bioinformatics-centre
diff --git a/‎CMakeLists.txt
+24 b/‎CMakeLists.txt
+24
diff --git a/‎bayesTyper/kmc_api/kmc_file.o
-26.8 KB b/‎bayesTyper/kmc_api/kmc_file.o
-26.8 KB
diff --git a/‎bayesTyper/kmc_api/kmer_api.o
-2.18 KB b/‎bayesTyper/kmc_api/kmer_api.o
-2.18 KB
diff --git a/‎bayesTyper/kmc_api/mmer.o
-2.86 KB b/‎bayesTyper/kmc_api/mmer.o
-2.86 KB
diff --git a/‎bayesTyper/src/CMakeLists.txt
-22 b/‎bayesTyper/src/CMakeLists.txt
-22
diff --git a/‎bayesTyper/src/CountAllocation.cpp
-91 b/‎bayesTyper/src/CountAllocation.cpp
-91
@@ -0,0 +1,24 @@
+cmake_minimum_required(VERSION 2.8.0)
+
+execute_process(
+  COMMAND git rev-parse --abbrev-ref HEAD
+  WORKING_DIRECTORY ${CMAKE_SOURCE_DIR}
+  OUTPUT_VARIABLE GIT_BRANCH
+  OUTPUT_STRIP_TRAILING_WHITESPACE
+)
+
+execute_process(
+  COMMAND git rev-parse HEAD
+  WORKING_DIRECTORY ${CMAKE_SOURCE_DIR}
+  OUTPUT_VARIABLE GIT_LAST_COMMIT_HASH
+  OUTPUT_STRIP_TRAILING_WHITESPACE
+)
+
+SET(CMAKE_CXX_FLAGS "--std=c++11 -g -Wall -O3 -DBT_VERSION='\"${GIT_BRANCH} ${GIT_LAST_COMMIT_HASH}\"' -lpthread")
+
+FIND_PACKAGE(Boost COMPONENTS program_options system filesystem iostreams REQUIRED)
+message(STATUS ${Boost_LIBRARIES})
+add_subdirectory(${CMAKE_SOURCE_DIR}/src/vcf++)
+add_subdirectory(${CMAKE_SOURCE_DIR}/src/bayesTyper)
+add_subdirectory(${CMAKE_SOURCE_DIR}/src/bayesTyperTools)
+add_subdirectory(${CMAKE_SOURCE_DIR}/src/bayesTyperTools/scripts)