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The fetch-ncbi-taxonomy action downloads the taxdump data from the NCBI Taxonomy FTP server so it can be used by the build-sutom-diamond-db action to create a Diamond database.
This taxdump data is the same that is used in the Diamond tutorial, however the NCBI Taxonomy FTP server also has what they called new_taxdump, what we believe is an updated version of the "old" taxdump data.
We would like to explore replacing the old taxdump data with the new, taking care that it is compatible with the downstream Diamond database creation.
fetch-ncbi-taxonomy
action downloads the taxdump data from the NCBI Taxonomy FTP server so it can be used by thebuild-sutom-diamond-db
action to create a Diamond database.new_taxdump
, what we believe is an updated version of the "old" taxdump data.Relevant documentation: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7408187/
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