="0" selection-start-line="0" selection-start-column="0" selection-end-line="0" selection-end-column="0" />
-              <folding>
-                <element signature="n#!!doc" expanded="true" />
-                <element signature="e#653#737#0" expanded="true" />
-              </folding>
+              <folding />
             </state>
           </provider>
         </entry>
@@ -173,7 +150,6 @@
     </navigator>
     <panes>
       <pane id="Scope" />
-      <pane id="PackagesPane" />
       <pane id="ProjectPane">
         <subPane>
           <PATH>
@@ -380,6 +356,7 @@
           </PATH>
         </subPane>
       </pane>
+      <pane id="PackagesPane" />
     </panes>
   </component>
   <component name="PropertiesComponent">
@@ -419,6 +396,14 @@
       <option name="FILTER_LOGCAT_AUTOMATICALLY" value="true" />
       <method />
     </configuration>
+    <configuration default="true" type="Remote" factoryName="Remote">
+      <option name="USE_SOCKET_TRANSPORT" value="true" />
+      <option name="SERVER_MODE" value="false" />
+      <option name="SHMEM_ADDRESS" value="javadebug" />
+      <option name="HOST" value="localhost" />
+      <option name="PORT" value="5005" />
+      <method />
+    </configuration>
     <configuration default="true" type="Specs2RunConfiguration" factoryName="Specs2">
       <module name="" />
       <setting name="path" value="" />
@@ -432,27 +417,6 @@
       <setting name="showProgressMessages" value="true" />
       <method />
     </configuration>
-    <configuration default="true" type="Remote" factoryName="Remote">
-      <option name="USE_SOCKET_TRANSPORT" value="true" />
-      <option name="SERVER_MODE" value="false" />
-      <option name="SHMEM_ADDRESS" value="javadebug" />
-      <option name="HOST" value="localhost" />
-      <option name="PORT" value="5005" />
-      <method />
-    </configuration>
-    <configuration default="true" type="Applet" factoryName="Applet">
-      <module name="" />
-      <option name="MAIN_CLASS_NAME" />
-      <option name="HTML_FILE_NAME" />
-      <option name="HTML_USED" value="false" />
-      <option name="WIDTH" value="400" />
-      <option name="HEIGHT" value="300" />
-      <option name="POLICY_FILE" value="$APPLICATION_HOME_DIR$/bin/appletviewer.policy" />
-      <option name="VM_PARAMETERS" />
-      <option name="ALTERNATIVE_JRE_PATH_ENABLED" value="false" />
-      <option name="ALTERNATIVE_JRE_PATH" />
-      <method />
-    </configuration>
     <configuration default="true" type="TestNG" factoryName="TestNG">
       <module name="" />
       <option name="ALTERNATIVE_JRE_PATH_ENABLED" value="false" />
@@ -480,6 +444,19 @@
       <listeners />
       <method />
     </configuration>
+    <configuration default="true" type="Applet" factoryName="Applet">
+      <module name="" />
+      <option name="MAIN_CLASS_NAME" />
+      <option name="HTML_FILE_NAME" />
+      <option name="HTML_USED" value="false" />
+      <option name="WIDTH" value="400" />
+      <option name="HEIGHT" value="300" />
+      <option name="POLICY_FILE" value="$APPLICATION_HOME_DIR$/bin/appletviewer.policy" />
+      <option name="VM_PARAMETERS" />
+      <option name="ALTERNATIVE_JRE_PATH_ENABLED" value="false" />
+      <option name="ALTERNATIVE_JRE_PATH" />
+      <method />
+    </configuration>
     <configuration default="true" type="Application" factoryName="Application">
       <option name="MAIN_CLASS_NAME" />
       <option name="VM_PARAMETERS" />
@@ -527,19 +504,6 @@
       <patterns />
       <method />
     </configuration>
-    <configuration default="true" type="ScalaTestRunConfiguration" factoryName="ScalaTest">
-      <module name="" />
-      <setting name="path" value="" />
-      <setting name="package" value="" />
-      <setting name="vmparams" value="" />
-      <setting name="params" value="" />
-      <setting name="workingDirectory" value="$PROJECT_DIR$" />
-      <setting name="searchForTest" value="Across module dependencies" />
-      <setting name="testName" value="" />
-      <setting name="testKind" value="Class" />
-      <setting name="showProgressMessages" value="true" />
-      <method />
-    </configuration>
     <configuration default="true" type="AndroidRunConfigurationType" factoryName="Android Application">
       <module name="" />
       <option name="ACTIVITY_CLASS" value="" />
@@ -560,6 +524,19 @@
       <option name="FILTER_LOGCAT_AUTOMATICALLY" value="true" />
       <method />
     </configuration>
+    <configuration default="true" type="ScalaTestRunConfiguration" factoryName="ScalaTest">
+      <module name="" />
+      <setting name="path" value="" />
+      <setting name="package" value="" />
+      <setting name="vmparams" value="" />
+      <setting name="params" value="" />
+      <setting name="workingDirectory" value="$PROJECT_DIR$" />
+      <setting name="searchForTest" value="Across module dependencies" />
+      <setting name="testName" value="" />
+      <setting name="testKind" value="Class" />
+      <setting name="showProgressMessages" value="true" />
+      <method />
