Dockerfile-app

FROM python:3.10-slim

COPY . /app
WORKDIR /app

RUN set -ex 

RUN apt-get update \
  && apt-get install -y \
  bedtools \
  git \
  python3-dev \
  python3-pip \
  unzip \
  wget \
  && apt-get clean

# Remove server-related configuration files
RUN rm uwsgi.ini nginx.conf

# Install dependencies
RUN pip3 install --no-cache-dir -r dependencies/requirements-app.txt

# Install mcdp2
RUN cd ../ \
  && git clone https://github.com/fmfi-compbio/mcdp2 \
  && cd mcdp2 \
  && git reset --hard fd7c69f5e97db8c1052df859cb02d86533287e64 \
  && pip3 install . \
  && cd ../app

# Write configuration file
RUN python3 config/generate_config.py --latest-version

# Download Bootstrap and Font Awesome to retain front-end styling even when offline
RUN wget https://github.com/twbs/icons/releases/download/v1.11.0/bootstrap-icons-1.11.0.zip \
  && wget https://use.fontawesome.com/releases/v6.5.2/fontawesome-free-6.5.2-web.zip \
  && unzip bootstrap-icons-1.11.0.zip \ 
  && unzip fontawesome-free-6.5.2-web.zip \
  && mv bootstrap-icons-1.11.0 assets \
  && mkdir -p assets/fontawesome-free-6.5.2-web \
  && mv -t assets/fontawesome-free-6.5.2-web fontawesome-free-6.5.2-web/svgs fontawesome-free-6.5.2-web/webfonts \
  && rm -rf bootstrap-* fontawesome-*

# Remove folders related to cron jobs and data preparation
RUN rm -rf cron_jobs prepare_data

EXPOSE 8050
CMD ["python3", "app.py"]