Lack of input file

[shaojiqi]

Excellent work and beautiful plots!

My problem: "pre_processing.R" lacks input tables like "L6_abso.txt","fmt_reads_sum" , it will be very nice of you to give any help!

[RuiqiaoHe]

Thanks for you appreciation!
The two input files for our pre-processing script are 1) absolute genus abundance matrix, and 2) the number of mapped reads in each sample.
The format for the abundance matrix is as follows:

OTU ID	Sample 1	Sample 2	...	Sample N
Taxon 1	--	--	--	--
Taxon 2	--	--	--	--
...	--	--	--	--
Taxon M	--	--	--	--

Our pre-processing script de-noised this abundance table for later analyses.
The format for the read sum file is as follows:

id	count
Sample 1	--
Sample 2	--
...	--
Sample N	--

We used this file to filter samples without enough statistical power.
You can use our script and input file as above for your own data. I hope it would be clear for you.