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/home/paul/.local/lib/python3.10/site-packages/Bio/Seq.py:1754: BiopythonDeprecationWarning: myseq.tomutable() is deprecated; please use MutableSeq(myseq) instead.
warnings.warn(
Traceback (most recent call last):
File "/home/paul/Desktop/testfile.py", line 5, in <module>
hello_world = hello.mutate([Mutation(6, 1, 'world')])
File "/home/paul/.local/lib/python3.10/site-packages/co/component.py", line 237, in mutate
affected_features = features.overlap(mutation.position, mutation.end)
File "/home/paul/.local/lib/python3.10/site-packages/co/feature.py", line 288, in overlap
intersect = set(super(ComponentFeatureSet, self).overlap(start, end))
File "/home/paul/.local/lib/python3.10/site-packages/co/feature.py", line 115, in overlap
for f in sorted(self._features.search(start, end + 1)):
AttributeError: 'IntervalTree' object has no attribute 'search'
The text was updated successfully, but these errors were encountered:
pmaen
added a commit
to pmaen/co
that referenced
this issue
Aug 25, 2022
The first example from https://github.com/biosustain/co/blob/c2be2cf358bccb7ee775b52feeab78f948a61f27/docs/quickstart.rst
results in the following output/error:
The text was updated successfully, but these errors were encountered: