From 4a44bcf216400d591ac119a17ed329d4576e3f59 Mon Sep 17 00:00:00 2001
From: Ebrahim Ebrahim <ebrahim.ebrahim@kitware.com>
Date: Wed, 29 May 2024 15:28:11 -0400
Subject: [PATCH] style: standardize import order using isort

---
 HD_BET/config.py               |  6 ++++--
 HD_BET/data_loading.py         |  2 +-
 HD_BET/hd_bet_cli.py           |  3 ++-
 HD_BET/network_architecture.py |  1 +
 HD_BET/predict_case.py         |  2 +-
 HD_BET/run.py                  | 13 ++++++++-----
 HD_BET/utils.py                |  8 +++++---
 7 files changed, 22 insertions(+), 13 deletions(-)

diff --git a/HD_BET/config.py b/HD_BET/config.py
index 9306fcc..97d6801 100755
--- a/HD_BET/config.py
+++ b/HD_BET/config.py
@@ -1,8 +1,10 @@
+from abc import abstractmethod
+
 import numpy as np
 import torch
-from HD_BET.utils import SetNetworkToVal, softmax_helper
-from abc import abstractmethod
+
 from HD_BET.network_architecture import Network
+from HD_BET.utils import SetNetworkToVal, softmax_helper
 
 
 class BaseConfig(object):
diff --git a/HD_BET/data_loading.py b/HD_BET/data_loading.py
index 0a953ba..d985efa 100755
--- a/HD_BET/data_loading.py
+++ b/HD_BET/data_loading.py
@@ -1,5 +1,5 @@
-import SimpleITK as sitk
 import numpy as np
+import SimpleITK as sitk
 from skimage.transform import resize
 
 
diff --git a/HD_BET/hd_bet_cli.py b/HD_BET/hd_bet_cli.py
index 1606eca..6ec9806 100755
--- a/HD_BET/hd_bet_cli.py
+++ b/HD_BET/hd_bet_cli.py
@@ -1,9 +1,10 @@
 #!/usr/bin/env python
 
 import os
+
+import HD_BET
 from HD_BET.run import run_hd_bet
 from HD_BET.utils import maybe_mkdir_p, subfiles
-import HD_BET
 
 
 def main():
diff --git a/HD_BET/network_architecture.py b/HD_BET/network_architecture.py
index 0824aa1..2648905 100755
--- a/HD_BET/network_architecture.py
+++ b/HD_BET/network_architecture.py
@@ -1,6 +1,7 @@
 import torch
 import torch.nn as nn
 import torch.nn.functional as F
+
 from HD_BET.utils import softmax_helper
 
 
diff --git a/HD_BET/predict_case.py b/HD_BET/predict_case.py
index 559c667..7a07424 100755
--- a/HD_BET/predict_case.py
+++ b/HD_BET/predict_case.py
@@ -1,5 +1,5 @@
-import torch
 import numpy as np
+import torch
 
 
 def pad_patient_3D(patient, shape_must_be_divisible_by=16, min_size=None):
diff --git a/HD_BET/run.py b/HD_BET/run.py
index a2ad763..4cf55eb 100755
--- a/HD_BET/run.py
+++ b/HD_BET/run.py
@@ -1,12 +1,15 @@
-import torch
+import imp
+import os
+
 import numpy as np
 import SimpleITK as sitk
+import torch
+
+import HD_BET
 from HD_BET.data_loading import load_and_preprocess, save_segmentation_nifti
 from HD_BET.predict_case import predict_case_3D_net
-import imp
-from HD_BET.utils import postprocess_prediction, SetNetworkToVal, get_params_fname, maybe_download_parameters
-import os
-import HD_BET
+from HD_BET.utils import (SetNetworkToVal, get_params_fname,
+                          maybe_download_parameters, postprocess_prediction)
 
 
 def apply_bet(img, bet, out_fname):
diff --git a/HD_BET/utils.py b/HD_BET/utils.py
index f70f389..0202185 100755
--- a/HD_BET/utils.py
+++ b/HD_BET/utils.py
@@ -1,9 +1,11 @@
+import os
 from urllib.request import urlopen
-import torch
-from torch import nn
+
 import numpy as np
+import torch
 from skimage.morphology import label
-import os
+from torch import nn
+
 from HD_BET.paths import folder_with_parameter_files