Skip to content

Commit

Permalink
Additional curations
Browse files Browse the repository at this point in the history
  • Loading branch information
@cthoyt
cthoyt committed Sep 23, 2023
1 parent 4a3166e commit d322dab
Show file tree
Hide file tree
Showing 3 changed files with 11 additions and 11 deletions.
2 changes: 2 additions & 0 deletions src/biomappings/resources/incorrect.tsv
View file
Original file line number Diff line number Diff line change
Expand Up @@ -1434,7 +1434,9 @@ vo 0010927 ORF skos:exactMatch mesh D004474 Ecthyma, Contagious semapv:ManualMap
vo 0010944 Eae skos:exactMatch mesh D004681 Encephalomyelitis, Autoimmune, Experimental semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/4b2628/scripts/generate_vo_mesh_mappings.py 0.5400948258091115
vo 0010971 SurA skos:exactMatch uberon UBERON:0003823 hindlimb zeugopod semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching mira 0.5209235209235209
vo 0010988 IroN skos:exactMatch chebi CHEBI:18248 iron atom semapv:ManualMappingCuration orcid:0000-0003-4423-4370
vo 0010988 IroN skos:exactMatch mesh D007501 Iron semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/28ac41/scripts/generate_vo_mesh_mappings.py 0.74
vo 0010997 IroN skos:exactMatch chebi CHEBI:18248 iron atom semapv:ManualMappingCuration orcid:0000-0003-4423-4370
vo 0010997 IroN skos:exactMatch mesh D007501 Iron semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/28ac41/scripts/generate_vo_mesh_mappings.py 0.74
vo 0011021 CP skos:exactMatch chebi CHEBI:3380 captopril semapv:ManualMappingCuration orcid:0000-0003-4423-4370
vo 0011021 CP skos:exactMatch hp HP:0100021 Cerebral palsy semapv:ManualMappingCuration orcid:0000-0003-4423-4370
vo 0011021 CP skos:exactMatch mesh D002547 Cerebral Palsy semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/4b2628/scripts/generate_vo_mesh_mappings.py 0.5555555555555556
Expand Down
9 changes: 9 additions & 0 deletions src/biomappings/resources/mappings.tsv
View file
Original file line number Diff line number Diff line change
Expand Up @@ -9834,6 +9834,13 @@ vo 0005409 mRNA-1073 skos:exactMatch mesh C000722748 mRNA-1073 COVID-19 and infl
vo 0005410 SYS6006 skos:exactMatch mesh C000722716 SYS6006 COVID-19 vaccine semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/4b2628/scripts/generate_vo_mesh_mappings.py 0.5555555555555556
vo 0005414 LVRNA009 skos:exactMatch mesh C000722715 LVRNA009 COVID-19 vaccine semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/4b2628/scripts/generate_vo_mesh_mappings.py 0.5555555555555556
vo 0005415 mRNA-1273.214 skos:exactMatch mesh C000722752 mRNA-1273.214 COVID-19 vaccine semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/4b2628/scripts/generate_vo_mesh_mappings.py 0.5555555555555556
vo 0005445 immune globulin, intravenous skos:exactMatch mesh D016756 Immunoglobulins, Intravenous semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/28ac41/scripts/generate_vo_mesh_mappings.py 0.5
vo 0006001 botulinum antitoxin skos:exactMatch mesh D001904 Botulinum Antitoxin semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/28ac41/scripts/generate_vo_mesh_mappings.py 0.76
vo 0006005 diphtheria antitoxin skos:exactMatch mesh D004166 Diphtheria Antitoxin semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/28ac41/scripts/generate_vo_mesh_mappings.py 0.76
vo 0007193 Abagovomab skos:exactMatch mesh C518318 abagovomab semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/28ac41/scripts/generate_vo_mesh_mappings.py 0.76
vo 0007240 ALVAC Vaccine skos:exactMatch mesh C078788 ALVAC vaccine semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/28ac41/scripts/generate_vo_mesh_mappings.py 0.77
vo 0007244 ALVAC-CEA Vaccine skos:exactMatch mesh C404395 ALVAC-CEA vaccine semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/28ac41/scripts/generate_vo_mesh_mappings.py 0.77
vo 0007420 MUC-2-KLH Vaccine skos:exactMatch mesh C502357 MUC-2-KLH vaccine semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/28ac41/scripts/generate_vo_mesh_mappings.py 0.77
