cl-relations.obo

ontology: cl/cl-relations

[Term]
id: BFO:0000007
name: process

[Typedef]
id: adjacent_to
name: adjacent_to

[Typedef]
id: bearer_of
name: bearer of
namespace: BFO
xref: BFO:0000053

[Typedef]
id: capable_of
name: capable_of
def: "A relation between a material entity (such as a cell) and a process. This is a shortcut relation, translation rule for which is: capable_of P <-> bearer_of (some realized_by only P). Example: osteoclast capable of bone resorption." [GOC:cjm]
expand_expression_to: "http://purl.obolibrary.org/obo/BFO_0000053 some (http://purl.obolibrary.org/obo/BFO_0000054 only ?Y)" []
!property_value: IAO:0000412 http://purl.obolibrary.org/obo/ro.owl
xref: RO:0002215

[Typedef]
id: develops_from
name: develops_from
namespace: RO
xref: RO:0002202

[Typedef]
id: has_completed
name: has_completed

[Typedef]
id: has_high_plasma_membrane_amount
name: has_high_plasma_membrane_amount
namespace: RO
def: "A relation between a cell and molecule or complex such that every instance of the cell has a high number of instances of that molecule expressed on the cell surface. For the formal definition, see Masci et al *PMID:19243617)." [PMID:19243617]

[Typedef]
id: has_low_plasma_membrane_amount
name: has_low_plasma_membrane_amount
namespace: RO
def: "A relation between a cell and molecule or complex such that every instance of the cell has a low number of instances of that molecule expressed on the cell surface. For the formal definition, see Masci et al *PMID:19243617)." [PMID:19243617]

[Typedef]
id: has_modification
name: has_modification
namespace: RO

[Typedef]
id: has_not_completed
name: has_not_completed
namespace: RO

[Typedef]
id: has_plasma_membrane_part
name: has_plasma_membrane_part
namespace: RO
def: "Holds between a cell c and a protein complex or protein p if and only if that cell has as part a plasma_membrane[GO:0005886], and that plasma membrane has p as part." [PMID:19243617]
xref: RO:0002104
expand_expression_to: "http://purl.obolibrary.org/obo/BFO_0000051 some (http://purl.obolibrary.org/obo/GO_0005886 and http://purl.obolibrary.org/obo/BFO_0000051 some ?Y)" []

[Typedef]
id: has_quality
name: has_quality
namespace: RO
alt_id: OBO_REL:0000029
xref: OBO_REL:has_quality

[Typedef]
id: lacks_modification
name: lacks_modification
namespace: RO

[Typedef]
id: lacks_part
name: lacks_part
namespace: RO
expand_expression_to: "http://purl.obolibrary.org/obo/BFO_0000051 exactly 0 ?Y" []

[Typedef]
id: lacks_plasma_membrane_part
name: lacks_plasma_membrane_part
namespace: RO
expand_expression_to: "http://purl.obolibrary.org/obo/BFO_0000051 exactly 0 (http://purl.obolibrary.org/obo/GO_0005886 and http://purl.obolibrary.org/obo/BFO_0000051 some ?Y)" []

[Typedef]
id: located_in
name: located_in

[Typedef]
id: occurs_in
name: occurs in
namespace: gene_ontology
xref: BFO:0000066
property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl
transitive_over: part_of ! part_of

[Typedef]
id: part_of
name: part of
namespace: bfo
xref: BFO:0000050
!property_value: IAO:0000412 http://purl.obolibrary.org/obo/bfo.owl
is_transitive: true

[Typedef]
id: has_part
name: has_part
namespace: bfo
xref: BFO:0000051
!property_value: IAO:0000412 http://purl.obolibrary.org/obo/bfo.owl
inverse_of: part_of
is_transitive: true

[Typedef]
id: participates_in
name: participates in
xref: BFO:0000056
property_value: IAO:0000412 http://purl.obolibrary.org/obo/bfo.owl

[Typedef]
id: positively_regulates
name: positively_regulates
namespace: gene_ontology
xref: RO:0002213
property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl
is_a: regulates ! regulates

[Typedef]
id: produces
name: produces
namespace: RO
xref: RO:0003000
property_value: IAO:0000412 http://purl.obolibrary.org/obo/ro.owl

[Typedef]
id: realized_by
name: realized by
xref: BFO:0000054
property_value: IAO:0000412 http://purl.obolibrary.org/obo/bfo.owl

[Typedef]
id: secretes
name: secretes

[Typedef]
id: spatially_disjoint_from
name: spatially_disjoint_from
def: "A is spatially_disjoint_from B if they have no parts in common." [SO:cjm]
synonym: "non_overlapping_with" EXACT []
synonym: "shares_no_parts_with" EXACT []
expand_assertion_to: "Class: <http://www.w3.org/2002/07/owl#Nothing> EquivalentTo: (BFO_0000050 some ?X) and (BFO_0000050 some ?Y)" []
is_metadata_tag: true
is_class_level: true