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rep_info.tab
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seq_id Gene/ORF Species Plasmid GenBank no. Position Size Rep-family Protein Domain I Domain II
CDS1[pCW7][STAREPNA] CDS1 Staphylococci pCW7 J03323 199–1143 945 7 Topoisomerase rep_trans
CDS1[pEFC1][D85392] CDS1 E. faecalis pEFC1 D85392 1963–2685 723 6 Topoisomerase I rep_3 COG5527
CDS1[pIM13][IM13CG] CDS1 B. subtilis pIM13 M13761 389–829 441 10 Firmicute protein repL HTH_CRP
CDS1[pKC5b][AF378372] CDS1 Lactobacillus spp pKC5b AF378372 826–1770 945 7 Topoisomerase rep_trans
CDS1[plasmid][AY278324] CDS1 B. thuringiensis Plasmid AY278324 1032–2537 1506 12 Primase PriCT-1
CDS1[pRE25][X92945] CDS1 E. faecalis pRE25 X92945 33–1526 1494 2 Primase PriCT-1
CDS1[pUSA01][NC007790] CDS1 S. aureus pUSA01 NC_007790 1–996 996 Unique Rep Rep_1 COG5655
CDS1[pTZ12][SYNPTZ12] CDS1 B. subtilis pTZ12 SYNPTZ12 119–1063 945 7 Topoisomerase rep_trans
CDS1*[pUB112][PB2REPZZ] CDS1⁎ Staphylococci pUB112 PB2REPZZ 189–1130 942 7 Topoisomerase rep_trans
CDS16[pTEF3][AE016832] CDS16 E. faecalis V583 pTEF3 AE016832 16433–17938 1506 Unique Primase PriCT-1
CDS2[pCC221][SAPC221] CDS2 S. aureus pC221 NC_002129 1202–2137 936 7 Topoisomerase rep_trans
CDS2[pCRL291.1][NC_002799] CDS2 Lactobacillus spp. pCRL291.1 NC_002799 1335–2162 828 4 Topoisomerase I rep_3 COG5527
CDS2[pEFNP1][AB038522] CDS2 E. faecium N15 pEFNP1 AB038522 439–1206 768 14 Topoisomerase rep_trans
CDS2[pPV141][SCU82607] CDS2 S. chromogenes pPV141 U82607 1583–2059 477 10 Firmicute protein repL HTH_CRP
CDS2[pSAS][BX571858] CDS2 S. aureus pSAS BX571858 876–2144 1269 5 Topoisomerase I rep_3 COG5527
CDS20[pETB][NC003265] CDS20 S. aureus pETB NC_003265 12002–13576 1575 Unique Primase PriCT-1
CDS20[pSJH901][CP000704] CDS20 S. aureus pSJH901 CP_000704 20361–19378 948 19 RepA repA_N
CDS21[pSJH901][CP000704] CDS21 S. aureus pSJH901 CP_000704 20787–21530 744 16 Rep
CDS25[pSSP1][AP008935] CDS25 S. saprophyticus pSSP1 AP008935 22985–24250 1266 Unique RepA repA_N
CDS29[pRUM][AF507977] CDS29 E. faecium pRUM AF507977 21582–20542 1041 17 RepA repA_N
CDS3[pUSA02][NC007791] CDS3 S. aureus pUSA02 NC_007791 3369–4313 945 7 Topoisomerase rep_trans
CDS3[pUSA300][CP000257] CDS3 S. aureus pUSA300 CP000257 3369–4313 945 7 Topoisomerase rep_trans
cds3[pKC5b][AF378372] CDS3 Lactobacillus spp pKC5b AF378372 3056–2247 810 4 topoisomerase I rep_3 COG5527
CDS32[pBMB67][DQ363750] CDS32 B. thuringiensis pBMB67 DQ363750 21225–22757 1533 12 Primase PriCT-1
CDS38[pOX2][NC_002146] CDS38 B. anthasis pX02 NC_002146 34115–32577 1539 3 Primase PriCT-1
CDS39[pSSP1][AP008935] CDS39 S. saprophyticus pSSP1 AP008935 34774–33944 831 13 Rep Rep_1 COG5655