+    </configuration>
     <list size="0" />
     <configuration name="&lt;template&gt;" type="WebApp" default="true" selected="false">
       <Host>localhost</Host>
@@ -627,7 +604,7 @@
   </component>
   <component name="ToolWindowManager">
     <frame x="-2" y="-3" width="1924" height="1052" extended-state="6" />
-    <editor active="true" />
+    <editor active="false" />
     <layout>
       <window_info id="Palette&#9;" active="false" anchor="left" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.33" sideWeight="0.5" order="2" side_tool="false" content_ui="tabs" />
       <window_info id="Changes" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.33" sideWeight="0.5" order="7" side_tool="false" content_ui="tabs" />
@@ -640,7 +617,6 @@
       <window_info id="Event Log" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.33" sideWeight="0.5" order="7" side_tool="true" content_ui="tabs" />
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-      <window_info id="Messages" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="true" weight="0.3291536" sideWeight="0.5" order="-1" side_tool="false" content_ui="tabs" />
       <window_info id="TODO" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.33" sideWeight="0.5" order="6" side_tool="false" content_ui="tabs" />
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@@ -649,11 +625,12 @@
       <window_info id="Application Servers" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.33" sideWeight="0.5" order="7" side_tool="false" content_ui="tabs" />
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+      <window_info id="Gradle" active="false" anchor="right" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.33" sideWeight="0.5" order="3" side_tool="false" content_ui="tabs" />
+      <window_info id="Hierarchy" active="false" anchor="right" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.25" sideWeight="0.5" order="2" side_tool="false" content_ui="combo" />
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       <window_info id="Message" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.33" sideWeight="0.5" order="0" side_tool="false" content_ui="tabs" />
       <window_info id="Find" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.33" sideWeight="0.5" order="1" side_tool="false" content_ui="tabs" />
-      <window_info id="Gradle" active="false" anchor="right" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.33" sideWeight="0.5" order="3" side_tool="false" content_ui="tabs" />
-      <window_info id="Hierarchy" active="false" anchor="right" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.25" sideWeight="0.5" order="2" side_tool="false" content_ui="combo" />
+      <window_info id="Messages" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="true" weight="0.3291536" sideWeight="0.5" order="8" side_tool="false" content_ui="tabs" />
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     </layout>
   </component>
@@ -681,13 +658,67 @@
     <option name="FILTER_TARGETS" value="false" />
   </component>
   <component name="editorHistoryManager">
+    <entry file="file://$PROJECT_DIR$/sparkseq-core/src/main/scala/pl/elka/pw/sparkseq/seqAnalysis/SparkSeqAnalysis.scala">
+      <provider selected="true" editor-type-id="text-editor">
+        <state vertical-scroll-proportion="0.0" vertical-offset="0" max-vertical-offset="14835">
+          <caret line="725" column="30" selection-start-line="725" selection-start-column="30" selection-end-line="725" selection-end-column="30" />
+          <folding />
+        </state>
+      </provider>
+    </entry>
+    <entry file="file://$PROJECT_DIR$/sparkseq-core/src/main/scala/pl/elka/pw/sparkseq/serialization/SparkSeqKryoRegistrator.scala">
+      <provider selected="true" editor-type-id="text-editor">
+        <state vertical-scroll-proportion="0.0" vertical-offset="480" max-vertical-offset="645">
+          <caret line="32" column="41" selection-start-line="32" selection-start-column="41" selection-end-line="32" selection-end-column="41" />
+          <folding />
+        </state>
+      </provider>
+    </entry>
+    <entry file="file://$PROJECT_DIR$/sparkseq-core/src/main/scala/pl/elka/pw/sparkseq/junctions/SparkSeqJunctionAnalysis.scala">
+      <provider selected="true" editor-type-id="text-editor">
+        <state vertical-scroll-proportion="0.0" vertical-offset="1815" max-vertical-offset="1905">
+          <caret line="121" column="0" selection-start-line="121" selection-start-column="0" selection-end-line="121" selection-end-column="0" />
+          <folding />
+        </state>
+      </provider>
+    </entry>
+    <entry file="jar://$USER_HOME$/.ivy2/cache/org.seqdoop/htsjdk/jars/htsjdk-1.118.jar!/htsjdk/samtools/SAMRecord.class">
+      <provider selected="true" editor-type-id="text-editor">
+        <state vertical-scroll-proportion="0.0" vertical-offset="90" max-vertical-offset="5100">
+          <caret line="6" column="13" selection-start-line="6" selection-start-column="13" selection-end-line="6" selection-end-column="13" />
+          <folding />