vo 0010632 country skos:exactMatch commoncoreontology Country country semapv:ManualMappingCuration orcid:0000-0003-4423-4370
vo 0010637 Rubella virus vaccine skos:exactMatch mesh D012411 Rubella Vaccine semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:StructuralMatching vo 0.99
vo 0010710 Dukoral skos:exactMatch mesh C586175 Dukoral semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/4b2628/scripts/generate_vo_mesh_mappings.py 0.7777777777777778
Expand All @@ -9844,6 +9851,8 @@ vo 0010737 Recombivax HB skos:exactMatch mesh C075655 Recombivax HB semapv:Manua
vo 0010754 virus protein skos:exactMatch pr PR:000036197 viral protein semapv:ManualMappingCuration orcid:0000-0003-4423-4370
vo 0010950 SecA2 skos:exactMatch ogg 3000885594 secA2 semapv:ManualMappingCuration orcid:0000-0003-4423-4370
vo 0011093 Hepatitis B surface antigen skos:exactMatch mesh D006514 Hepatitis B Surface Antigens semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/4b2628/scripts/generate_vo_mesh_mappings.py 0.549371263656978
vo 0011155 Beta-tubulin skos:broadMatch mesh D014404 Tubulin semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/28ac41/scripts/generate_vo_mesh_mappings.py 0.54
vo 0011231 Glycoprotein skos:exactMatch mesh D006023 Glycoproteins semapv:ManualMappingCuration orcid:0000-0003-4423-4370 semapv:LexicalMatching https://github.com/biomappings/biomappings/blob/28ac41/scripts/generate_vo_mesh_mappings.py 0.56
vo 0011241 Hsp90 skos:exactMatch pr PR:000025350 HSPC protein semapv:ManualMappingCuration orcid:0000-0003-4423-4370
wikipathways WP100 Glutathione metabolism debio:0000003 go GO:0006749 glutathione metabolic process semapv:ManualMappingCuration orcid:0000-0003-4423-4370
wikipathways WP100 Glutathione metabolism skos:exactMatch reactome R-HSA-174403 Glutathione synthesis and recycling semapv:ManualMappingCuration orcid:0000-0002-2046-6145
Expand Down
11 changes: 0 additions & 11 deletions src/biomappings/resources/predictions.tsv
View file
Original file line number Diff line number Diff line change
Expand Up @@ -38917,28 +38917,17 @@ vo 0005277 mRNA-1273.211 skos:exactMatch mesh D000090983 2019-nCoV Vaccine mRNA-
vo 0005315 SCB-2020S skos:exactMatch mesh C000721887 SCB-2019 COVID-19 vaccine semapv:LexicalMatching 0.56 https://github.com/biomappings/biomappings/blob/28ac41/scripts/generate_vo_mesh_mappings.py
vo 0005340 VB10.2129 skos:exactMatch mesh C000720500 VB10.COV-2 vaccine semapv:LexicalMatching 0.56 https://github.com/biomappings/biomappings/blob/28ac41/scripts/generate_vo_mesh_mappings.py
vo 0005341 VB10.2210 skos:exactMatch mesh C000720500 VB10.COV-2 vaccine semapv:LexicalMatching 0.56 https://github.com/biomappings/biomappings/blob/28ac41/scripts/generate_vo_mesh_mappings.py
vo 0005445 immune globulin, intravenous skos:exactMatch mesh D016756 Immunoglobulins, Intravenous semapv:LexicalMatching 0.5 https://github.com/biomappings/biomappings/blob/28ac41/scripts/generate_vo_mesh_mappings.py
vo 0006001 botulinum antitoxin skos:exactMatch mesh D001904 Botulinum Antitoxin semapv:LexicalMatching 0.76 https://github.com/biomappings/biomappings/blob/28ac41/scripts/generate_vo_mesh_mappings.py
vo 0006005 diphtheria antitoxin skos:exactMatch mesh D004166 Diphtheria Antitoxin semapv:LexicalMatching 0.76 https://github.com/biomappings/biomappings/blob/28ac41/scripts/generate_vo_mesh_mappings.py
vo 0006033 meningococcal C conjugate vaccine skos:exactMatch mesh C410218 serogroup C meningococcal conjugate vaccine semapv:LexicalMatching 0.56 https://github.com/biomappings/biomappings/blob/28ac41/scripts/generate_vo_mesh_mappings.py
vo 0007054 VCL-CB01 Vaccine skos:exactMatch mesh C547023 VCL-CB01 vaccine semapv:LexicalMatching 0.77 https://github.com/biomappings/biomappings/blob/28ac41/scripts/generate_vo_mesh_mappings.py
vo 0007193 Abagovomab skos:exactMatch mesh C518318 abagovomab semapv:LexicalMatching 0.76 https://github.com/biomappings/biomappings/blob/28ac41/scripts/generate_vo_mesh_mappings.py