CDS4[pS194][NC005564] CDS4 S. aureus pS194 NC_005564 3371–4315 945 7 Topoisomerase rep_trans
CDS45[pLEW6932][NC009130] CDS45 Staphylococcus spp pLEW6932 NC_009130 40170–41141 972 19 RepA repA_N
CDS5[pCIZ2][NC008259] CDS5⁎ E. faecium pCIZ2 NC_008259 5770–6427 666 Unique Rep
CDS6[pRE25][X92945] CDS6 E. faecalis pRE25 X92945 4666–6156 1491 1 Primase PriCT-1
CDS6[pSJH101][CP000737] CDS6 S. aureus pSJH101 CP_000737 4569–5552 984 16 Rep
CDS8[pSAS][BX571858] CDS8 S. aureus pSAS BX571858 5421–4678 744 16 Rep
EP002*[pAM373][NC_002630] EP002⁎ E. faecalis pAM373 NC_002630 2741–1725 1017 8 RepA repA_N
ORF[E.faecium_Contig_1183][JDOE] ORF E. faecium Contig 1183 www.jgi.doe.gov 980–2473 1494 2 Primase PriCT-1
ORF[E.faecium_Contig_1264][JDOE] ORF E. faecium Contig 1264 www.jgi.doe.gov 5520–6560 1041 17 RepA repA_N
ORF[E.faecium_Contig_1258][JDOE] ORF E. faecium Contig 1258 www.jgi.doe.gov 11656–10157 1500 Unique Primase PriCT-1
ORF[pC194][SAC194] ORF S. aureus pC194 NC_002013 791–114 678 13 Rep Rep_1 COG5655
ORF[pKH1][SAU38656] ORF S. aureus pKH1 SAU38656 3769–4338 570 7 Topoisomerase rep_trans
ORF[pKH6][SAU38428] ORF S. aureus pKH6 SAU38428 3654–159 945 7 Topoisomerase rep_trans
ORF[pKQ10][EFU01917] ORF E. faecium pKQ10 EFU01917 329–730 402 14 Topoisomerase rep_trans
ORF[pMBB1][EFU26268] ORF E. faecium pMBB1 EFU26268 1015–1869 855 4 topoisomerase I rep_3 COG5527
ORF[pNE131][NC_001390] ORF S. epidermidis pNE131 NC_001390 1959–89 479 10 Firmicute protein repL HTH_CRP
ORF[pNS1][PNS1CG] ORF Staphylococci pNS1 PNS1CG 3078–140 942 7 Topoisomerase rep_trans
ORF[pRI1][unpublished] ORF E. faecium pRI1 EU327398 2336–3286 951 14 Topoisomerase rep_trans
ORF[pSN2][NC_001392] ORF S. aureus pSN2 NC_001392 588–1064 477 10 Firmicute protein repL HTH_CRP
ORF[pT181][NC_001393] ORF S. aureus pT181 NC_001393 4289–791 942 7 Topoisomerase rep_trans
ORF[E.faecium_287][NZ_AAAK010000287] ORF E. faecium 287 NZ AAAK01000287 9489–8449 1041 Unique RepA repA_N
ORF1[pOg32][LOPPOG32] ORF1 Leuconostoc oenos pOg32 X86402 197–1156 960 Unique Topoisomerase rep_trans
ori43[plasmid][BACORI43] ori43 B. thuringiensis Plasmid M60513 829–2361 1533 12 Primase PriCT-1
p103[pSE12228-01][AEO15930] p103 S. epidermidis pSE12228-01 AE015930 3369–4313 945 7 Topoisomerase rep_trans
prgW[pCF10][L14285] prgW E. faecalis pCF10 AY855841 67–1068 1002 9 RepA repA_N
rep[pBT9727][CP000047] rep B. thuringiensis pBT9727 CP000047 44951–43395 1557 3 Primase PriCT-1
rep[pEFR][AF151037] rep E. faecium pEFR AF511037 102–2310 975 11 Topoisomerase I rep_3 COG5527
rep[pFL1][NC_002132] rep Flavobacterium spp pFL1 NC_002132 175–687 513 Unique Rep
rep[pHTbeta][AB183714] rep E. faecium pHTbeta AB183714 49773–51374 1602 Unique Primase PriCT-1