+        </state>
+      </provider>
+    </entry>
+    <entry file="file://$PROJECT_DIR$/sparkseq-core/src/main/scala/pl/elka/pw/sparkseq/SparkSeqBaseDE.scala">
+      <provider selected="true" editor-type-id="text-editor">
+        <state vertical-scroll-proportion="0.0" vertical-offset="345" max-vertical-offset="2310">
+          <caret line="23" column="7" selection-start-line="23" selection-start-column="7" selection-end-line="23" selection-end-column="7" />
+          <folding />
+        </state>
+      </provider>
+    </entry>
     <entry file="file://$PROJECT_DIR$/sparkseq-core/src/main/scala/pl/elka/pw/sparkseq/SparkSeqSimpleJob.scala">
       <provider selected="true" editor-type-id="text-editor">
         <state vertical-scroll-proportion="0.0" vertical-offset="0" max-vertical-offset="2775">
           <caret line="0" column="0" selection-start-line="0" selection-start-column="0" selection-end-line="0" selection-end-column="0" />
-          <folding>
-            <element signature="e#55#91#0" expanded="true" />
-          </folding>
+          <folding />
+        </state>
+      </provider>
+    </entry>
+    <entry file="file://$PROJECT_DIR$/sparkseq-core/src/main/scala/pl/elka/pw/sparkseq/differentialExpression/SparkSeqDiffExpr.scala">
+      <provider selected="true" editor-type-id="text-editor">
+        <state vertical-scroll-proportion="0.0" vertical-offset="0" max-vertical-offset="10770">
+          <caret line="0" column="0" selection-start-line="0" selection-start-column="0" selection-end-line="0" selection-end-column="0" />
+          <folding />
+        </state>
+      </provider>
+    </entry>
+    <entry file="file://$PROJECT_DIR$/sparkseq-core/src/main/scala/pl/elka/pw/sparkseq/SparkSeqSimpleJob.scala">
+      <provider selected="true" editor-type-id="text-editor">
+        <state vertical-scroll-proportion="0.0" vertical-offset="0" max-vertical-offset="2775">
+          <caret line="0" column="0" selection-start-line="0" selection-start-column="0" selection-end-line="0" selection-end-column="0" />
+          <folding />
         </state>
       </provider>
     </entry>
@@ -701,7 +732,7 @@
     </entry>
     <entry file="jar://$USER_HOME$/.ivy2/cache/org.seqdoop/htsjdk/jars/htsjdk-1.118.jar!/htsjdk/samtools/SAMRecord.class">
       <provider selected="true" editor-type-id="text-editor">
-        <state vertical-scroll-proportion="-3.0" vertical-offset="0" max-vertical-offset="5085">
+        <state vertical-scroll-proportion="0.0" vertical-offset="90" max-vertical-offset="5100">
           <caret line="6" column="13" selection-start-line="6" selection-start-column="13" selection-end-line="6" selection-end-column="13" />
           <folding />
         </state>
@@ -719,9 +750,7 @@
       <provider selected="true" editor-type-id="text-editor">
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           <caret line="121" column="0" selection-start-line="121" selection-start-column="0" selection-end-line="121" selection-end-column="0" />
-          <folding>
-            <element signature="e#641#677#0" expanded="true" />
-          </folding>
+          <folding />
         </state>
       </provider>
     </entry>
@@ -729,20 +758,15 @@
       <provider selected="true" editor-type-id="text-editor">
         <state vertical-scroll-proportion="0.0" vertical-offset="0" max-vertical-offset="10770">
           <caret line="0" column="0" selection-start-line="0" selection-start-column="0" selection-end-line="0" selection-end-column="0" />
-          <folding>
-            <element signature="n#!!doc" expanded="true" />
-            <element signature="e#653#737#0" expanded="true" />
-          </folding>
+          <folding />
         </state>
       </provider>
     </entry>
     <entry file="file://$PROJECT_DIR$/sparkseq-core/src/main/scala/pl/elka/pw/sparkseq/seqAnalysis/SparkSeqAnalysis.scala">
       <provider selected="true" editor-type-id="text-editor">
-        <state vertical-scroll-proportion="0.36256325" vertical-offset="10450" max-vertical-offset="14625">
+        <state vertical-scroll-proportion="0.0" vertical-offset="10440" max-vertical-offset="14400">
           <caret line="725" column="30" selection-start-line="725" selection-start-column="30" selection-end-line="725" selection-end-column="30" />
-          <folding>
-            <element signature="e#642#678#0" expanded="true" />
-          </folding>
+          <folding />
         </state>
       </provider>
     </entry>
diff --git a/sparkseq-core/build.sbt b/sparkseq-core/build.sbt
index f1bbf52..0fe669b 100644
--- a/sparkseq-core/build.sbt
+++ b/sparkseq-core/build.sbt
@@ -18,7 +18,7 @@ lazy val hadoopVersion = Properties.envOrElse("SPARK_HADOOP_VERSION", DEFAULT_HA
 ScctPlugin.instrumentSettings
 
 libraryDependencies ++= Seq(
-  "org.apache.spark" %% "spark-core" % "1.0.2",
+  "org.apache.spark" %% "spark-core" % "1.1.0",
   "org.scalatest" % "scalatest_2.10" % "2.1.0-RC2" % "test",
   "org.apache.commons" % "commons-math3" % "3.2",
   "org.apache.hadoop" % "hadoop-client" % hadoopVersion,