Add PURLs

biopragmatics · Sep 19, 2023 · 46a354b · 46a354b
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diff --git a/README.md b/README.md
@@ -69,7 +69,8 @@ interact with the mappings files, e.g., to add predictions.
 
 The mappings are distributed in the [Simple Standard for Sharing Ontology Mappings
 (SSSOM)](https://github.com/mapping-commons/sssom) format
-([here](https://github.com/biopragmatics/biomappings/blob/master/docs/_data/sssom)).
+([here](https://github.com/biopragmatics/biomappings/blob/master/docs/_data/sssom))
+and can be referenced by PURL such as https://w3id.org/biopragmatics/biomappings/sssom/biomappings.sssom.tsv.
 The positive mappings are also available as a network through
 [NDEx](https://www.ndexbio.org/#/network/402d1fd6-49d6-11eb-9e72-0ac135e8bacf).
 

diff --git a/docs/_data/sssom/README.md b/docs/_data/sssom/README.md
@@ -1,17 +1,18 @@
 # Biomappings SSSOM Export
 
 The data is distributed under the [Simple Standard for Sharing Ontology Mappings
-(SSSOM)](https://github.com/mapping-commons/sssom) format.
+(SSSOM)](https://github.com/mapping-commons/sssom) format. Each file is assigned a PURL in the `https://w3id.org/biopragmatics/biomappings/sssom/`
+namespace.
 
 > **Warning**
 > The SSSOM export contains a combination of the manually curated positive mappings and predicted mappings.
 > Please use the mapping justification and confidence accordingly. Note that prediction confidences are
 > generated by each prediction script according to its own rules - some give a global confidence and some
 > give a prediction-specific confidence.
 
-| Facet        | Description                                                | Link                                                                                                                                   |
-|--------------|------------------------------------------------------------|----------------------------------------------------------------------------------------------------------------------------------------|
-| TSV          | Mappings (predicted and curated)                           | [`docs/_data/biomappings.sssom.tsv`](https://github.com/biopragmatics/biomappings/raw/master/docs/_data/sssom/biomappings.sssom.tsv)   |
-| Metadata YML | CURIE Map, credits, etc. that go along with the TSV export | [`docs/_data/biomappings.sssom.yml`](https://github.com/biopragmatics/biomappings/raw/master/docs/_data/sssom/biomappings.sssom.yml)   |
-| JSON         | Mappings in JSON                                           | [`docs/_data/biomappings.sssom.json`](https://github.com/biopragmatics/biomappings/raw/master/docs/_data/sssom/biomappings.sssom.json) |
-| OWL          | Mappings in ontology format                                | [`docs/_data/biomappings.sssom.owl`](https://github.com/biopragmatics/biomappings/raw/master/docs/_data/sssom/biomappings.sssom.owl)   |
+| Facet        | Description                                | PURL                                                                    | Link                                                                                                                                   |
+|--------------|--------------------------------------------|-------------------------------------------------------------------------|----------------------------------------------------------------------------------------------------------------------------------------|
+| TSV          | Mappings (predicted and curated)           | https://w3id.org/biopragmatics/biomappings/sssom/biomappings.sssom.tsv  | [`docs/_data/biomappings.sssom.tsv`](https://github.com/biopragmatics/biomappings/raw/master/docs/_data/sssom/biomappings.sssom.tsv)   |
+| Metadata YML | Metadata that go along with the TSV export | https://w3id.org/biopragmatics/biomappings/sssom/biomappings.sssom.yml  | [`docs/_data/biomappings.sssom.yml`](https://github.com/biopragmatics/biomappings/raw/master/docs/_data/sssom/biomappings.sssom.yml)   |
+| JSON         | Mappings in JSON                           | https://w3id.org/biopragmatics/biomappings/sssom/biomappings.sssom.json | [`docs/_data/biomappings.sssom.json`](https://github.com/biopragmatics/biomappings/raw/master/docs/_data/sssom/biomappings.sssom.json) |
+| OWL          | Mappings in ontology format                | https://w3id.org/biopragmatics/biomappings/sssom/biomappings.sssom.owl  | [`docs/_data/biomappings.sssom.owl`](https://github.com/biopragmatics/biomappings/raw/master/docs/_data/sssom/biomappings.sssom.owl)   |