rep[pKH7][NC002096] rep S. aureus pKH7 NC_002096 87–1019 933 7 Topoisomerase rep_trans
rep[pMW2][NC005011] rep S. aureus pMW2 NC_005011 17577–18437 861 5 Topoisomerase I rep_3 COG5527
rep[pN315][AP003139] rep S. aureus pN315 AP003139 232–1215 984 5 Topoisomerase I rep_3 COG5527
rep[pS86][AJ223161] rep E. faecalis pS86 AJ223161 500–1222 723 6 Topoisomerase I rep_3 COG5527
rep[pSA1379][NC007931] rep S. aureus pSA1379 NC_007931 1–984 984 19 RepA repA_N
rep[pSK1][AF203376] rep S. aureus pSK1 AF203376 1307–2227 921 Unique RepA repA_N
rep[pSK3][NC001994] rep S. aureus pSK3 NC_001994 876–1340 465 10b Firmicute protein repL HTH_CRP
rep[pSK41][AF051971] rep S. aureus pSK41 AF051917 13205–14164 960 15 RepA repA_N
rep[pT48][STAPT48GC] rep S. aureus pT48 M19652 540–64 477 10 Firmicute protein repL HTH_CRP
rep[pUB110][AF181950] rep S. aureus pUB110 AF181950 6560–7354 795 Unique Rep Rep_1 COG5655
rep[pWBG1773][EF537646] rep S. aureus pWBG1773 EF537646 736–1659 924 13 Rep Rep_1
rep[pSK6][SAU96610] rep S. aureus pSK6 U96610 770–1234 465 10b Firmicute protein repL HTH_CRP
rep[pSK89][STARREPQAC] rep⁎ S. aureus pSK89 M37889 1149–226 924 13 Rep Rep_1 COG5655
rep*[pMW2][NC005011] rep⁎ S. aureus pMW2 NC_005011 228–503 276 Unique Topoisomerase I rep_3 COG5527
rep165[pBMB165][DQ242517] rep165 B. thuringiensis pBMB165 DQ242517 14865–16421 1557 3 Primase PriCT-1
rep63A[pAW63][BTH011655] rep63A Bacillus thuringiensis pAW63 BTH011655 3661–2120 1542 3 Primase PriCT-1
repA[p200B][AB158402] repA E. faecium p200B AB158402 7568–8500 933 18 Topoisomerase I rep_3 COG5527
repA[p703/5][AF109375] repA E. faecalis P703/5 AF109375 705–1427 723 6 Topoisomerase I rep_3 COG5527
repA[pAD1][L01794] repA E. faecalis pAD1 L01794 1165–155 1011 9 RepA repA_N
repA[pB82][AB178875] repA E. faecium pB82 AB178871 4157–5101 945 11 Topoisomerase I rep_3 COG5527
repA[pBI143][BFU30316] repA Bacteroides fragilis pBI143 BFU30316 1468–2148 681 Unique Rep
repA[pCI2000][AF178424] repA L. lactis pCI2000 AF178424 6249–7524 1176 Unique RepA repA_N
repA[pEF1071][AF164559] repA E. faecalis BFE1071 pEF1071 AF164559 7837–8820 984 11 Topoisomerase I rep_3 COG5527
repA[pEF418][AF408195] repA E. faecalis pEF418 AF408195 198–761 564 18 Topoisomerase I rep_3 COG5527
repA[pEJ97-1][AJ49170] repA E. faecalis pEJ97-1 AJ49170 6874–7857 984 8 RepA repA_N
repA[pLW043][AE017171] repA S. aureus pLW043 AE017171 6349–7524 1176 15 RepA repA_N
repA[pPD1][ENEPPD1A] repA E. faecalis pPD1 D78016 989–1990 1002 9 RepA repA_N
repA[pUB101][NC005127] repA S. aureus pUB101 NC_005127 4519–3335 1185 19 RepA repA_N
repA[pUSA03][NC007792] repA S. aureus pUSA03 NC_007792 101–1060 960 15 RepA repA_N
repA[VRSAp][AP003367] repA S. aureus VRSAp AP003367 315–1250 936 Unique RepA repA_N
