diff --git a/biolink-model.yaml b/biolink-model.yaml index ee3aed8bc3..56834d2adb 100644 --- a/biolink-model.yaml +++ b/biolink-model.yaml @@ -1730,6 +1730,7 @@ slots: - https://github.com/biolink/biolink-model/issues/657 has real world evidence of association with: + deprecated: true is_a: related to at instance level description: >- this means that the assertion was derived by applying statistical and machine learning models to @@ -1741,6 +1742,39 @@ slots: tag: biolink:canonical_predicate value: true + associated with likelihood of: + is_a: associated with + description: >- + A a relationship that holds between two concepts represented by variables for which a statistical + dependence is demonstrated, wherein the state or value of one variable predicts the future state + or value of the other. E.g. the statement “An Atrial Fibrillation (Afib) diagnosis is associated + with likelihood of a Myocardial Infarction (MI) diagnosis” asserts that the state of having Afib + is associated with an increased or decreased likelihood that a patient will later exhibit MI. + likelihood associated with: + is_a: associated with + description: >- + inverse: associated with likelihood of + + associated with increased likelihood of: + is_a: associated with likelihood of + description: >- + Expresses a relationship between two named things where the relationship is typically generated statistically + and the state or fact of something is more probable. + increased likelihood associated with: + is_a: likelihood associated with + description: >- + inverse: associated with increased likelihood of + + associated with decreased likelihood of: + is_a: associated with likelihood of + description: >- + Expresses a relationship between two named things where the relationship is typically generated statistically + and the state or fact of something is less probable. + decreased likelihood associated with: + is_a: likelihood associated with + description: >- + inverse: associated with decreased likelihood of + target for: is_a: related to at instance level description: >- @@ -7009,6 +7043,55 @@ slots: description: >- range: FDA_approval_status_enum + supporting study metadata: + is_a: association slot + description: >- + Information about a study used to generate information used as evidence to support the knowledge expressed in an + Association. In practice, data creators should use one of the more specific subtypes of this property. + abstract: true + + supporting study method type: + is_a: supporting study metadata + description: >- + A type of method that was applied in a study used to generate the information used as evidence (e.g. a type of + experimental assay, or statistical calculation, or computational analysis). + range: uriorcurie + + supporting study method description: + is_a: supporting study metadata + description: >- + A uri or curie pointing to information about the methodology used to generate data supporting an Association. + range: uriorcurie + + supporting study size: + is_a: supporting study metadata + description: >- + The sample size used in a study that provided evidence for the association (e.g. 'n' of a cohort for a + clinical study). + range: integer + + supporting study cohort: + is_a: supporting study metadata + description: >- + A description of a study population/cohort that was interrogated to provide evidence for the association + (e.g. the inclusion and exclusion criteria). + range: string + + supporting study date range: + is_a: supporting study metadata + description: >- + The date range over which data was collected in a study that provided evidence for an Association. + range: string + + supporting study context: + is_a: supporting study metadata + description: >- + A term or terms describing the experimental setting/context in which evidence supporting the Association was + generated ('context' may be defined by many factors, including taxon, model system (e.g. cell line type), tissue + type, disease, etc.). + range: string + + classes: ## ----------