vo 0007240 ALVAC Vaccine skos:exactMatch mesh C078788 ALVAC vaccine semapv:LexicalMatching 0.77 https://github.com/biomappings/biomappings/blob/28ac41/scripts/generate_vo_mesh_mappings.py
vo 0007244 ALVAC-CEA Vaccine skos:exactMatch mesh C404395 ALVAC-CEA vaccine semapv:LexicalMatching 0.77 https://github.com/biomappings/biomappings/blob/28ac41/scripts/generate_vo_mesh_mappings.py
vo 0007420 MUC-2-KLH Vaccine skos:exactMatch mesh C502357 MUC-2-KLH vaccine semapv:LexicalMatching 0.77 https://github.com/biomappings/biomappings/blob/28ac41/scripts/generate_vo_mesh_mappings.py
vo 0010719 Infanrix-hexa skos:exactMatch mesh C541235 diphtheria-tetanus-acellular pertussis-inactivated poliovirus-Haemophilus influenzae b conjugate-hepatitis B vaccine semapv:LexicalMatching 0.54 https://github.com/biomappings/biomappings/blob/28ac41/scripts/generate_vo_mesh_mappings.py
vo 0010730 Pediacel skos:exactMatch mesh C541234 diphtheria-tetanus-five component acellular pertussis-inactivated poliomyelitis -Haemophilus influenzae type b conjugate vaccine semapv:LexicalMatching 0.54 https://github.com/biomappings/biomappings/blob/28ac41/scripts/generate_vo_mesh_mappings.py
vo 0010734 Priorix skos:exactMatch mesh D022542 Measles-Mumps-Rubella Vaccine semapv:LexicalMatching 0.56 https://github.com/biomappings/biomappings/blob/28ac41/scripts/generate_vo_mesh_mappings.py
vo 0010738 Rotarix skos:exactMatch mesh C492457 RIX4414 vaccine semapv:LexicalMatching 0.56 https://github.com/biomappings/biomappings/blob/28ac41/scripts/generate_vo_mesh_mappings.py
vo 0010745 Vaqta skos:exactMatch mesh D022362 Hepatitis A Vaccines semapv:LexicalMatching 0.56 https://github.com/biomappings/biomappings/blob/28ac41/scripts/generate_vo_mesh_mappings.py
vo 0010988 IroN skos:exactMatch mesh D007501 Iron semapv:LexicalMatching 0.74 https://github.com/biomappings/biomappings/blob/28ac41/scripts/generate_vo_mesh_mappings.py
vo 0010997 IroN skos:exactMatch mesh D007501 Iron semapv:LexicalMatching 0.74 https://github.com/biomappings/biomappings/blob/28ac41/scripts/generate_vo_mesh_mappings.py
vo 0011147 NS1 skos:exactMatch mesh C058271 4-(2-(4-isopropylbenzamido)ethoxy)benzoic acid semapv:LexicalMatching 0.56 https://github.com/biomappings/biomappings/blob/28ac41/scripts/generate_vo_mesh_mappings.py
vo 0011148 NS3 skos:exactMatch mesh C031926 montirelin semapv:LexicalMatching 0.56 https://github.com/biomappings/biomappings/blob/28ac41/scripts/generate_vo_mesh_mappings.py
vo 0011149 NS5 skos:exactMatch mesh C031785 8-dehydroxythienamycin semapv:LexicalMatching 0.56 https://github.com/biomappings/biomappings/blob/28ac41/scripts/generate_vo_mesh_mappings.py
vo 0011154 F1-ATPase skos:exactMatch mesh D006180 Proton-Translocating ATPases semapv:LexicalMatching 0.56 https://github.com/biomappings/biomappings/blob/28ac41/scripts/generate_vo_mesh_mappings.py
vo 0011155 Beta-tubulin skos:exactMatch mesh D014404 Tubulin semapv:LexicalMatching 0.54 https://github.com/biomappings/biomappings/blob/28ac41/scripts/generate_vo_mesh_mappings.py
vo 0011231 Glycoprotein skos:exactMatch mesh D006023 Glycoproteins semapv:LexicalMatching 0.56 https://github.com/biomappings/biomappings/blob/28ac41/scripts/generate_vo_mesh_mappings.py
vo 0011312 NS1 skos:exactMatch mesh C058271 4-(2-(4-isopropylbenzamido)ethoxy)benzoic acid semapv:LexicalMatching 0.56 https://github.com/biomappings/biomappings/blob/28ac41/scripts/generate_vo_mesh_mappings.py
vo 0011339 Catalase skos:exactMatch mesh D002374 Catalase semapv:LexicalMatching 0.78 https://github.com/biomappings/biomappings/blob/28ac41/scripts/generate_vo_mesh_mappings.py
vo 0011559 Cervarix skos:exactMatch mesh C510352 human papillomavirus vaccine, L1 type 16, 18 semapv:LexicalMatching 0.56 https://github.com/biomappings/biomappings/blob/28ac41/scripts/generate_vo_mesh_mappings.py
Expand Down

0 comments on commit d322dab

Please sign in to comment.