repA*[plasmid][AY063485] repA⁎ E. faecalis Plasmid AY063485 864–1 864 11 Topoisomerase I rep_3 COG5527
repA1[pTEF1][AE016833] repA1 E. faecalis V583 pTEF1 AE016833 101–1111 1011 9 RepA repA_N
repA2[pTEF2][AE016831] repA2 E. faecalis V583 pTEF2 AE016831 100–1110 1011 9 RepA repA_N
repC[Cassette][AB037671] repC S. aureus Cassette AB037671 30750–29806 945 7 Topoisomerase rep_trans
repC[pSTE2][AJ888003] repC S. aureus pSTE2 AJ888003 2599–1655 942 7 Topoisomerase rep_trans
repD[pK214][LLLPK214] repD Lactocuccus lactis pK214 NC_009751 19856–18916 941 7 Topoisomerase rep_trans
repD[plasmid][AY939911] repD E. casseliflavus plasmid AY939911 7143–7982 840 7 Topoisomerase rep_trans
repE[orf17][pIP816][unpublished] repE E. faecium BM4147 pIP816 NC_011140 ORF17 1490 1 Primase PriCT-1
repE[pAMalpha1][AF503772] repE E. faecalis pAMalpha1 AF503772 5190–4468 723 6 Topoisomerase I rep_3 COG5527
repE[pAMbeta1][AF007787] repE Enterococcus faecalis pAMβ1 AF007787 3114–4604 1491 1 Primase PriCT-1
repE[pTEF1][AE016833] repE E. faecalis V583 pTEF1 AE016833 51882–51710 1173 1 Primase PriCT-1
repE*[pEF47][AY842500] repE E. faecalis pEF47 AY842500 1–617 617 6 Topoisomerase I rep_3 COG5527
repE*[pLCR255][AY842501] repE S. gallolyticus pLCR255 AY842501 1–617 617 6 Topoisomerase I rep_3 COG5527
repE*[pIP680][AF1172258] repE′ Staphylocuccus aureus pIP680 AF117258 1–456 456 1 Rrf2
repL[pE5][PE5PE5A] repL B. subtilis pE5 M17990 389–865 477 10 Firmicute protein repL HTH_CRP
repM200[pBM200][DQ437521] repM200 B. megaterium pBM200 DQ437521 3725–4423 699 Unique RCR protein
repR[pEF1][DQ198088] repR E. faecium pEF1 DQ198088 16296–17789 1494 2 Primase PriCT-1
repR[pGB354][U83488] repR S. agactiae pGB354 U83488 5–1495 1491 1 Primase PriCT-1
repR[pIP501][X17655] repR E. faecalis pIP501 X17655 621–2111 1491 1 Primase PriCT-1
repR[pVEF1][NC008768] repR E. faecium pVEF1 NC_008768 23488–24981 1494 2 Primase PriCT-1
repR[pVEF2][NC008821] repR E. faecium pVEF2 NC_008821 23576–25069 1494 2 Primase PriCT-1
rep[orf30][pIP816][unpublished] repR⁎ E. faecium BM4147 pIP816 NC_011140 ORF30 1426 2 Primase PriCT-1
repS[pBT233][X64695] repS Streptococcus pyogenes pBT233 X64695 503–1993 1491 1 Primase PriCT-1
repS[pMD101][X66468] repS S. pyogenes pMD101 X66468 638–2128 1491 1 Primase PriCT-1
repS[pSM19035][AY357120] repS S. sanguis pSM19035 AY357120 16813–15323 1491 1 Primase PriCT-1
repS2[pSM19035][AY357120] repS2 S. sanguis pSM19035 AY357120 2128–638 1491 1 Primase PriCT-1
rep1[pJB01][NC006427] rep1 E. faecalis pJB01 NC006427 NA 201 Unique na
rep2[pC223][NC005243] rep2 S. sanguis pC223 NC005243 na 155 Unique na
rep1[pWBG1773][EF537646] rep1 S. sanguis pWBG1773 EF537646 na 160 Unique NA